data_DMJ
# 
_chem_comp.id                                    DMJ 
_chem_comp.name                                  1-DEOXYMANNOJIRIMYCIN 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H13 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-09-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         DDM 
_chem_comp.formula_weight                        163.172 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DMJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1FO2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DMJ C4  C4  C 0 1 N N R 39.009 40.268 25.513 0.919  0.209  -0.104 C4  DMJ 1  
DMJ O4  O4  O 0 1 N N N 39.217 40.581 26.898 2.291  -0.075 0.174  O4  DMJ 2  
DMJ C3  C3  C 0 1 N N R 37.824 39.190 25.527 0.495  -0.518 -1.383 C3  DMJ 3  
DMJ O3  O3  O 0 1 N N N 37.451 38.710 24.240 1.229  -0.003 -2.496 O3  DMJ 4  
DMJ C2  C2  C 0 1 N N R 36.533 39.807 26.231 -1.003 -0.293 -1.609 C2  DMJ 5  
DMJ O2  O2  O 0 1 N N N 35.478 38.859 26.221 -1.248 1.094  -1.842 O2  DMJ 6  
DMJ C1  C1  C 0 1 N N N 36.111 41.142 25.488 -1.772 -0.747 -0.366 C1  DMJ 7  
DMJ N5  N5  N 0 1 N N N 37.272 42.018 25.583 -1.355 0.049  0.792  N5  DMJ 8  
DMJ C5  C5  C 0 1 N N R 38.593 41.640 24.847 0.050  -0.270 1.059  C5  DMJ 9  
DMJ C6  C6  C 0 1 N N N 38.369 41.545 23.307 0.495  0.425  2.347  C6  DMJ 10 
DMJ O6  O6  O 0 1 N N N 38.177 42.367 22.146 -0.313 -0.025 3.435  O6  DMJ 11 
DMJ H4  H4  H 0 1 N N N 39.877 39.849 24.953 0.790  1.283  -0.237 H4  DMJ 12 
DMJ HO4 HO4 H 0 1 N N N 39.919 41.220 26.889 2.802  0.238  -0.583 HO4 DMJ 13 
DMJ H3  H3  H 0 1 N N N 38.224 38.318 26.095 0.692  -1.585 -1.279 H3  DMJ 14 
DMJ HO3 HO3 H 0 1 N N N 36.748 38.070 24.248 0.924  -0.482 -3.278 HO3 DMJ 15 
DMJ H2  H2  H 0 1 N N N 36.765 40.053 27.293 -1.332 -0.872 -2.472 H2  DMJ 16 
DMJ HO2 HO2 H 0 1 N N N 34.708 39.226 26.640 -2.201 1.191  -1.975 HO2 DMJ 17 
DMJ H11 1H1 H 0 1 N N N 35.752 40.981 24.444 -1.565 -1.800 -0.176 H11 DMJ 18 
DMJ H12 2H1 H 0 1 N N N 35.171 41.596 25.879 -2.841 -0.613 -0.533 H12 DMJ 19 
DMJ HN5 HN5 H 0 1 N N N 37.483 42.168 26.569 -1.885 -0.289 1.582  HN5 DMJ 20 
DMJ H5  H5  H 0 1 N N N 39.400 42.401 24.951 0.161  -1.349 1.173  H5  DMJ 21 
DMJ H61 1H6 H 0 1 N N N 39.241 40.924 22.995 0.384  1.503  2.234  H61 DMJ 22 
DMJ H62 2H6 H 0 1 N N N 37.476 40.879 23.255 1.539  0.186  2.547  H62 DMJ 23 
DMJ HO6 HO6 H 0 1 N N N 38.040 42.309 21.207 -0.001 0.436  4.225  HO6 DMJ 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DMJ C4 O4  SING N N 1  
DMJ C4 C3  SING N N 2  
DMJ C4 C5  SING N N 3  
DMJ C4 H4  SING N N 4  
DMJ O4 HO4 SING N N 5  
DMJ C3 O3  SING N N 6  
DMJ C3 C2  SING N N 7  
DMJ C3 H3  SING N N 8  
DMJ O3 HO3 SING N N 9  
DMJ C2 O2  SING N N 10 
DMJ C2 C1  SING N N 11 
DMJ C2 H2  SING N N 12 
DMJ O2 HO2 SING N N 13 
DMJ C1 N5  SING N N 14 
DMJ C1 H11 SING N N 15 
DMJ C1 H12 SING N N 16 
DMJ N5 C5  SING N N 17 
DMJ N5 HN5 SING N N 18 
DMJ C5 C6  SING N N 19 
DMJ C5 H5  SING N N 20 
DMJ C6 O6  SING N N 21 
DMJ C6 H61 SING N N 22 
DMJ C6 H62 SING N N 23 
DMJ O6 HO6 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DMJ SMILES           ACDLabs              10.04 "OC1C(NCC(O)C1O)CO"                                                            
DMJ SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1NC[C@@H](O)[C@@H](O)[C@@H]1O"                                         
DMJ SMILES           CACTVS               3.341 "OC[CH]1NC[CH](O)[CH](O)[CH]1O"                                                
DMJ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O"                                       
DMJ SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(N1)CO)O)O)O"                                                        
DMJ InChI            InChI                1.03  "InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4-,5-,6-/m1/s1" 
DMJ InChIKey         InChI                1.03  LXBIFEVIBLOUGU-KVTDHHQDSA-N                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DMJ "SYSTEMATIC NAME" ACDLabs              10.04 "(2R,3R,4R,5R)-2-(hydroxymethyl)piperidine-3,4,5-triol" 
DMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R)-2-(hydroxymethyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DMJ "Create component"  2000-09-08 RCSB 
DMJ "Modify descriptor" 2011-06-04 RCSB 
# 
