data_IXJ
# 
_chem_comp.id                                    IXJ 
_chem_comp.name                                  "(2~{R})-6-[[(2~{S})-6-azanyl-2-[[(2~{S})-6-azanyl-2-(2-phenylethanoylamino)hexanoyl]amino]hexanoyl]amino]-2-carbamimidamido-hexanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H46 N8 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-20 
_chem_comp.pdbx_modified_date                    2022-12-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        562.705 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IXJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZMI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IXJ N1  N1  N 0 1 N N N -0.999  0.066  -9.433  -5.026  6.244  -0.567 N1  IXJ 1  
IXJ C7  C1  C 0 1 N N S -8.329  4.390  -13.642 0.283   -1.011 0.266  C7  IXJ 2  
IXJ C8  C2  C 0 1 N N N -8.633  5.125  -12.336 0.308   -2.377 -0.424 C8  IXJ 3  
IXJ N2  N2  N 0 1 N N N -6.899  4.159  -13.773 -0.921  -0.282 -0.140 N2  IXJ 4  
IXJ C9  C3  C 0 1 N N N -7.994  4.502  -11.096 -0.865  -3.223 0.076  C9  IXJ 5  
IXJ O1  O1  O 0 1 N N N -5.577  7.552  -19.912 10.983  -0.236 0.867  O1  IXJ 6  
IXJ C1  C4  C 0 1 N N S -4.856  2.830  -13.640 -3.323  0.263  0.091  C1  IXJ 7  
IXJ C5  C5  C 0 1 N N N -1.331  0.589  -10.764 -5.259  4.800  -0.704 C5  IXJ 8  
IXJ C6  C6  C 0 1 N N N -6.371  2.927  -13.821 -2.085  -0.488 0.509  C6  IXJ 9  
IXJ N3  N3  N 0 1 N N N -8.829  1.737  -8.579  -1.987  -6.745 -0.776 N3  IXJ 10 
IXJ C4  C7  C 0 1 N N N -2.785  1.003  -10.877 -4.049  4.035  -0.164 C4  IXJ 11 
IXJ O4  O2  O 0 1 N N N -7.043  1.910  -13.997 -2.135  -1.276 1.429  O4  IXJ 12 
IXJ C3  C8  C 0 1 N N N -3.116  1.582  -12.239 -4.291  2.531  -0.307 C3  IXJ 13 
IXJ O3  O3  O 0 1 N N N -8.518  6.377  -14.967 1.382   0.841  -0.699 O3  IXJ 14 
IXJ C2  C9  C 0 1 N N N -4.546  2.096  -12.334 -3.081  1.766  0.234  C2  IXJ 15 
IXJ N4  N4  N 0 1 N N N -9.748  4.608  -15.622 2.734   -0.704 0.142  N4  IXJ 16 
IXJ N   N5  N 0 1 N N N -4.228  4.141  -13.655 -4.446  -0.134 0.945  N   IXJ 17 
IXJ C   C10 C 0 1 N N N -3.759  4.710  -14.772 -5.710  -0.019 0.493  C   IXJ 18 
IXJ O   O4  O 0 1 N N N -3.871  4.193  -15.881 -5.918  0.414  -0.621 O   IXJ 19 
IXJ C10 C11 C 0 1 N N N -8.726  3.277  -10.558 -0.839  -4.588 -0.613 C10 IXJ 20 
IXJ C11 C12 C 0 1 N N N -8.023  2.696  -9.345  -2.012  -5.434 -0.114 C11 IXJ 21 
IXJ C12 C13 C 0 1 N N N -8.867  5.211  -14.816 1.505   -0.224 -0.132 C12 IXJ 22 
IXJ C13 C14 C 0 1 N N N -9.359  3.759  -16.741 3.922   0.061  -0.245 C13 IXJ 23 
IXJ C14 C15 C 0 1 N N N -9.029  4.522  -18.020 5.179   -0.701 0.179  C14 IXJ 24 
IXJ C15 C16 C 0 1 N N N -7.690  5.237  -17.948 6.420   0.098  -0.225 C15 IXJ 25 
IXJ C16 C17 C 0 1 N N N -6.775  4.934  -19.123 7.677   -0.663 0.199  C16 IXJ 26 
IXJ C17 C18 C 0 1 N N R -5.342  5.423  -18.905 8.918   0.136  -0.205 C17 IXJ 27 
IXJ C18 C19 C 0 1 N N N -3.142  4.791  -19.751 9.627   2.479  0.035  C18 IXJ 28 
IXJ C19 C20 C 0 1 N N N -5.299  6.940  -18.784 10.155  -0.669 0.101  C19 IXJ 29 
