data_YPI
# 
_chem_comp.id                                    YPI 
_chem_comp.name                                  "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][1-(2,2,2-trifluoroethoxy)isoquinolin-3-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H23 F3 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        536.505 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YPI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G40 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YPI N1  N1  N 0 1 N N N N N N -14.142 8.765  47.957 1.341  -2.115 0.719  N1  YPI 1  
YPI C2  C1  C 0 1 N N N N N N -14.749 9.581  49.005 0.116  -2.897 0.922  C2  YPI 2  
YPI C3  C2  C 0 1 N N S N N N -13.582 10.156 49.816 -1.054 -2.023 0.435  C3  YPI 3  
YPI C4  C3  C 0 1 N N R N N N -12.279 9.780  49.024 -0.538 -0.576 0.633  C4  YPI 4  
YPI C5  C4  C 0 1 N N N N N N -12.750 9.105  47.739 0.993  -0.700 0.556  C5  YPI 5  
YPI C6  C5  C 0 1 N N S N N N -13.270 11.652 49.596 -1.031 -1.744 -1.073 C6  YPI 6  
YPI C7  C6  C 0 1 N N R N N N -11.940 11.274 48.846 -1.188 -0.245 -0.721 C7  YPI 7  
YPI C8  C7  C 0 1 N N N N N N -12.818 12.428 50.832 -2.349 -2.091 -1.788 C8  YPI 8  
YPI N9  N2  N 0 1 N N N N N N -11.412 12.769 50.614 -3.367 -1.172 -1.267 N9  YPI 9  
YPI C10 C8  C 0 1 N N N N N N -10.797 11.815 49.708 -2.707 -0.029 -0.627 C10 YPI 10 
YPI C15 C9  C 0 1 N N N N N N -14.803 7.766  47.270 2.591  -2.618 0.691  C15 YPI 11 
YPI O16 O1  O 0 1 N N N N N N -16.004 7.492  47.491 2.770  -3.811 0.843  O16 YPI 12 
YPI C17 C10 C 0 1 N N N N N N -10.710 13.517 51.566 -4.699 -1.349 -1.363 C17 YPI 13 
YPI C18 C11 C 0 1 Y N N N N N -9.492  12.964 52.251 -5.620 -0.401 -0.702 C18 YPI 14 
YPI O19 O2  O 0 1 N N N N N N -11.124 14.658 51.865 -5.144 -2.289 -1.992 O19 YPI 15 
YPI C20 C12 C 0 1 Y N N N N N -9.484  11.641 52.745 -5.372 0.977  -0.773 C20 YPI 16 
YPI C21 C13 C 0 1 Y N N N N N -8.384  11.097 53.393 -6.214 1.862  -0.168 C21 YPI 17 
YPI C22 C14 C 0 1 Y N N N N N -8.383  13.809 52.404 -6.731 -0.879 -0.018 C22 YPI 18 
YPI C23 C15 C 0 1 Y N N N N N -7.258  13.288 53.058 -7.598 0.023  0.604  C23 YPI 19 
YPI C24 C16 C 0 1 Y N N N N N -7.266  11.921 53.556 -7.329 1.403  0.528  C24 YPI 20 
YPI N25 N3  N 0 1 Y N N N N N -5.997  11.774 54.137 -8.336 2.025  1.224  N25 YPI 21 
YPI N26 N4  N 0 1 Y N N N N N -5.307  12.926 54.002 -9.178 1.013  1.705  N26 YPI 22 
YPI N27 N5  N 0 1 Y N N N N N -5.977  13.815 53.400 -8.732 -0.133 1.327  N27 YPI 23 
YPI C28 C17 C 0 1 Y N N N N N -13.979 7.038  46.226 3.746  -1.719 0.477  C28 YPI 24 
YPI N29 N6  N 0 1 Y N N N N N -13.341 7.836  45.315 3.532  -0.410 0.312  N29 YPI 25 
YPI C30 C18 C 0 1 Y N N N N N -12.607 7.234  44.388 4.509  0.447  0.118  C30 YPI 26 
YPI C31 C19 C 0 1 Y N N N N N -13.864 5.654  46.226 5.022  -2.251 0.457  C31 YPI 27 
YPI C32 C20 C 0 1 Y N N N N N -13.059 5.018  45.227 6.111  -1.385 0.252  C32 YPI 28 
YPI C33 C21 C 0 1 Y N N N N N -12.395 5.820  44.263 5.848  -0.002 0.075  C33 YPI 29 
YPI C34 C22 C 0 1 Y N N N N N -11.588 5.236  43.253 6.917  0.879  -0.131 C34 YPI 30 
YPI C35 C23 C 0 1 Y N N N N N -11.441 3.864  43.202 8.192  0.395  -0.163 C35 YPI 31 
