data_VBJ
# 
_chem_comp.id                                    VBJ 
_chem_comp.name                                  "~{N}-[3-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]phenyl]methanesulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H17 N5 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-01 
_chem_comp.pdbx_modified_date                    2024-03-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        343.403 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VBJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8COX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VBJ N1  N1  N 0 1 N N N N N N 38.772 -12.531 10.406 3.230  -0.341 0.946  N1  VBJ 1  
VBJ N3  N2  N 0 1 N N N N N N 33.824 -8.658  15.546 -2.396 -4.505 -0.120 N3  VBJ 2  
VBJ C4  C1  C 0 1 Y N N N N N 35.122 -12.029 10.150 0.833  1.780  -0.867 C4  VBJ 3  
VBJ C5  C2  C 0 1 Y N N N N N 34.918 -11.016 11.060 -0.311 1.009  -0.801 C5  VBJ 4  
VBJ C6  C3  C 0 1 Y N N N N N 35.983 -10.472 11.767 -0.285 -0.224 -0.149 C6  VBJ 5  
VBJ C7  C4  C 0 1 Y N N N N N 35.760 -9.319  12.673 -1.511 -1.052 -0.077 C7  VBJ 6  
VBJ C8  C5  C 0 1 Y N N N N N 34.646 -8.456  14.513 -2.524 -3.129 -0.064 C8  VBJ 7  
VBJ C10 C6  C 0 1 Y N N N N N 36.289 -8.051  12.481 -2.776 -0.449 0.040  C10 VBJ 8  
VBJ C13 C7  C 0 1 N N N N N N 39.045 -7.202  9.671  -3.158 3.609  0.188  C13 VBJ 9  
VBJ C15 C8  C 0 1 N N N N N N 39.146 -8.004  8.435  -2.053 4.397  0.892  C15 VBJ 10 
VBJ C1  C9  C 0 1 N N N N N N 39.148 -11.111 8.182  4.387  -1.276 -1.361 C1  VBJ 11 
VBJ C11 C10 C 0 1 N N N N N N 37.192 -7.809  11.411 -2.910 0.976  0.092  C11 VBJ 12 
VBJ C12 C11 C 0 1 N N N N N N 38.038 -7.585  10.616 -3.020 2.144  0.134  C12 VBJ 13 
VBJ C14 C12 C 0 1 N N N N N N 38.575 -6.661  8.377  -2.172 4.442  -0.633 C14 VBJ 14 
VBJ C16 C13 C 0 1 Y N N N N N 37.264 -10.961 11.524 0.898  -0.674 0.434  C16 VBJ 15 
VBJ C2  C14 C 0 1 Y N N N N N 37.470 -11.988 10.617 2.042  0.106  0.363  C2  VBJ 16 
VBJ C3  C15 C 0 1 Y N N N N N 36.391 -12.521 9.935  2.007  1.331  -0.294 C3  VBJ 17 
VBJ C9  C16 C 0 1 Y N N N N N 35.993 -7.019  13.375 -3.906 -1.286 0.103  C9  VBJ 18 
VBJ N2  N3  N 0 1 Y N N N N N 34.905 -9.486  13.682 -1.434 -2.381 -0.127 N2  VBJ 19 
VBJ N4  N4  N 0 1 Y N N N N N 35.163 -7.230  14.388 -3.735 -2.602 0.051  N4  VBJ 20 
VBJ N5  N5  N 0 1 N N N N N N 36.487 -5.788  13.208 -5.175 -0.747 0.219  N5  VBJ 21 
VBJ O1  O1  O 0 1 N N N N N N 40.437 -10.737 10.396 4.748  1.129  -0.262 O1  VBJ 22 
VBJ O2  O2  O 0 1 N N N N N N 40.895 -12.734 9.109  5.613  -0.836 0.968  O2  VBJ 23 
VBJ S1  S1  S 0 1 N N N N N N 39.947 -11.789 9.582  4.654  -0.241 0.105  S1  VBJ 24 
VBJ H4  H1  H 0 1 N N N N N N 38.628 -13.405 9.941  3.222  -0.706 1.844  H4  VBJ 25 
VBJ H8  H2  H 0 1 N N N N N N 33.508 -9.607  15.541 -1.518 -4.907 -0.205 H8  VBJ 26 
VBJ H9  H3  H 0 1 N N N N N N 34.311 -8.474  16.400 -3.185 -5.068 -0.076 H9  VBJ 27 
VBJ H6  H4  H 0 1 N N N N N N 34.285 -12.439 9.604  0.810  2.734  -1.372 H6  VBJ 28 
VBJ H7  H5  H 0 1 N N N N N N 33.919 -10.640 11.226 -1.226 1.361  -1.253 H7  VBJ 29 
VBJ H12 H6  H 0 1 N N N N N N 39.983 -6.786  10.068 -4.179 3.981  0.279  H12 VBJ 30 
VBJ H16 H7  H 0 1 N N N N N N 38.498 -8.882  8.296  -2.345 5.289  1.446  H16 VBJ 31 
VBJ H15 H8  H 0 1 N N N N N N 40.131 -8.201  7.988  -1.223 3.831  1.317  H15 VBJ 32 