IXJ C20 C21 C 0 1 N N N -3.082  6.053  -14.582 -6.865  -0.427 1.371  C20 IXJ 30 
IXJ C21 C22 C 0 1 Y N N -1.680  6.092  -15.148 -8.160  -0.200 0.635  C21 IXJ 31 
IXJ C22 C23 C 0 1 Y N N -0.668  5.311  -14.608 -8.698  -1.207 -0.145 C22 IXJ 32 
IXJ C23 C24 C 0 1 Y N N 0.613   5.361  -15.128 -9.886  -0.999 -0.820 C23 IXJ 33 
IXJ C24 C25 C 0 1 Y N N 0.896   6.194  -16.198 -10.536 0.216  -0.716 C24 IXJ 34 
IXJ C25 C26 C 0 1 Y N N -0.096  6.985  -16.758 -9.999  1.223  0.064  C25 IXJ 35 
IXJ C29 C27 C 0 1 Y N N -1.378  6.925  -16.222 -8.814  1.013  0.744  C29 IXJ 36 
IXJ N5  N6  N 0 1 N N N -4.473  4.949  -19.970 8.955   1.393  0.545  N5  IXJ 37 
IXJ N6  N7  N 0 1 N N N -2.712  5.154  -18.463 10.264  2.384  -1.179 N6  IXJ 38 
IXJ N7  N8  N 0 1 N N N -2.375  4.333  -20.720 9.660   3.598  0.703  N7  IXJ 39 
IXJ O2  O5  O 0 1 N N N -5.032  7.509  -17.743 10.338  -1.866 -0.478 O2  IXJ 40 
IXJ H1  H1  H 0 1 N N N -0.033  -0.193 -9.407  -5.812  6.772  -0.918 H1  IXJ 41 
IXJ H2  H2  H 0 1 N N N -1.174  0.770  -8.745  -4.825  6.489  0.391  H2  IXJ 42 
IXJ H4  H4  H 0 1 N N N -8.854  3.424  -13.626 0.276   -1.150 1.347  H4  IXJ 43 
IXJ H5  H5  H 0 1 N N N -8.266  6.158  -12.429 0.226   -2.241 -1.502 H5  IXJ 44 
IXJ H6  H6  H 0 1 N N N -9.724  5.135  -12.193 1.246   -2.883 -0.192 H6  IXJ 45 
IXJ H7  H7  H 0 1 N N N -6.287  4.948  -13.829 -0.882  0.349  -0.876 H7  IXJ 46 
IXJ H8  H8  H 0 1 N N N -6.966  4.204  -11.351 -0.781  -3.358 1.154  H8  IXJ 47 
IXJ H9  H9  H 0 1 N N N -7.969  5.264  -10.303 -1.802  -2.717 -0.155 H9  IXJ 48 
IXJ H10 H10 H 0 1 N N N -4.453  2.231  -14.470 -3.556  0.029  -0.948 H10 IXJ 49 
IXJ H11 H11 H 0 1 N N N -1.127  -0.192 -11.511 -6.148  4.520  -0.139 H11 IXJ 50 
IXJ H12 H12 H 0 1 N N N -0.698  1.465  -10.967 -5.404  4.554  -1.756 H12 IXJ 51 
IXJ H13 H13 H 0 1 N N N -8.298  1.402  -7.801  -2.752  -7.323 -0.463 H13 IXJ 52 
IXJ H14 H14 H 0 1 N N N -9.658  2.188  -8.248  -1.997  -6.644 -1.780 H14 IXJ 53 
IXJ H16 H16 H 0 1 N N N -2.997  1.762  -10.109 -3.160  4.315  -0.729 H16 IXJ 54 
IXJ H17 H17 H 0 1 N N N -3.418  0.120  -10.705 -3.903  4.282  0.888  H17 IXJ 55 
IXJ H18 H18 H 0 1 N N N -2.974  0.798  -12.997 -5.180  2.251  0.259  H18 IXJ 56 
IXJ H19 H19 H 0 1 N N N -2.429  2.417  -12.442 -4.436  2.285  -1.358 H19 IXJ 57 
IXJ H20 H20 H 0 1 N N N -4.721  2.789  -11.498 -2.936  2.013  1.286  H20 IXJ 58 
IXJ H21 H21 H 0 1 N N N -5.229  1.238  -12.249 -2.192  2.047  -0.331 H21 IXJ 59 
IXJ H22 H22 H 0 1 N N N -10.723 4.747  -15.448 2.832   -1.556 0.595  H22 IXJ 60 
IXJ H23 H23 H 0 1 N N N -4.143  4.640  -12.793 -4.279  -0.481 1.836  H23 IXJ 61 
IXJ H24 H24 H 0 1 N N N -9.748  3.568  -10.273 -0.922  -4.453 -1.692 H24 IXJ 62 
IXJ H25 H25 H 0 1 N N N -8.769  2.511  -11.347 0.099   -5.094 -0.382 H25 IXJ 63 
IXJ H26 H26 H 0 1 N N N -7.112  2.183  -9.688  -2.949  -4.928 -0.345 H26 IXJ 64 
IXJ H27 H27 H 0 1 N N N -7.748  3.525  -8.677  -1.929  -5.570 0.964  H27 IXJ 65 
