data_ESK
# 
_chem_comp.id                                    ESK 
_chem_comp.name                                  "2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-[(1~{S})-2-oxidanyl-1-phenyl-ethyl]ethanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H28 Cl N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-04-11 
_chem_comp.pdbx_modified_date                    2018-05-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        521.995 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ESK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6G9K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ESK C2  C1  C  0 1 N N N -0.489 7.071  48.201 -6.011  2.585  -0.418 C2   ESK 1  
ESK C3  C2  C  0 1 N N S 0.371  8.281  48.573 -6.389  1.116  -0.615 C3   ESK 2  
ESK N4  N1  N  0 1 N N N 1.062  8.752  47.379 -5.736  0.302  0.413  N4   ESK 3  
ESK C5  C3  C  0 1 N N N 2.334  8.461  47.105 -4.473  -0.132 0.229  C5   ESK 4  
ESK C7  C4  C  0 1 N N N 2.769  8.742  45.680 -3.802  -0.969 1.287  C7   ESK 5  
ESK C10 C5  C  0 1 Y N N 6.368  9.536  45.276 -0.576  -2.423 -0.117 C10  ESK 6  
ESK C11 C6  C  0 1 Y N N 7.557  10.237 45.178 0.332   -3.236 -0.758 C11  ESK 7  
ESK C12 C7  C  0 1 Y N N 8.724  9.578  44.838 1.671   -2.892 -0.789 C12  ESK 8  
ESK C13 C8  C  0 1 Y N N 8.733  8.206  44.574 2.106   -1.720 -0.170 C13  ESK 9  
ESK C14 C9  C  0 1 Y N N 7.527  7.498  44.682 1.193   -0.895 0.479  C14  ESK 10 
ESK C15 C10 C  0 1 Y N N 6.348  8.174  45.018 -0.157  -1.241 0.502  C15  ESK 11 
ESK C16 C11 C  0 1 N N N 4.962  7.676  45.201 -1.339  -0.586 1.095  C16  ESK 12 
ESK O17 O1  O  0 1 N N N 4.540  6.527  45.124 -1.316  0.459  1.715  O17  ESK 13 
ESK C22 C12 C  0 1 N N N 12.653 9.683  41.789 6.967   1.965  -0.394 C22  ESK 14 
ESK C23 C13 C  0 1 N N N 13.949 10.388 41.459 7.115   3.329  -1.074 C23  ESK 15 
ESK C24 C14 C  0 1 N N N 13.581 11.684 40.792 8.585   3.757  -1.028 C24  ESK 16 
ESK C26 C15 C  0 1 N N N 11.621 10.803 39.839 8.956   2.534  1.002  C26  ESK 17 
ESK C27 C16 C  0 1 N N N 11.837 9.475  40.526 7.502   2.057  1.038  C27  ESK 18 
ESK C35 C17 C  0 1 Y N N -2.124 11.290 50.385 -10.626 0.679  -0.300 C35  ESK 19 
ESK C36 C18 C  0 1 Y N N -1.670 10.219 51.128 -10.027 0.729  -1.544 C36  ESK 20 
ESK C37 C19 C  0 1 Y N N -0.866 9.253  50.541 -8.656  0.869  -1.647 C37  ESK 21 
ESK O1  O2  O  0 1 N N N -1.371 7.371  47.130 -6.541  3.050  0.825  O1   ESK 22 
ESK O6  O3  O  0 1 N N N 3.114  7.996  47.931 -3.877  0.152  -0.789 O6   ESK 23 
ESK N8  N2  N  0 1 N N N 4.207  8.769  45.494 -2.445  -1.311 0.851  N8   ESK 24 
ESK C9  C20 C  0 1 N N N 4.984  10.006 45.598 -2.067  -2.509 0.094  C9   ESK 25 
ESK C18 C21 C  0 1 Y N N 10.024 7.544  44.243 3.543   -1.357 -0.199 C18  ESK 26 
ESK N19 N3  N  0 1 Y N N 10.862 8.270  43.485 3.917   -0.081 -0.268 N19  ESK 27 
ESK C20 C22 C  0 1 Y N N 12.054 7.707  43.206 5.199   0.245  -0.293 C20  ESK 28 
