data_VMJ
#

_chem_comp.id                                   VMJ
_chem_comp.name                                 "5-[4-(hydroxymethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H20 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-27
_chem_comp.pdbx_modified_date                   2020-12-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       392.474
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VMJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JWV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VMJ  O11  O1   O  0  1  N  N  N  15.130  146.611  17.670  -3.744  -1.112   0.084  O11  VMJ   1  
VMJ  C1   C1   C  0  1  N  N  N  15.808  146.618  16.620  -2.923  -0.212   0.062  C1   VMJ   2  
VMJ  N2   N1   N  0  1  N  N  N  16.133  147.849  15.989  -1.599  -0.482   0.038  N2   VMJ   3  
VMJ  C12  C2   C  0  1  Y  N  N  15.600  149.043  16.498  -1.158  -1.812   0.038  C12  VMJ   4  
VMJ  C13  C3   C  0  1  Y  N  N  14.276  149.240  16.125  -0.960  -2.479  -1.163  C13  VMJ   5  
VMJ  C14  C4   C  0  1  Y  N  N  13.583  150.365  16.512  -0.525  -3.790  -1.160  C14  VMJ   6  
VMJ  C15  C5   C  0  1  Y  N  N  14.207  151.334  17.287  -0.287  -4.438   0.038  C15  VMJ   7  
VMJ  C27  C6   C  0  1  N  N  N  13.360  152.527  17.669   0.186  -5.869   0.037  C27  VMJ   8  
VMJ  O27  O2   O  0  1  N  N  N  13.627  152.977  19.000   1.615  -5.898   0.013  O27  VMJ   9  
VMJ  C16  C7   C  0  1  Y  N  N  15.551  151.149  17.666  -0.483  -3.777   1.236  C16  VMJ  10  
VMJ  C17  C8   C  0  1  Y  N  N  16.250  150.002  17.267  -0.913  -2.464   1.239  C17  VMJ  11  
VMJ  C3   C9   C  0  1  N  N  N  16.878  147.875  14.784  -0.688   0.537   0.014  C3   VMJ  12  
VMJ  N4   N2   N  0  1  N  N  N  17.367  146.707  14.207  -1.053   1.799   0.014  N4   VMJ  13  
VMJ  C5   C10  C  0  1  Y  N  N  17.114  145.475  14.785  -2.347   2.147   0.037  C5   VMJ  14  
VMJ  N9   N3   N  0  1  Y  N  N  17.430  144.214  14.485  -3.003   3.338   0.043  N9   VMJ  15  
VMJ  C10  C11  C  0  1  N  N  N  18.215  143.642  13.364  -2.378   4.662   0.023  C10  VMJ  16  
VMJ  N8   N4   N  0  1  Y  N  N  16.906  143.277  15.413  -4.379   3.081   0.072  N8   VMJ  17  
VMJ  C7   C12  C  0  1  Y  N  N  16.236  143.981  16.354  -4.583   1.794   0.084  C7   VMJ  18  
VMJ  C6   C13  C  0  1  Y  N  N  16.321  145.361  16.017  -3.332   1.145   0.056  C6   VMJ  19  
VMJ  S18  S1   S  0  1  N  N  N  17.223  149.355  14.022   1.030   0.145  -0.018  S18  VMJ  20  
VMJ  C19  C14  C  0  1  N  N  R  18.465  149.131  12.778   1.732   1.813  -0.042  C19  VMJ  21  
VMJ  C26  C15  C  0  1  N  N  N  19.861  149.219  13.412   1.342   2.512  -1.347  C26  VMJ  22  
VMJ  C20  C16  C  0  1  Y  N  N  18.282  150.153  11.714   3.234   1.728   0.052  C20  VMJ  23  
VMJ  C21  C17  C  0  1  Y  N  N  18.005  149.778  10.397   3.950   1.055  -0.919  C21  VMJ  24  
VMJ  C22  C18  C  0  1  Y  N  N  17.836  150.756   9.406   5.328   0.981  -0.835  C22  VMJ  25  
VMJ  C23  C19  C  0  1  Y  N  N  17.945  152.108   9.729   5.990   1.580   0.220  C23  VMJ  26  
VMJ  C24  C20  C  0  1  Y  N  N  18.219  152.477  11.041   5.273   2.254   1.191  C24  VMJ  27  
VMJ  C25  C21  C  0  1  Y  N  N  18.390  151.507  12.024   3.895   2.327   1.108  C25  VMJ  28  
VMJ  H1   H1   H  0  1  N  N  N  13.781  148.496  15.519  -1.146  -1.974  -2.099  H1   VMJ  29  
VMJ  H2   H2   H  0  1  N  N  N  12.553  150.494  16.213  -0.371  -4.310  -2.095  H2   VMJ  30  
VMJ  H3   H3   H  0  1  N  N  N  13.570  153.349  16.969  -0.171  -6.371   0.937  H3   VMJ  31  
VMJ  H4   H4   H  0  1  N  N  N  12.299  152.246  17.597  -0.202  -6.380  -0.843  H4   VMJ  32  
VMJ  H5   H5   H  0  1  N  N  N  13.076  153.725  19.198   1.991  -6.789   0.011  H5   VMJ  33  
VMJ  H6   H6   H  0  1  N  N  N  16.046  151.896  18.268  -0.296  -4.286   2.170  H6   VMJ  34  
VMJ  H7   H7   H  0  1  N  N  N  17.282  149.864  17.554  -1.062  -1.946   2.175  H7   VMJ  35  
VMJ  H8   H8   H  0  1  N  N  N  18.249  142.547  13.461  -2.243   4.985  -1.010  H8   VMJ  36  
