data_ILJ
# 
_chem_comp.id                                    ILJ 
_chem_comp.name                                  "(E)-[7-azanyl-10-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-5,5-dimethyl-benzo[b][1]benzosilin-3-ylidene]-methyl-azanium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H43 Cl N3 O5 Si" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "HaloTag with TRaQ-G-ctrl ligand" 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2022-03-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        637.261 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ILJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZBB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ILJ C01  C1  C  0 1 N N N N N N -21.817 40.723 21.131 -3.385 0.643  2.745  C01  ILJ 1  
ILJ C02  C2  C  0 1 Y N N N N N -17.430 41.281 18.978 -6.425 2.388  0.333  C02  ILJ 2  
ILJ C03  C3  C  0 1 Y N N N N N -16.237 40.972 19.643 -7.599 1.683  0.077  C03  ILJ 3  
ILJ C04  C4  C  0 1 Y N N N N N -16.195 39.940 20.578 -7.532 0.311  -0.196 C04  ILJ 4  
ILJ C05  C5  C  0 1 Y N N N N N -17.350 39.212 20.861 -6.331 -0.293 -0.204 C05  ILJ 5  
ILJ C06  C6  C  0 1 Y N N N N N -18.545 39.522 20.190 -5.120 0.391  0.051  C06  ILJ 6  
ILJ C07  C7  C  0 1 Y N N N N N -18.589 40.560 19.250 -5.211 1.770  0.324  C07  ILJ 7  
ILJ C08  C8  C  0 1 N N N N N N -19.854 38.751 20.464 -3.832 -0.272 0.039  C08  ILJ 8  
ILJ C09  C9  C  0 1 N N N N N N -19.979 37.611 21.479 -3.401 -1.571 -0.185 C09  ILJ 9  
ILJ C10  C10 C  0 1 N N N N N N -18.915 37.137 22.237 -4.294 -2.640 -0.487 C10  ILJ 10 
ILJ C11  C11 C  0 1 N N N N N N -19.148 36.088 23.128 -3.900 -3.895 -0.705 C11  ILJ 11 
ILJ C12  C12 C  0 1 N N N N N N -20.428 35.527 23.239 -2.465 -4.203 -0.631 C12  ILJ 12 
ILJ C13  C13 C  0 1 N N N N N N -21.484 36.005 22.470 -1.543 -3.109 -0.321 C13  ILJ 13 
ILJ C14  C14 C  0 1 N N N N N N -21.266 37.054 21.589 -2.011 -1.862 -0.112 C14  ILJ 14 
ILJ C18  C15 C  0 1 N N N N N N -16.686 38.525 23.762 -6.782 -2.512 -2.254 C18  ILJ 15 
ILJ C19  C16 C  0 1 N N N N N N -15.983 36.603 21.502 -7.068 -3.114 0.706  C19  ILJ 16 
ILJ C20  C17 C  0 1 Y N N N N N -21.052 38.961 19.521 -2.721 0.649  0.331  C20  ILJ 17 
ILJ C21  C18 C  0 1 Y N N N N N -22.010 39.911 19.838 -2.500 1.097  1.651  C21  ILJ 18 
ILJ C22  C19 C  0 1 Y N N N N N -23.099 40.084 18.987 -1.448 1.968  1.920  C22  ILJ 19 
ILJ C23  C20 C  0 1 Y N N N N N -23.223 39.309 17.830 -0.621 2.393  0.899  C23  ILJ 20 
ILJ C24  C21 C  0 1 Y N N N N N -22.292 38.312 17.538 -0.834 1.955  -0.410 C24  ILJ 21 
ILJ C25  C22 C  0 1 Y N N N N N -21.184 38.183 18.378 -1.878 1.079  -0.694 C25  ILJ 22 