ESK N21 N4  N  0 1 N N N 12.917 8.407  42.445 5.553   1.582  -0.366 N21  ESK 29 
ESK O25 O4  O  0 1 N N N 12.862 11.459 39.572 9.027   3.795  0.330  O25  ESK 30 
ESK N28 N5  N  0 1 Y N N 12.482 6.496  43.595 6.153   -0.674 -0.250 N28  ESK 31 
ESK C29 C23 C  0 1 Y N N 11.635 5.809  44.359 5.856   -1.961 -0.179 C29  ESK 32 
ESK C30 C24 C  0 1 Y N N 10.383 6.288  44.703 4.527   -2.349 -0.146 C30  ESK 33 
ESK CL1 CL1 CL 0 0 N N N 9.356  5.313  45.690 4.093   -4.027 -0.047 CL31 ESK 34 
ESK C32 C25 C  0 1 Y N N -0.501 9.353  49.206 -7.883  0.962  -0.504 C32  ESK 35 
ESK C33 C26 C  0 1 Y N N -0.969 10.438 48.469 -8.482  0.912  0.741  C33  ESK 36 
ESK C34 C27 C  0 1 Y N N -1.775 11.398 49.056 -9.854  0.777  0.843  C34  ESK 37 
ESK H41 H1  H  0 1 N N N -1.081 6.769  49.078 -4.925  2.684  -0.410 H41  ESK 38 
ESK H40 H2  H  0 1 N N N 0.170  6.243  47.901 -6.424  3.179  -1.234 H40  ESK 39 
ESK H38 H3  H  0 1 N N N 1.115  7.958  49.316 -6.062  0.786  -1.601 H38  ESK 40 
ESK H42 H4  H  0 1 N N N 0.556  9.323  46.732 -6.212  0.075  1.227  H42  ESK 41 
ESK H43 H5  H  0 1 N N N 2.364  9.720  45.382 -3.753  -0.407 2.219  H43  ESK 42 
ESK H44 H6  H  0 1 N N N 2.351  7.959  45.031 -4.374  -1.884 1.443  H44  ESK 43 
ESK H47 H7  H  0 1 N N N 7.573  11.300 45.367 -0.002  -4.144 -1.237 H47  ESK 44 
ESK H48 H8  H  0 1 N N N 9.647  10.135 44.775 2.380   -3.532 -1.293 H48  ESK 45 
ESK H49 H9  H  0 1 N N N 7.508  6.433  44.506 1.528   0.013  0.958  H49  ESK 46 
ESK H51 H10 H  0 1 N N N 12.075 10.324 42.471 7.536   1.218  -0.948 H51  ESK 47 
ESK H52 H11 H  0 1 N N N 14.554 9.770  40.779 6.789   3.257  -2.111 H52  ESK 48 
ESK H53 H12 H  0 1 N N N 14.518 10.584 42.380 6.505   4.065  -0.550 H53  ESK 49 
ESK H54 H13 H  0 1 N N N 14.500 12.245 40.567 9.189   3.042  -1.587 H54  ESK 50 
ESK H55 H14 H  0 1 N N N 12.951 12.272 41.476 8.689   4.747  -1.473 H55  ESK 51 
ESK H57 H15 H  0 1 N N N 11.008 11.446 40.488 9.329   2.643  2.021  H57  ESK 52 
ESK H56 H16 H  0 1 N N N 11.094 10.633 38.888 9.565   1.804  0.469  H56  ESK 53 
ESK H58 H17 H  0 1 N N N 10.863 9.035  40.787 6.900   2.767  1.606  H58  ESK 54 
ESK H59 H18 H  0 1 N N N 12.376 8.796  39.849 7.451   1.077  1.511  H59  ESK 55 
ESK H63 H19 H  0 1 N N N -2.751 12.041 50.843 -11.697 0.569  -0.220 H63  ESK 56 
ESK H64 H20 H  0 1 N N N -1.942 10.133 52.170 -10.630 0.657  -2.437 H64  ESK 57 
ESK H65 H21 H  0 1 N N N -0.521 8.415  51.129 -8.188  0.908  -2.619 H65  ESK 58 
ESK H39 H22 H  0 1 N N N -1.890 6.603  46.922 -6.340  3.977  1.016  H39  ESK 59 
ESK H45 H23 H  0 1 N N N 4.931  10.426 46.613 -2.582  -2.511 -0.867 H45  ESK 60 
ESK H46 H24 H  0 1 N N N 4.638  10.757 44.872 -2.315  -3.411 0.653  H46  ESK 61 
ESK H50 H25 H  0 1 N N N 13.179 7.784  41.708 4.865   2.265  -0.398 H50  ESK 62 
ESK H60 H26 H  0 1 N N N 11.937 4.839  44.725 6.642   -2.702 -0.145 H60  ESK 63 
ESK H61 H27 H  0 1 N N N -0.700 10.531 47.427 -7.879  0.988  1.634  H61  ESK 64 