VBJ H1  H9  H 0 1 N N N N N N 38.402 -10.371 8.507  4.082  -2.275 -1.049 H1  VBJ 33 
VBJ H2  H10 H 0 1 N N N N N N 39.892 -10.622 7.536  3.607  -0.835 -1.980 H2  VBJ 34 
VBJ H3  H11 H 0 1 N N N N N N 38.647 -11.914 7.621  5.313  -1.340 -1.933 H3  VBJ 35 
VBJ H13 H12 H 0 1 N N N N N N 39.131 -5.848  7.887  -1.421 3.905  -1.212 H13 VBJ 36 
VBJ H14 H13 H 0 1 N N N N N N 37.498 -6.530  8.195  -2.543 5.363  -1.082 H14 VBJ 37 
VBJ H17 H14 H 0 1 N N N N N N 38.106 -10.535 12.048 0.924  -1.628 0.940  H17 VBJ 38 
VBJ H5  H15 H 0 1 N N N N N N 36.544 -13.326 9.231  2.899  1.938  -0.349 H5  VBJ 39 
VBJ H11 H16 H 0 1 N N N N N N 36.128 -5.185  13.920 -5.291 0.216  0.257  H11 VBJ 40 
VBJ H10 H17 H 0 1 N N N N N N 37.485 -5.818  13.269 -5.948 -1.330 0.262  H10 VBJ 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VBJ C1  S1  SING N N 1  
VBJ C14 C15 SING N N 2  
VBJ C14 C13 SING N N 3  
VBJ C15 C13 SING N N 4  
VBJ O2  S1  DOUB N N 5  
VBJ S1  O1  DOUB N N 6  
VBJ S1  N1  SING N N 7  
VBJ C13 C12 SING N N 8  
VBJ C3  C4  DOUB Y N 9  
VBJ C3  C2  SING Y N 10 
VBJ C4  C5  SING Y N 11 
VBJ N1  C2  SING N N 12 
VBJ C12 C11 TRIP N N 13 
VBJ C2  C16 DOUB Y N 14 
VBJ C5  C6  DOUB Y N 15 
VBJ C11 C10 SING N N 16 
VBJ C16 C6  SING Y N 17 
VBJ C6  C7  SING N N 18 
VBJ C10 C7  DOUB Y N 19 
VBJ C10 C9  SING Y N 20 
VBJ C7  N2  SING Y N 21 
VBJ N5  C9  SING N N 22 
VBJ C9  N4  DOUB Y N 23 
VBJ N2  C8  DOUB Y N 24 
VBJ N4  C8  SING Y N 25 
VBJ C8  N3  SING N N 26 
VBJ N1  H4  SING N N 27 
VBJ N3  H8  SING N N 28 
VBJ N3  H9  SING N N 29 
VBJ C4  H6  SING N N 30 
VBJ C5  H7  SING N N 31 
VBJ C13 H12 SING N N 32 
VBJ C15 H16 SING N N 33 
VBJ C15 H15 SING N N 34 
VBJ C1  H1  SING N N 35 
VBJ C1  H2  SING N N 36 
VBJ C1  H3  SING N N 37 
VBJ C14 H13 SING N N 38 
VBJ C14 H14 SING N N 39 
VBJ C16 H17 SING N N 40 
VBJ C3  H5  SING N N 41 
VBJ N5  H11 SING N N 42 
VBJ N5  H10 SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VBJ InChI            InChI                1.06  "InChI=1S/C16H17N5O2S/c1-24(22,23)21-12-4-2-3-11(9-12)14-13(8-7-10-5-6-10)15(17)20-16(18)19-14/h2-4,9-10,21H,5-6H2,1H3,(H4,17,18,19,20)" 
VBJ InChIKey         InChI                1.06  CVABKGUTTDGMDK-UHFFFAOYSA-N                                                                                                              
VBJ SMILES_CANONICAL CACTVS               3.385 "C[S](=O)(=O)Nc1cccc(c1)c2nc(N)nc(N)c2C#CC3CC3"                                                                                          
VBJ SMILES           CACTVS               3.385 "C[S](=O)(=O)Nc1cccc(c1)c2nc(N)nc(N)c2C#CC3CC3"                                                                                          
VBJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)Nc1cccc(c1)c2c(c(nc(n2)N)N)C#CC3CC3"                                                                                          
VBJ SMILES           "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)Nc1cccc(c1)c2c(c(nc(n2)N)N)C#CC3CC3"                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           VBJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]phenyl]methanesulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VBJ "Create component" 2023-03-01 PDBE 
VBJ "Initial release"  2024-03-13 RCSB 
# 