ILJ C26  C23 C  0 1 N N N N N N -22.281 37.456 16.247 0.058  2.418  -1.497 C26  ILJ 23 
ILJ C29  C24 C  0 1 N N N N N N -24.533 37.965 15.069 1.955  3.720  -2.300 C29  ILJ 24 
ILJ C30  C25 C  0 1 N N N N N N -25.504 36.763 14.834 3.015  4.661  -1.724 C30  ILJ 25 
ILJ C32  C26 C  0 1 N N N N N N -25.817 34.503 14.192 4.888  4.729  -0.230 C32  ILJ 26 
ILJ C33  C27 C  0 1 N N N N N N -26.408 34.003 12.851 5.725  3.855  0.707  C33  ILJ 27 
ILJ C35  C28 C  0 1 N N N N N N -25.532 31.777 12.580 7.222  1.984  0.729  C35  ILJ 28 
ILJ C36  C29 C  0 1 N N N N N N -24.543 30.999 11.645 7.902  0.963  -0.186 C36  ILJ 29 
ILJ C37  C30 C  0 1 N N N N N N -24.929 31.016 10.137 8.774  0.027  0.654  C37  ILJ 30 
ILJ C38  C31 C  0 1 N N N N N N -23.938 30.237 9.237  9.453  -0.994 -0.261 C38  ILJ 31 
ILJ C39  C32 C  0 1 N N N N N N -24.192 30.483 7.732  10.326 -1.930 0.579  C39  ILJ 32 
ILJ C40  C33 C  0 1 N N N N N N -23.615 29.366 6.836  11.005 -2.951 -0.336 C40  ILJ 33 
ILJ C41  C34 C  0 1 N N N N N N -21.923 33.591 24.111 -0.584 -5.714 -0.759 C41  ILJ 34 
ILJ N15  N1  N  1 1 N N N N N N -20.696 34.414 24.169 -2.020 -5.432 -0.838 N15  ILJ 35 
ILJ N16  N2  N  0 1 N N N N N N -15.008 41.728 19.352 -8.826 2.335  0.093  N16  ILJ 36 
ILJ N28  N3  N  0 1 N N N N N N -23.224 37.374 15.144 1.073  3.261  -1.224 N28  ILJ 37 
ILJ O27  O1  O  0 1 N N N N N N -21.297 36.817 16.022 -0.125 2.037  -2.637 O27  ILJ 38 
ILJ O31  O2  O  0 1 N N N N N N -24.996 35.668 14.060 3.858  3.937  -0.826 O31  ILJ 39 
ILJ O34  O3  O  0 1 N N N N N N -25.503 33.129 12.197 6.408  2.858  -0.055 O34  ILJ 40 
ILJ O42  O4  O  0 1 N N N N N N -21.150 41.795 21.148 -4.303 -0.116 2.509  O42  ILJ 41 
ILJ O43  O5  O  0 1 N N N N N N -22.324 40.288 22.197 -3.169 1.068  4.006  O43  ILJ 42 
ILJ SI17 SI1 SI 0 0 N N N N N N -17.296 37.885 22.059 -6.113 -2.134 -0.558 SI17 ILJ 43 
ILJ H021 H1  H  0 0 N N N N N N -17.451 42.081 18.252 -6.478 3.447  0.539  H021 ILJ 44 
ILJ H041 H2  H  0 0 N N N N N N -15.270 39.704 21.083 -8.431 -0.253 -0.397 H041 ILJ 45 
ILJ H071 H3  H  0 0 N N N N N N -19.512 40.798 18.742 -4.315 2.338  0.525  H071 ILJ 46 
ILJ H111 H5  H  0 0 N N N N N N -18.339 35.707 23.734 -4.620 -4.668 -0.930 H111 ILJ 47 
ILJ H131 H6  H  0 0 N N N N N N -22.465 35.563 22.558 -0.482 -3.301 -0.259 H131 ILJ 48 
ILJ H141 H7  H  0 0 N N N N N N -22.079 37.440 20.992 -1.316 -1.067 0.116  H141 ILJ 49 
ILJ H183 H8  H  0 0 N N N N N N -16.662 37.692 24.480 -6.239 -1.929 -2.998 H183 ILJ 50 
ILJ H182 H9  H  0 0 N N N N N N -15.676 38.946 23.655 -6.659 -3.574 -2.465 H182 ILJ 51 
ILJ H181 H10 H  0 0 N N N N N N -17.371 39.304 24.128 -7.841 -2.254 -2.293 H181 ILJ 52 
