data_JSJ
# 
_chem_comp.id                                    JSJ 
_chem_comp.name                                  "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl]disulfanyl}phosphoryl]oxy}phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H30 N6 O10 P2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-20 
_chem_comp.pdbx_modified_date                    2018-11-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        628.553 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JSJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6MI6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JSJ "C1'" C1  C 0 1 N N R 12.335 19.047 57.871 4.980  0.186  0.613  "C1'" JSJ 1  
JSJ C10   C2  C 0 1 N N N 12.172 22.040 65.830 -5.159 -3.396 0.488  C10   JSJ 2  
JSJ C11   C3  C 0 1 N N N 13.454 21.257 66.023 -4.679 -2.149 -0.219 C11   JSJ 3  
JSJ C12   C4  C 0 1 N N N 13.382 20.471 67.102 -5.697 -1.356 -0.444 C12   JSJ 4  
JSJ C13   C5  C 0 1 N N N 14.419 19.951 67.314 -5.621 -0.016 -1.128 C13   JSJ 5  
JSJ C14   C6  C 0 1 N N N 12.049 20.613 67.814 -6.959 -1.994 0.090  C14   JSJ 6  
JSJ C15   C7  C 0 1 N N N 11.277 19.302 67.852 -7.798 -0.959 0.842  C15   JSJ 7  
JSJ C16   C8  C 0 1 N N N 12.250 21.179 69.220 -7.771 -2.601 -1.056 C16   JSJ 8  
JSJ C17   C9  C 0 1 N N N 12.465 23.534 65.898 -5.259 -4.560 -0.500 C17   JSJ 9  
JSJ C18   C10 C 0 1 N N N 11.514 21.660 64.509 -4.211 -3.754 1.634  C18   JSJ 10 
JSJ C2    C11 C 0 1 Y N N 8.124  18.289 56.699 7.523  -3.446 1.313  C2    JSJ 11 
JSJ "C2'" C12 C 0 1 N N R 11.536 19.763 58.937 6.031  1.286  0.345  "C2'" JSJ 12 
JSJ "C3'" C13 C 0 1 N N S 12.561 20.151 59.964 5.216  2.599  0.376  "C3'" JSJ 13 
JSJ C4    C14 C 0 1 Y N N 10.317 17.745 57.292 6.091  -2.047 0.184  C4    JSJ 14 
JSJ "C4'" C15 C 0 1 N N R 13.721 19.189 59.754 3.770  2.136  0.659  "C4'" JSJ 15 
JSJ C5    C16 C 0 1 Y N N 9.995  16.331 57.173 6.069  -2.954 -0.890 C5    JSJ 16 
JSJ "C5'" C17 C 0 1 N N N 13.689 17.994 60.705 2.774  2.994  -0.125 "C5'" JSJ 17 
JSJ C6    C18 C 0 1 Y N N 8.601  16.007 56.788 6.822  -4.135 -0.775 C6    JSJ 18 
JSJ C8    C19 C 0 1 Y N N 12.090 16.572 57.748 4.790  -1.288 -1.426 C8    JSJ 19 
JSJ N1    N1  N 0 1 Y N N 7.747  17.018 56.571 7.530  -4.331 0.333  N1    JSJ 20 
JSJ N10   N2  N 0 1 N N N 11.338 21.587 66.961 -6.501 -3.056 1.017  N10   JSJ 21 
JSJ N3    N3  N 0 1 Y N N 9.359  18.655 57.043 6.825  -2.332 1.255  N3    JSJ 22 
JSJ N6    N4  N 0 1 N N N 8.165  14.736 56.647 6.840  -5.066 -1.800 N6    JSJ 23 
JSJ N7    N5  N 0 1 Y N N 11.129 15.664 57.466 5.257  -2.430 -1.839 N7    JSJ 24 
JSJ N9    N6  N 0 1 Y N N 11.597 17.805 57.629 5.275  -1.007 -0.184 N9    JSJ 25 
JSJ O1A   O1  O 0 1 N N N 16.703 15.688 61.498 0.192  3.234  -1.869 O1A   JSJ 26 
JSJ O1B   O2  O 0 1 N N N 13.679 16.552 64.523 -3.346 3.974  -0.412 O1B   JSJ 27 
JSJ "O2'" O3  O 0 1 N N N 10.935 20.935 58.374 7.025  1.289  1.372  "O2'" JSJ 28 
JSJ O2A   O4  O 0 1 N N N 14.192 15.340 62.090 0.094  4.877  0.043  O2A   JSJ 29 
JSJ O2B   O5  O 0 1 N N N 15.631 14.963 64.393 -2.736 1.911  -1.732 O2B   JSJ 30 
JSJ "O3'" O6  O 0 1 N N N 12.959 21.490 59.663 5.685  3.454  1.420  "O3'" JSJ 31 
JSJ O3A   O7  O 0 1 N N N 15.625 17.068 63.224 -1.186 2.583  0.143  O3A   JSJ 32 
JSJ "O4'" O8  O 0 1 N N N 13.603 18.708 58.423 3.724  0.767  0.201  "O4'" JSJ 33 