YPI C36 C24 C 0 1 Y N N N N N -12.104 3.053  44.159 8.449  -0.963 0.005  C36 YPI 32 
YPI C37 C25 C 0 1 Y N N N N N -12.890 3.612  45.148 7.434  -1.847 0.220  C37 YPI 33 
YPI O38 O3  O 0 1 N N N N N N -11.944 7.995  43.451 4.231  1.764  -0.043 O38 YPI 34 
YPI C39 C26 C 0 1 N N N N N N -11.526 9.266  43.960 2.856  2.148  0.010  C39 YPI 35 
YPI C40 C27 C 0 1 N N N N N N -10.906 9.943  42.704 2.741  3.661  -0.190 C40 YPI 36 
YPI F41 F1  F 0 1 N N N N N N -11.517 9.561  41.537 3.274  4.008  -1.436 F41 YPI 37 
YPI F42 F2  F 0 1 N N N N N N -10.993 11.316 42.735 1.395  4.037  -0.138 F42 YPI 38 
YPI F43 F3  F 0 1 N N N N N N -9.579  9.649  42.544 3.450  4.320  0.820  F43 YPI 39 
YPI H45 H1  H 0 1 N N N N N N -15.344 10.393 48.562 0.160  -3.818 0.341  H45 YPI 40 
YPI H44 H2  H 0 1 N N N N N N -15.393 8.962  49.647 -0.007 -3.128 1.980  H44 YPI 41 
YPI H12 H3  H 0 1 N N N N N N -13.565 9.843  50.870 -2.022 -2.261 0.876  H12 YPI 42 
YPI H11 H4  H 0 1 N N N N N N -11.544 9.207  49.608 -0.914 -0.039 1.503  H11 YPI 43 
YPI H46 H5  H 0 1 N N N N N N -12.160 8.197  47.545 1.450  -0.114 1.353  H46 YPI 44 
YPI H47 H6  H 0 1 N N N N N N -12.653 9.794  46.887 1.344  -0.343 -0.412 H47 YPI 45 
YPI H14 H7  H 0 1 N N N N N N -14.001 12.180 48.966 -0.119 -2.030 -1.598 H14 YPI 46 
YPI H13 H8  H 0 1 N N N N N N -11.915 11.608 47.798 -0.648 0.463  -1.350 H13 YPI 47 
YPI H49 H9  H 0 1 N N N N N N -13.418 13.343 50.947 -2.237 -1.953 -2.864 H49 YPI 48 
YPI H48 H10 H 0 1 N N N N N N -12.923 11.805 51.732 -2.631 -3.121 -1.572 H48 YPI 49 
YPI H50 H11 H 0 1 N N N N N N -10.322 10.999 50.273 -3.007 0.032  0.419  H50 YPI 50 
YPI H51 H12 H 0 1 N N N N N N -10.044 12.312 49.079 -2.981 0.891  -1.143 H51 YPI 51 
YPI H52 H13 H 0 1 N N N N N N -10.365 11.031 52.614 -4.509 1.339  -1.311 H52 YPI 52 
YPI H53 H14 H 0 1 N N N N N N -8.391  10.080 53.756 -6.014 2.922  -0.228 H53 YPI 53 
YPI H54 H15 H 0 1 N N N N N N -8.395  14.823 52.032 -6.923 -1.941 0.032  H54 YPI 54 
YPI H55 H16 H 0 1 N N N N N N -5.657  10.945 54.582 -8.443 2.980  1.357  H55 YPI 55 
YPI H56 H17 H 0 1 N N N N N N -14.376 5.064  46.971 5.179  -3.311 0.597  H56 YPI 56 
YPI H57 H18 H 0 1 N N N N N N -11.091 5.862  42.527 6.733  1.935  -0.263 H57 YPI 57 
YPI H58 H19 H 0 1 N N N N N N -10.825 3.411  42.439 9.015  1.076  -0.322 H58 YPI 58 
YPI H59 H20 H 0 1 N N N N N N -11.992 1.980  44.113 9.468  -1.319 -0.025 H59 YPI 59 
YPI H60 H21 H 0 1 N N N N N N -13.380 2.973  45.867 7.647  -2.898 0.354  H60 YPI 60 
YPI H61 H22 H 0 1 N N N N N N -12.382 9.843  44.341 2.304  1.634  -0.777 H61 YPI 61 
YPI H62 H23 H 0 1 N N N N N N -10.778 9.148  44.758 2.441  1.878  0.981  H62 YPI 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YPI N1  C2  SING N N 1  
YPI C2  C3  SING N N 2  
YPI C3  C4  SING N N 3  
YPI N1  C5  SING N N 4  
YPI C4  C5  SING N N 5  
YPI C3  C6  SING N N 6  
YPI C4  C7  SING N N 7  
YPI C6  C7  SING N N 8  
YPI C6  C8  SING N N 9  
YPI C8  N9  SING N N 10 
YPI C7  C10 SING N N 11 
YPI N9  C10 SING N N 12 
YPI N1  C15 SING N N 13 
YPI C15 O16 DOUB N N 14 
YPI N9  C17 SING N N 15 
YPI C17 C18 SING N N 16 
YPI C17 O19 DOUB N N 17 
YPI C18 C20 DOUB Y N 18 
YPI C20 C21 SING Y N 19 