IXJ H28 H28 H 0 1 N N N -10.189 3.069  -16.955 3.928   0.200  -1.326 H28 IXJ 66 
IXJ H29 H29 H 0 1 N N N -8.470  3.183  -16.444 3.903   1.034  0.246  H29 IXJ 67 
IXJ H30 H30 H 0 1 N N N -9.817  5.268  -18.198 5.173   -0.839 1.260  H30 IXJ 68 
IXJ H31 H31 H 0 1 N N N -9.003  3.810  -18.858 5.198   -1.673 -0.312 H31 IXJ 69 
IXJ H32 H32 H 0 1 N N N -7.181  4.930  -17.023 6.426   0.237  -1.306 H32 IXJ 70 
IXJ H33 H33 H 0 1 N N N -7.875  6.321  -17.922 6.402   1.071  0.266  H33 IXJ 71 
IXJ H34 H34 H 0 1 N N N -7.181  5.426  -20.019 7.671   -0.802 1.280  H34 IXJ 72 
IXJ H35 H35 H 0 1 N N N -6.754  3.845  -19.280 7.696   -1.636 -0.292 H35 IXJ 73 
IXJ H36 H36 H 0 1 N N N -4.989  5.002  -17.952 8.880   0.351  -1.273 H36 IXJ 74 
IXJ H37 H37 H 0 1 N N N -3.032  6.271  -13.505 -6.772  -1.483 1.626  H37 IXJ 75 
IXJ H38 H38 H 0 1 N N N -3.685  6.824  -15.085 -6.856  0.169  2.283  H38 IXJ 76 
IXJ H39 H39 H 0 1 N N N -0.882  4.658  -13.775 -8.189  -2.157 -0.227 H39 IXJ 77 
IXJ H40 H40 H 0 1 N N N 1.393   4.750  -14.699 -10.305 -1.786 -1.430 H40 IXJ 78 
IXJ H41 H41 H 0 1 N N N 1.898   6.228  -16.600 -11.464 0.379  -1.244 H41 IXJ 79 
IXJ H42 H42 H 0 1 N N N 0.122   7.634  -17.593 -10.509 2.171  0.149  H42 IXJ 80 
IXJ H43 H43 H 0 1 N N N -2.157  7.539  -16.649 -8.394  1.799  1.353  H43 IXJ 81 
IXJ H44 H44 H 0 1 N N N -4.858  4.738  -20.869 8.505   1.460  1.402  H44 IXJ 82 
IXJ H45 H45 H 0 1 N N N -3.371  5.497  -17.794 10.240  1.552  -1.676 H45 IXJ 83 
IXJ H46 H46 H 0 1 N N N -1.747  5.069  -18.216 10.738  3.150  -1.539 H46 IXJ 84 
IXJ H47 H47 H 0 1 N N N -1.417  4.266  -20.440 10.134  4.364  0.343  H47 IXJ 85 
IXJ H48 H48 H 0 1 N N N -5.058  8.449  -17.880 11.146  -2.345 -0.251 H48 IXJ 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IXJ N7  C18 DOUB N N 1  
IXJ N5  C18 SING N N 2  
IXJ N5  C17 SING N N 3  
IXJ O1  C19 DOUB N N 4  
IXJ C18 N6  SING N N 5  
IXJ C16 C17 SING N N 6  
IXJ C16 C15 SING N N 7  
IXJ C17 C19 SING N N 8  
IXJ C19 O2  SING N N 9  
IXJ C14 C15 SING N N 10 
IXJ C14 C13 SING N N 11 
IXJ C25 C29 DOUB Y N 12 
IXJ C25 C24 SING Y N 13 
IXJ C13 N4  SING N N 14 
IXJ C29 C21 SING Y N 15 
IXJ C24 C23 DOUB Y N 16 
IXJ O   C   DOUB N N 17 
IXJ N4  C12 SING N N 18 
IXJ C21 C22 DOUB Y N 19 
IXJ C21 C20 SING N N 20 
IXJ C23 C22 SING Y N 21 
IXJ O3  C12 DOUB N N 22 
IXJ C12 C7  SING N N 23 
IXJ C   C20 SING N N 24 
IXJ C   N   SING N N 25 
IXJ O4  C6  DOUB N N 26 
IXJ C6  N2  SING N N 27 
IXJ C6  C1  SING N N 28 
IXJ N2  C7  SING N N 29 
IXJ N   C1  SING N N 30 
IXJ C7  C8  SING N N 31 
IXJ C1  C2  SING N N 32 
IXJ C8  C9  SING N N 33 
IXJ C2  C3  SING N N 34 
IXJ C3  C4  SING N N 35 
IXJ C9  C10 SING N N 36 
IXJ C4  C5  SING N N 37 
IXJ C5  N1  SING N N 38 
IXJ C10 C11 SING N N 39 
IXJ C11 N3  SING N N 40 
IXJ N1  H1  SING N N 41 
IXJ N1  H2  SING N N 42 
IXJ C7  H4  SING N N 43 
IXJ C8  H5  SING N N 44 
IXJ C8  H6  SING N N 45 
IXJ N2  H7  SING N N 46 
IXJ C9  H8  SING N N 47 
IXJ C9  H9  SING N N 48 
IXJ C1  H10 SING N N 49 
IXJ C5  H11 SING N N 50 