ILJ H192 H11 H  0 0 N N N N N N -15.940 35.781 22.231 -8.125 -2.852 0.647  H192 ILJ 53 
ILJ H193 H12 H  0 0 N N N N N N -16.257 36.203 20.515 -6.946 -4.179 0.508  H193 ILJ 54 
ILJ H191 H13 H  0 0 N N N N N N -14.999 37.090 21.440 -6.693 -2.885 1.704  H191 ILJ 55 
ILJ H221 H14 H  0 0 N N N N N N -23.852 40.821 19.222 -1.277 2.311  2.930  H221 ILJ 56 
ILJ H231 H15 H  0 0 N N N N N N -24.048 39.484 17.155 0.193  3.069  1.114  H231 ILJ 57 
ILJ H251 H16 H  0 0 N N N N N N -20.415 37.465 18.134 -2.041 0.740  -1.706 H251 ILJ 58 
ILJ H291 H17 H  0 0 N N N N N N -24.589 38.677 14.232 1.368  4.249  -3.050 H291 ILJ 59 
ILJ H292 H18 H  0 0 N N N N N N -24.778 38.483 16.008 2.443  2.861  -2.760 H292 ILJ 60 
ILJ H301 H19 H  0 0 N N N N N N -26.396 37.150 14.319 3.615  5.072  -2.536 H301 ILJ 61 
ILJ H302 H20 H  0 0 N N N N N N -25.792 36.369 15.820 2.526  5.474  -1.187 H302 ILJ 62 
ILJ H322 H21 H  0 0 N N N N N N -26.649 34.740 14.871 4.438  5.543  0.337  H322 ILJ 63 
ILJ H321 H22 H  0 0 N N N N N N -25.208 33.696 14.625 5.528  5.141  -1.011 H321 ILJ 64 
ILJ H332 H23 H  0 0 N N N N N N -26.609 34.867 12.201 6.453  4.476  1.228  H332 ILJ 65 
ILJ H331 H24 H  0 0 N N N N N N -27.348 33.467 13.049 5.072  3.373  1.434  H331 ILJ 66 
ILJ H352 H25 H  0 0 N N N N N N -26.550 31.376 12.466 6.600  1.463  1.456  H352 ILJ 67 
ILJ H351 H26 H  0 0 N N N N N N -25.214 31.677 13.628 7.982  2.566  1.251  H351 ILJ 68 
ILJ H361 H27 H  0 0 N N N N N N -24.508 29.951 11.978 7.142  0.381  -0.708 H361 ILJ 69 
ILJ H362 H28 H  0 0 N N N N N N -23.545 31.451 11.749 8.524  1.484  -0.913 H362 ILJ 70 
ILJ H372 H29 H  0 0 N N N N N N -24.960 32.062 9.797  9.533  0.609  1.176  H372 ILJ 71 
ILJ H371 H30 H  0 0 N N N N N N -25.927 30.565 10.028 8.152  -0.494 1.381  H371 ILJ 72 
ILJ H381 H31 H  0 0 N N N N N N -24.045 29.162 9.442  8.694  -1.576 -0.783 H381 ILJ 73 
ILJ H382 H32 H  0 0 N N N N N N -22.914 30.557 9.480  10.076 -0.473 -0.988 H382 ILJ 74 
ILJ H391 H33 H  0 0 N N N N N N -23.724 31.437 7.448  11.085 -1.347 1.101  H391 ILJ 75 
ILJ H392 H34 H  0 0 N N N N N N -25.278 30.542 7.564  9.703  -2.451 1.306  H392 ILJ 76 
ILJ H2   H35 H  0 1 N N N N N N -23.599 29.715 5.793  10.246 -3.533 -0.858 H2   ILJ 77 
ILJ H403 H36 H  0 0 N N N N N N -22.589 29.138 7.162  11.627 -2.430 -1.063 H403 ILJ 78 
ILJ H411 H38 H  0 0 N N N N N N -21.892 32.829 24.904 -0.055 -5.114 -1.499 H411 ILJ 79 
ILJ H412 H39 H  0 0 N N N N N N -22.803 34.235 24.256 -0.220 -5.467 0.238  H412 ILJ 80 
ILJ H413 H40 H  0 0 N N N N N N -21.987 33.097 23.130 -0.410 -6.772 -0.957 H413 ILJ 81 
ILJ H161 H42 H  0 0 N N N N N N -14.259 41.376 19.913 -8.868 3.285  0.282  H161 ILJ 82 