ESK H62 H28 H  0 1 N N N -2.131 12.233 48.471 -10.322 0.738  1.816  H62  ESK 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ESK O25 C26 SING N N 1  
ESK O25 C24 SING N N 2  
ESK C26 C27 SING N N 3  
ESK C27 C22 SING N N 4  
ESK C24 C23 SING N N 5  
ESK C23 C22 SING N N 6  
ESK C22 N21 SING N N 7  
ESK N21 C20 SING N N 8  
ESK C20 N19 DOUB Y N 9  
ESK C20 N28 SING Y N 10 
ESK N19 C18 SING Y N 11 
ESK N28 C29 DOUB Y N 12 
ESK C18 C13 SING N N 13 
ESK C18 C30 DOUB Y N 14 
ESK C29 C30 SING Y N 15 
ESK C13 C14 DOUB Y N 16 
ESK C13 C12 SING Y N 17 
ESK C14 C15 SING Y N 18 
ESK C30 CL1 SING N N 19 
ESK C12 C11 DOUB Y N 20 
ESK C15 C16 SING N N 21 
ESK C15 C10 DOUB Y N 22 
ESK O17 C16 DOUB N N 23 
ESK C11 C10 SING Y N 24 
ESK C16 N8  SING N N 25 
ESK C10 C9  SING N N 26 
ESK N8  C9  SING N N 27 
ESK N8  C7  SING N N 28 
ESK C7  C5  SING N N 29 
ESK C5  N4  SING N N 30 
ESK C5  O6  DOUB N N 31 
ESK O1  C2  SING N N 32 
ESK N4  C3  SING N N 33 
ESK C2  C3  SING N N 34 
ESK C33 C34 DOUB Y N 35 
ESK C33 C32 SING Y N 36 
ESK C3  C32 SING N N 37 
ESK C34 C35 SING Y N 38 
ESK C32 C37 DOUB Y N 39 
ESK C35 C36 DOUB Y N 40 
ESK C37 C36 SING Y N 41 
ESK C2  H41 SING N N 42 
ESK C2  H40 SING N N 43 
ESK C3  H38 SING N N 44 
ESK N4  H42 SING N N 45 
ESK C7  H43 SING N N 46 
ESK C7  H44 SING N N 47 
ESK C11 H47 SING N N 48 
ESK C12 H48 SING N N 49 
ESK C14 H49 SING N N 50 
ESK C22 H51 SING N N 51 
ESK C23 H52 SING N N 52 
ESK C23 H53 SING N N 53 
ESK C24 H54 SING N N 54 
ESK C24 H55 SING N N 55 
ESK C26 H57 SING N N 56 
ESK C26 H56 SING N N 57 
ESK C27 H58 SING N N 58 
ESK C27 H59 SING N N 59 
ESK C35 H63 SING N N 60 
ESK C36 H64 SING N N 61 
ESK C37 H65 SING N N 62 
ESK O1  H39 SING N N 63 
ESK C9  H45 SING N N 64 
ESK C9  H46 SING N N 65 
ESK N21 H50 SING N N 66 
ESK C29 H60 SING N N 67 
ESK C33 H61 SING N N 68 
ESK C34 H62 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ESK InChI            InChI                1.03  
"InChI=1S/C27H28ClN5O4/c28-22-13-29-27(30-20-8-10-37-11-9-20)32-25(22)18-6-7-19-14-33(26(36)21(19)12-18)15-24(35)31-23(16-34)17-4-2-1-3-5-17/h1-7,12-13,20,23,34H,8-11,14-16H2,(H,31,35)(H,29,30,32)/t23-/m1/s1" 
ESK InChIKey         InChI                1.03  MWUVKGXBEJSWSJ-HSZRJFAPSA-N 
ESK SMILES_CANONICAL CACTVS               3.385 "OC[C@@H](NC(=O)CN1Cc2ccc(cc2C1=O)c3nc(NC4CCOCC4)ncc3Cl)c5ccccc5" 
ESK SMILES           CACTVS               3.385 "OC[CH](NC(=O)CN1Cc2ccc(cc2C1=O)c3nc(NC4CCOCC4)ncc3Cl)c5ccccc5" 
ESK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)[C@@H](CO)NC(=O)CN2Cc3ccc(cc3C2=O)c4c(cnc(n4)NC5CCOCC5)Cl" 
ESK SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)C(CO)NC(=O)CN2Cc3ccc(cc3C2=O)c4c(cnc(n4)NC5CCOCC5)Cl" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ESK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-[(1~{S})-2-oxidanyl-1-phenyl-ethyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ESK "Create component" 2018-04-11 RCSB 
ESK "Initial release"  2018-05-30 RCSB 
# 