JSJ "O5'" O9  O 0 1 N N N 14.986 17.394 60.793 1.441  2.628  0.238  "O5'" JSJ 34 
JSJ O6    O10 O 0 1 N N N 9.977  22.076 67.221 -7.393 -4.214 0.968  O6    JSJ 35 
JSJ PA    P1  P 0 1 N N N 15.367 16.254 61.871 0.136  3.328  -0.394 PA    JSJ 36 
JSJ PB    P2  P 0 1 N N N 15.173 16.377 64.594 -2.708 2.497  -0.373 PB    JSJ 37 
JSJ S1    S1  S 0 1 N N N 16.082 17.287 65.963 -3.833 1.276  0.946  S1    JSJ 38 
JSJ S2    S2  S 0 1 N N N 15.232 19.166 66.028 -5.707 1.303  0.114  S2    JSJ 39 
JSJ H1    H1  H 0 1 N N N 12.420 19.658 56.960 4.952  -0.063 1.674  H1    JSJ 40 
JSJ H2    H2  H 0 1 N N N 14.314 21.325 65.374 -3.656 -1.944 -0.495 H2    JSJ 41 
JSJ H3    H3  H 0 1 N N N 14.247 19.196 68.095 -4.681 0.060  -1.675 H3    JSJ 42 
JSJ H4    H4  H 0 1 N N N 15.097 20.728 67.697 -6.455 0.084  -1.823 H4    JSJ 43 
JSJ H5    H5  H 0 1 N N N 11.810 18.580 68.488 -8.067 -0.148 0.166  H5    JSJ 44 
JSJ H6    H6  H 0 1 N N N 10.272 19.480 68.263 -8.704 -1.432 1.221  H6    JSJ 45 
JSJ H7    H7  H 0 1 N N N 11.190 18.898 66.833 -7.221 -0.560 1.676  H7    JSJ 46 
JSJ H8    H8  H 0 1 N N N 12.780 20.441 69.840 -7.134 -3.264 -1.641 H8    JSJ 47 
JSJ H9    H9  H 0 1 N N N 12.844 22.103 69.162 -8.607 -3.169 -0.647 H9    JSJ 48 
JSJ H10   H10 H 0 1 N N N 11.271 21.400 69.670 -8.151 -1.804 -1.695 H10   JSJ 49 
JSJ H11   H11 H 0 1 N N N 12.938 23.772 66.862 -4.281 -4.741 -0.948 H11   JSJ 50 
JSJ H12   H12 H 0 1 N N N 13.143 23.812 65.078 -5.589 -5.456 0.025  H12   JSJ 51 
JSJ H13   H13 H 0 1 N N N 11.525 24.097 65.803 -5.976 -4.312 -1.283 H13   JSJ 52 
JSJ H14   H14 H 0 1 N N N 11.317 20.578 64.495 -3.223 -3.979 1.231  H14   JSJ 53 
JSJ H15   H15 H 0 1 N N N 10.565 22.206 64.402 -4.140 -2.913 2.323  H15   JSJ 54 
JSJ H16   H16 H 0 1 N N N 12.184 21.922 63.677 -4.594 -4.626 2.164  H16   JSJ 55 
JSJ H17   H17 H 0 1 N N N 7.393  19.062 56.515 8.109  -3.647 2.198  H17   JSJ 56 
JSJ H18   H18 H 0 1 N N N 10.784 19.089 59.374 6.491  1.144  -0.632 H18   JSJ 57 
JSJ H19   H19 H 0 1 N N N 12.156 20.057 60.982 5.274  3.106  -0.587 H19   JSJ 58 
JSJ H20   H20 H 0 1 N N N 14.669 19.731 59.888 3.556  2.189  1.726  H20   JSJ 59 
JSJ H21   H21 H 0 1 N N N 13.378 18.333 61.704 2.938  4.046  0.108  H21   JSJ 60 
JSJ H22   H22 H 0 1 N N N 12.970 17.251 60.330 2.917  2.831  -1.193 H22   JSJ 61 
JSJ H23   H23 H 0 1 N N N 13.106 16.334 58.028 4.117  -0.655 -1.986 H23   JSJ 62 
JSJ H24   H24 H 0 1 N N N 7.201  14.741 56.383 6.328  -4.906 -2.608 H24   JSJ 63 
JSJ H25   H25 H 0 1 N N N 8.702  14.276 55.940 7.363  -5.877 -1.709 H25   JSJ 64 
JSJ H26   H26 H 0 1 N N N 13.269 15.711 64.358 -3.361 4.419  0.446  H26   JSJ 65 
JSJ H27   H27 H 0 1 N N N 10.433 21.386 59.042 7.710  1.961  1.254  H27   JSJ 66 
JSJ H28   H28 H 0 1 N N N 14.461 14.439 61.954 0.057  5.015  1.000  H28   JSJ 67 
JSJ H29   H29 H 0 1 N N N 13.610 21.776 60.292 6.608  3.726  1.322  H29   JSJ 68 
JSJ H30   H30 H 0 1 N N N 9.630  21.651 67.997 -7.082 -4.972 1.482  H30   JSJ 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JSJ N1    C2    DOUB Y N 1  
JSJ N1    C6    SING Y N 2  
JSJ N6    C6    SING N N 3  
JSJ C2    N3    SING Y N 4  
JSJ C6    C5    DOUB Y N 5  
JSJ N3    C4    DOUB Y N 6  
JSJ C5    C4    SING Y N 7  
JSJ C5    N7    SING Y N 8  
JSJ C4    N9    SING Y N 9  