ILJ H162 H43 H  0 0 N N N N N N -14.776 41.627 18.385 -9.641 1.840  -0.086 H162 ILJ 83 
ILJ H281 H44 H  0 0 N N N N N N -22.929 36.847 14.347 1.219  3.565  -0.314 H281 ILJ 84 
ILJ H3   H45 H  0 1 N N N N N N -22.113 40.877 22.912 -3.771 0.741  4.688  H3   ILJ 85 
ILJ CL1  CL1 CL 0 0 N Y N N N N -24.377 28.222 6.916  12.033 -4.054 0.654  CL1  ILJ 86 
ILJ H1   H46 H  0 1 N N N N N N -20.016 34.206 24.872 -2.644 -6.146 -1.043 H1   ILJ 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ILJ C40  C39  SING N N 1  
ILJ C39  C38  SING N N 2  
ILJ C38  C37  SING N N 3  
ILJ C37  C36  SING N N 4  
ILJ C36  C35  SING N N 5  
ILJ O34  C35  SING N N 6  
ILJ O34  C33  SING N N 7  
ILJ C33  C32  SING N N 8  
ILJ O31  C32  SING N N 9  
ILJ O31  C30  SING N N 10 
ILJ C30  C29  SING N N 11 
ILJ C29  N28  SING N N 12 
ILJ N28  C26  SING N N 13 
ILJ O27  C26  DOUB N N 14 
ILJ C26  C24  SING N N 15 
ILJ C24  C23  DOUB Y N 16 
ILJ C24  C25  SING Y N 17 
ILJ C23  C22  SING Y N 18 
ILJ C25  C20  DOUB Y N 19 
ILJ C02  C07  DOUB Y N 20 
ILJ C02  C03  SING Y N 21 
ILJ C22  C21  DOUB Y N 22 
ILJ C07  C06  SING Y N 23 
ILJ N16  C03  SING N N 24 
ILJ C20  C21  SING Y N 25 
ILJ C20  C08  SING N N 26 
ILJ C03  C04  DOUB Y N 27 
ILJ C21  C01  SING N N 28 
ILJ C06  C08  SING N N 29 
ILJ C06  C05  DOUB Y N 30 
ILJ C08  C09  DOUB N N 31 
ILJ C04  C05  SING Y N 32 
ILJ C05  SI17 SING N N 33 
ILJ C01  O42  DOUB N N 34 
ILJ C01  O43  SING N N 35 
ILJ C09  C14  SING N N 36 
ILJ C09  C10  SING N N 37 
ILJ C19  SI17 SING N N 38 
ILJ C14  C13  DOUB N N 39 
ILJ SI17 C10  SING N N 40 
ILJ SI17 C18  SING N N 41 
ILJ C10  C11  DOUB N N 42 
ILJ C13  C12  SING N N 43 
ILJ C11  C12  SING N N 44 
ILJ C12  N15  DOUB N N 45 
ILJ C41  N15  SING N N 46 
ILJ C02  H021 SING N N 47 
ILJ C04  H041 SING N N 48 
ILJ C07  H071 SING N N 49 
ILJ C11  H111 SING N N 50 
ILJ C13  H131 SING N N 51 
ILJ C14  H141 SING N N 52 
ILJ C18  H183 SING N N 53 
ILJ C18  H182 SING N N 54 
ILJ C18  H181 SING N N 55 
ILJ C19  H192 SING N N 56 
ILJ C19  H193 SING N N 57 
ILJ C19  H191 SING N N 58 
ILJ C22  H221 SING N N 59 
ILJ C23  H231 SING N N 60 
ILJ C25  H251 SING N N 61 
ILJ C29  H291 SING N N 62 
ILJ C29  H292 SING N N 63 
ILJ C30  H301 SING N N 64 
ILJ C30  H302 SING N N 65 
ILJ C32  H322 SING N N 66 
ILJ C32  H321 SING N N 67 
ILJ C33  H332 SING N N 68 
ILJ C33  H331 SING N N 69 
ILJ C35  H352 SING N N 70 
ILJ C35  H351 SING N N 71 
ILJ C36  H361 SING N N 72 
ILJ C36  H362 SING N N 73 
ILJ C37  H372 SING N N 74 
ILJ C37  H371 SING N N 75 
ILJ C38  H381 SING N N 76 
ILJ C38  H382 SING N N 77 
ILJ C39  H391 SING N N 78 
ILJ C39  H392 SING N N 79 
ILJ C40  H2   SING N N 80 