YPI C18 C22 SING Y N 20 
YPI C22 C23 DOUB Y N 21 
YPI C21 C24 DOUB Y N 22 
YPI C23 C24 SING Y N 23 
YPI C24 N25 SING Y N 24 
YPI N25 N26 SING Y N 25 
YPI C23 N27 SING Y N 26 
YPI N26 N27 DOUB Y N 27 
YPI C15 C28 SING N N 28 
YPI C28 N29 DOUB Y N 29 
YPI N29 C30 SING Y N 30 
YPI C28 C31 SING Y N 31 
YPI C31 C32 DOUB Y N 32 
YPI C30 C33 DOUB Y N 33 
YPI C32 C33 SING Y N 34 
YPI C33 C34 SING Y N 35 
YPI C34 C35 DOUB Y N 36 
YPI C35 C36 SING Y N 37 
YPI C32 C37 SING Y N 38 
YPI C36 C37 DOUB Y N 39 
YPI C30 O38 SING N N 40 
YPI O38 C39 SING N N 41 
YPI C39 C40 SING N N 42 
YPI C40 F41 SING N N 43 
YPI C40 F42 SING N N 44 
YPI C40 F43 SING N N 45 
YPI C2  H45 SING N N 46 
YPI C2  H44 SING N N 47 
YPI C3  H12 SING N N 48 
YPI C4  H11 SING N N 49 
YPI C5  H46 SING N N 50 
YPI C5  H47 SING N N 51 
YPI C6  H14 SING N N 52 
YPI C7  H13 SING N N 53 
YPI C8  H49 SING N N 54 
YPI C8  H48 SING N N 55 
YPI C10 H50 SING N N 56 
YPI C10 H51 SING N N 57 
YPI C20 H52 SING N N 58 
YPI C21 H53 SING N N 59 
YPI C22 H54 SING N N 60 
YPI N25 H55 SING N N 61 
YPI C31 H56 SING N N 62 
YPI C34 H57 SING N N 63 
YPI C35 H58 SING N N 64 
YPI C36 H59 SING N N 65 
YPI C37 H60 SING N N 66 
YPI C39 H61 SING N N 67 
YPI C39 H62 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YPI SMILES           ACDLabs              12.01 "FC(F)(F)COc1nc(cc2ccccc21)C(=O)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                  
YPI InChI            InChI                1.06  "InChI=1S/C27H23F3N6O3/c28-27(29,30)13-39-24-16-4-2-1-3-14(16)7-23(31-24)26(38)36-11-19-17-9-35(10-18(17)20(19)12-36)25(37)15-5-6-21-22(8-15)33-34-32-21/h1-8,17-20H,9-13H2,(H,32,33,34)" 
YPI InChIKey         InChI                1.06  SVMYVCAWPRQJHP-UHFFFAOYSA-N                                                                                                                                                               
YPI SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)COc1nc(cc2ccccc12)C(=O)N3C[C@@H]4[C@H]5CN(C[C@H]5[C@@H]4C3)C(=O)c6ccc7[nH]nnc7c6"                                                                                                
YPI SMILES           CACTVS               3.385 "FC(F)(F)COc1nc(cc2ccccc12)C(=O)N3C[CH]4[CH]5CN(C[CH]5[CH]4C3)C(=O)c6ccc7[nH]nnc7c6"                                                                                                      
YPI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(nc2OCC(F)(F)F)C(=O)N3C[C@H]4[C@@H]5CN(C[C@@H]5[C@H]4C3)C(=O)c6ccc7c(c6)nn[nH]7"                                                                                            
YPI SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(nc2OCC(F)(F)F)C(=O)N3CC4C5CN(CC5C4C3)C(=O)c6ccc7c(c6)nn[nH]7"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YPI "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][1-(2,2,2-trifluoroethoxy)isoquinolin-3-yl]methanone"            
YPI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{R},2~{S},6~{R},7~{S})-9-[1-[2,2,2-tris(fluoranyl)ethoxy]isoquinolin-3-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YPI "Create component" 2023-06-19 RCSB 
YPI "Initial release"  2024-12-18 RCSB 
# 