IXJ C5  H12 SING N N 51 
IXJ N3  H13 SING N N 52 
IXJ N3  H14 SING N N 53 
IXJ C4  H16 SING N N 54 
IXJ C4  H17 SING N N 55 
IXJ C3  H18 SING N N 56 
IXJ C3  H19 SING N N 57 
IXJ C2  H20 SING N N 58 
IXJ C2  H21 SING N N 59 
IXJ N4  H22 SING N N 60 
IXJ N   H23 SING N N 61 
IXJ C10 H24 SING N N 62 
IXJ C10 H25 SING N N 63 
IXJ C11 H26 SING N N 64 
IXJ C11 H27 SING N N 65 
IXJ C13 H28 SING N N 66 
IXJ C13 H29 SING N N 67 
IXJ C14 H30 SING N N 68 
IXJ C14 H31 SING N N 69 
IXJ C15 H32 SING N N 70 
IXJ C15 H33 SING N N 71 
IXJ C16 H34 SING N N 72 
IXJ C16 H35 SING N N 73 
IXJ C17 H36 SING N N 74 
IXJ C20 H37 SING N N 75 
IXJ C20 H38 SING N N 76 
IXJ C22 H39 SING N N 77 
IXJ C23 H40 SING N N 78 
IXJ C24 H41 SING N N 79 
IXJ C25 H42 SING N N 80 
IXJ C29 H43 SING N N 81 
IXJ N5  H44 SING N N 82 
IXJ N6  H45 SING N N 83 
IXJ N6  H46 SING N N 84 
IXJ N7  H47 SING N N 85 
IXJ O2  H48 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IXJ InChI            InChI                1.06  "InChI=1S/C27H46N8O5/c28-15-7-4-12-20(24(37)32-17-9-6-14-22(26(39)40)35-27(30)31)34-25(38)21(13-5-8-16-29)33-23(36)18-19-10-2-1-3-11-19/h1-3,10-11,20-22H,4-9,12-18,28-29H2,(H,32,37)(H,33,36)(H,34,38)(H,39,40)(H4,30,31,35)/t20-,21-,22+/m0/s1" 
IXJ InChIKey         InChI                1.06  XTCNOWZXILHRRG-FDFHNCONSA-N                                                                                                                                                                                                                       
IXJ SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@H](NC(=O)[C@H](CCCCN)NC(=O)Cc1ccccc1)C(=O)NCCCC[C@@H](NC(N)=N)C(O)=O"                                                                                                                                                                    
IXJ SMILES           CACTVS               3.385 "NCCCC[CH](NC(=O)[CH](CCCCN)NC(=O)Cc1ccccc1)C(=O)NCCCC[CH](NC(N)=N)C(O)=O"                                                                                                                                                                        
IXJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H](CCCCNC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc1ccccc1)C(=O)O"                                                                                                                                                               
IXJ SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(=O)NC(CCCCN)C(=O)NC(CCCCN)C(=O)NCCCCC(C(=O)O)NC(=N)N"                                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           IXJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-6-[[(2~{S})-6-azanyl-2-[[(2~{S})-6-azanyl-2-(2-phenylethanoylamino)hexanoyl]amino]hexanoyl]amino]-2-carbamimidamido-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IXJ "Create component"  2022-04-20 PDBE 
IXJ "Modify descriptor" 2022-08-22 RCSB 
IXJ "Initial release"   2022-12-28 RCSB 
# 