ILJ C40  H403 SING N N 81 
ILJ C41  H411 SING N N 82 
ILJ C41  H412 SING N N 83 
ILJ C41  H413 SING N N 84 
ILJ N16  H161 SING N N 85 
ILJ N16  H162 SING N N 86 
ILJ N28  H281 SING N N 87 
ILJ O43  H3   SING N N 88 
ILJ C40  CL1  SING N N 89 
ILJ N15  H1   SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ILJ InChI            InChI                1.06  "InChI=1S/C34H42ClN3O5Si/c1-37-25-10-13-28-31(22-25)44(2,3)30-21-24(36)9-12-27(30)32(28)29-20-23(8-11-26(29)34(40)41)33(39)38-15-17-43-19-18-42-16-7-5-4-6-14-35/h8-13,20-22H,4-7,14-19,36H2,1-3H3,(H,38,39)(H,40,41)/p+1/b37-25+" 
ILJ InChIKey         InChI                1.06  HVINIPVEAAMTAU-AUGOTPMTSA-O                                                                                                                                                                                                        
ILJ SMILES_CANONICAL CACTVS               3.385 "C[NH+]=C1C=CC2=C(c3cc(ccc3C(O)=O)C(=O)NCCOCCOCCCCCCCl)c4ccc(N)cc4[Si](C)(C)C2=C1"                                                                                                                                                 
ILJ SMILES           CACTVS               3.385 "C[NH+]=C1C=CC2=C(c3cc(ccc3C(O)=O)C(=O)NCCOCCOCCCCCCCl)c4ccc(N)cc4[Si](C)(C)C2=C1"                                                                                                                                                 
ILJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/[NH+]=C/1\C=CC2=C(c3ccc(cc3[Si](C2=C1)(C)C)N)c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCCCl"                                                                                                                                              
ILJ SMILES           "OpenEye OEToolkits" 2.0.7 "C[NH+]=C1C=CC2=C(c3ccc(cc3[Si](C2=C1)(C)C)N)c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCCCl"                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           ILJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(~{E})-[7-azanyl-10-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-5,5-dimethyl-benzo[b][1]benzosilin-3-ylidene]-methyl-azanium" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      ILJ 
_pdbx_chem_comp_synonyms.name         "HaloTag with TRaQ-G-ctrl ligand" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ILJ "Create component"  2022-03-31 PDBE 
ILJ "Modify descriptor" 2022-08-22 RCSB 
ILJ "Initial release"   2023-02-01 RCSB 
ILJ "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ILJ 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C40 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