JSJ N7    C8    DOUB Y N 10 
JSJ N9    C8    SING Y N 11 
JSJ N9    "C1'" SING N N 12 
JSJ "C1'" "O4'" SING N N 13 
JSJ "C1'" "C2'" SING N N 14 
JSJ "O2'" "C2'" SING N N 15 
JSJ "O4'" "C4'" SING N N 16 
JSJ "C2'" "C3'" SING N N 17 
JSJ "O3'" "C3'" SING N N 18 
JSJ "C4'" "C3'" SING N N 19 
JSJ "C4'" "C5'" SING N N 20 
JSJ "C5'" "O5'" SING N N 21 
JSJ "O5'" PA    SING N N 22 
JSJ O1A   PA    DOUB N N 23 
JSJ PA    O2A   SING N N 24 
JSJ PA    O3A   SING N N 25 
JSJ O3A   PB    SING N N 26 
JSJ O2B   PB    DOUB N N 27 
JSJ C18   C10   SING N N 28 
JSJ O1B   PB    SING N N 29 
JSJ PB    S1    SING N N 30 
JSJ C10   C17   SING N N 31 
JSJ C10   C11   SING N N 32 
JSJ C10   N10   SING N N 33 
JSJ S1    S2    SING N N 34 
JSJ C11   C12   DOUB N N 35 
JSJ S2    C13   SING N N 36 
JSJ N10   O6    SING N N 37 
JSJ N10   C14   SING N N 38 
JSJ C12   C13   SING N N 39 
JSJ C12   C14   SING N N 40 
JSJ C14   C15   SING N N 41 
JSJ C14   C16   SING N N 42 
JSJ "C1'" H1    SING N N 43 
JSJ C11   H2    SING N N 44 
JSJ C13   H3    SING N N 45 
JSJ C13   H4    SING N N 46 
JSJ C15   H5    SING N N 47 
JSJ C15   H6    SING N N 48 
JSJ C15   H7    SING N N 49 
JSJ C16   H8    SING N N 50 
JSJ C16   H9    SING N N 51 
JSJ C16   H10   SING N N 52 
JSJ C17   H11   SING N N 53 
JSJ C17   H12   SING N N 54 
JSJ C17   H13   SING N N 55 
JSJ C18   H14   SING N N 56 
JSJ C18   H15   SING N N 57 
JSJ C18   H16   SING N N 58 
JSJ C2    H17   SING N N 59 
JSJ "C2'" H18   SING N N 60 
JSJ "C3'" H19   SING N N 61 
JSJ "C4'" H20   SING N N 62 
JSJ "C5'" H21   SING N N 63 
JSJ "C5'" H22   SING N N 64 
JSJ C8    H23   SING N N 65 
JSJ N6    H24   SING N N 66 
JSJ N6    H25   SING N N 67 
JSJ O1B   H26   SING N N 68 
JSJ "O2'" H27   SING N N 69 
JSJ O2A   H28   SING N N 70 
JSJ "O3'" H29   SING N N 71 
JSJ O6    H30   SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JSJ SMILES           ACDLabs              12.01 "C1(OC(C(C1O)O)COP(=O)(O)OP(O)(=O)SSCC2=CC(C)(N(C2(C)C)O)C)n3c4c(nc3)c(ncn4)N" 
JSJ InChI            InChI                1.03  
"InChI=1S/C19H30N6O10P2S2/c1-18(2)5-10(19(3,4)25(18)28)7-38-39-37(31,32)35-36(29,30)33-6-11-13(26)14(27)17(34-11)24-9-23-12-15(20)21-8-22-16(12)24/h5,8-9,11,13-14,17,26-28H,6-7H2,1-4H3,(H,29,30)(H,31,32)(H2,20,21,22)/t11-,13-,14-,17-/m1/s1" 
JSJ InChIKey         InChI                1.03  FXTBVPRAZDKBSQ-LSCFUAHRSA-N 
JSJ SMILES_CANONICAL CACTVS               3.385 "CC1(C)C=C(CSS[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(C)(C)N1O" 
JSJ SMILES           CACTVS               3.385 "CC1(C)C=C(CSS[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(C)(C)N1O" 
JSJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1(C=C(C(N1O)(C)C)CSSP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)C" 
JSJ SMILES           "OpenEye OEToolkits" 2.0.6 "CC1(C=C(C(N1O)(C)C)CSSP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JSJ "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl]disulfanyl}phosphoryl]oxy}phosphoryl]adenosine"                                              
JSJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-[(2,2,5,5-tetramethyl-1-oxidanyl-pyrrol-3-yl)methyldisulfanyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JSJ "Create component" 2018-09-20 RCSB 
JSJ "Initial release"  2018-12-05 RCSB 
# 