VMJ  H9   H9   H  0  1  N  N  N  17.740  143.911  12.409  -3.016   5.374   0.545  H9   VMJ  37  
VMJ  H10  H10  H  0  1  N  N  N  19.238  144.044  13.390  -1.407   4.614   0.517  H10  VMJ  38  
VMJ  H11  H11  H  0  1  N  N  N  15.726  143.568  17.211  -5.547   1.307   0.106  H11  VMJ  39  
VMJ  H12  H12  H  0  1  N  N  N  18.317  148.124  12.362   1.347   2.382   0.804  H12  VMJ  40  
VMJ  H13  H13  H  0  1  N  N  N  19.959  148.450  14.192   1.765   3.516  -1.362  H13  VMJ  41  
VMJ  H14  H14  H  0  1  N  N  N  20.626  149.056  12.638   1.728   1.943  -2.193  H14  VMJ  42  
VMJ  H15  H15  H  0  1  N  N  N  19.998  150.215  13.859   0.256   2.573  -1.415  H15  VMJ  43  
VMJ  H16  H16  H  0  1  N  N  N  17.921  148.732  10.141   3.434   0.586  -1.744  H16  VMJ  44  
VMJ  H17  H17  H  0  1  N  N  N  17.621  150.461   8.390   5.888   0.454  -1.594  H17  VMJ  45  
VMJ  H18  H18  H  0  1  N  N  N  17.818  152.862   8.966   7.066   1.522   0.286  H18  VMJ  46  
VMJ  H19  H19  H  0  1  N  N  N  18.300  153.523  11.299   5.790   2.723   2.016  H19  VMJ  47  
VMJ  H20  H20  H  0  1  N  N  N  18.609  151.807  13.038   3.336   2.857   1.865  H20  VMJ  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VMJ  C22  C23  DOUB  Y  N   1  
VMJ  C22  C21  SING  Y  N   2  
VMJ  C23  C24  SING  Y  N   3  
VMJ  C21  C20  DOUB  Y  N   4  
VMJ  C24  C25  DOUB  Y  N   5  
VMJ  C20  C25  SING  Y  N   6  
VMJ  C20  C19  SING  N  N   7  
VMJ  C19  C26  SING  N  N   8  
VMJ  C19  S18  SING  N  N   9  
VMJ  C10  N9   SING  N  N  10  
VMJ  S18  C3   SING  N  N  11  
VMJ  N4   C3   DOUB  N  N  12  
VMJ  N4   C5   SING  N  N  13  
VMJ  N9   C5   SING  Y  N  14  
VMJ  N9   N8   SING  Y  N  15  
VMJ  C3   N2   SING  N  N  16  
VMJ  C5   C6   DOUB  Y  N  17  
VMJ  N8   C7   DOUB  Y  N  18  
VMJ  N2   C12  SING  N  N  19  
VMJ  N2   C1   SING  N  N  20  
VMJ  C6   C7   SING  Y  N  21  
VMJ  C6   C1   SING  N  N  22  
VMJ  C13  C12  DOUB  Y  N  23  
VMJ  C13  C14  SING  Y  N  24  
VMJ  C12  C17  SING  Y  N  25  
VMJ  C14  C15  DOUB  Y  N  26  
VMJ  C1   O11  DOUB  N  N  27  
VMJ  C17  C16  DOUB  Y  N  28  
VMJ  C15  C16  SING  Y  N  29  
VMJ  C15  C27  SING  N  N  30  
VMJ  C27  O27  SING  N  N  31  
VMJ  C13  H1   SING  N  N  32  
VMJ  C14  H2   SING  N  N  33  
VMJ  C27  H3   SING  N  N  34  
VMJ  C27  H4   SING  N  N  35  
VMJ  O27  H5   SING  N  N  36  
VMJ  C16  H6   SING  N  N  37  
VMJ  C17  H7   SING  N  N  38  
VMJ  C10  H8   SING  N  N  39  
VMJ  C10  H9   SING  N  N  40  
VMJ  C10  H10  SING  N  N  41  
VMJ  C7   H11  SING  N  N  42  
VMJ  C19  H12  SING  N  N  43  
VMJ  C26  H13  SING  N  N  44  
VMJ  C26  H14  SING  N  N  45  
VMJ  C26  H15  SING  N  N  46  
VMJ  C21  H16  SING  N  N  47  
VMJ  C22  H17  SING  N  N  48  
VMJ  C23  H18  SING  N  N  49  
VMJ  C24  H19  SING  N  N  50  
VMJ  C25  H20  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VMJ  SMILES            ACDLabs               12.01  "O=C2N(c1ccc(cc1)CO)C(=Nc3c2cnn3C)SC(C)c4ccccc4"  
VMJ  InChI             InChI                 1.03   "InChI=1S/C21H20N4O2S/c1-14(16-6-4-3-5-7-16)28-21-23-19-18(12-22-24(19)2)20(27)25(21)17-10-8-15(13-26)9-11-17/h3-12,14,26H,13H2,1-2H3/t14-/m1/s1"  
VMJ  InChIKey          InChI                 1.03   CXENUIKHQIZUDG-CQSZACIVSA-N  
VMJ  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CO)cc3)c4ccccc4"  
VMJ  SMILES            CACTVS                3.385  "C[CH](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CO)cc3)c4ccccc4"  
VMJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CO"  
VMJ  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VMJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[4-(hydroxymethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one"  
VMJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[4-(hydroxymethyl)phenyl]-1-methyl-6-[(1~{R})-1-phenylethyl]sulfanyl-pyrazolo[3,4-d]pyrimidin-4-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VMJ  "Create component"  2020-08-27  RCSB  
VMJ  "Initial release"   2020-12-30  RCSB  
##
