data_LSK
#

_chem_comp.id                                   LSK
_chem_comp.name                                 "methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H36 N10 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-03
_chem_comp.pdbx_modified_date                   2022-03-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       636.659
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LSK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6SQA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LSK  C20  C1   C  0  1  N  N  S   -0.835  -0.588   7.148   -8.964  -2.628  -0.262  C20  LSK   1  
LSK  C19  C2   C  0  1  N  N  R   -0.414  -0.668   8.621   -7.684  -1.960   0.287  C19  LSK   2  
LSK  C18  C3   C  0  1  N  N  N    0.618   0.342   9.090   -6.458  -2.430  -0.500  C18  LSK   3  
LSK  C17  C4   C  0  1  N  N  N    0.885   2.794   9.276   -4.014  -2.169  -0.427  C17  LSK   4  
LSK  C21  C5   C  0  1  N  N  R   -2.295  -0.116   7.210  -10.037  -1.520  -0.164  C21  LSK   5  
LSK  C16  C6   C  0  1  N  N  N   -2.649   4.289   6.801    0.898  -1.587  -0.206  C16  LSK   6  
LSK  C4   C7   C  0  1  Y  N  N   -8.939   2.067   7.547   10.160   0.862   0.554  C4   LSK   7  
LSK  C14  C8   C  0  1  N  N  N   -3.852   2.656   5.206    3.359  -1.215   0.015  C14  LSK   8  
LSK  C15  C9   C  0  1  N  N  N   -3.862   3.385   6.550    1.988  -0.894   0.614  C15  LSK   9  
LSK  C3   C10  C  0  1  Y  N  N   -8.725   2.605   8.851   11.037   1.953   0.744  C3   LSK  10  
LSK  C8   C11  C  0  1  Y  N  N   -8.128   1.177   5.435    7.991  -0.150   0.768  C8   LSK  11  
LSK  N9   N1   N  0  1  Y  N  N   -6.991  -1.138  11.426  -12.806   3.497   0.534  N9   LSK  12  
LSK  C2   C12  C  0  1  Y  N  N   -9.775   2.834   9.702   12.331   1.865   0.330  C2   LSK  13  
LSK  N7   N2   N  0  1  Y  N  N   -5.077   1.707  10.013   -9.866   2.659  -1.503  N7   LSK  14  
LSK  C5   C13  C  0  1  Y  N  N  -10.273   1.795   7.139   10.636  -0.320  -0.068  C5   LSK  15  
LSK  C10  C14  C  0  1  Y  N  N  -10.491   1.241   5.851    9.761  -1.406  -0.257  C10  LSK  16  
LSK  C13  C15  C  0  1  N  N  N   -5.940   1.645   4.383    5.697  -0.693   0.456  C13  LSK  17  
LSK  C6   C16  C  0  1  Y  N  N  -11.328   2.048   8.049   11.973  -0.391  -0.487  C6   LSK  18  
LSK  O1   O1   O  0  1  N  N  N   -7.437   2.871   9.184   10.589   3.090   1.338  O1   LSK  19  
LSK  C1   C17  C  0  1  Y  N  N  -11.078   2.540   9.307   12.810   0.696  -0.288  C1   LSK  20  
LSK  C11  C18  C  0  1  N  N  N  -12.164   2.720  10.309   14.217   0.624  -0.728  C11  LSK  21  
LSK  C12  C19  C  0  1  N  N  N  -14.457   2.441  10.771   16.407   1.537  -0.995  C12  LSK  22  
LSK  C22  C20  C  0  1  N  N  R   -2.736  -0.678   8.554   -9.278  -0.314   0.433  C22  LSK  23  
LSK  C23  C21  C  0  1  Y  N  N   -4.051   1.358   9.273   -9.189   1.581  -1.231  C23  LSK  24  
LSK  C24  C22  C  0  1  Y  N  N   -5.621   0.497  10.407  -10.900   2.773  -0.635  C24  LSK  25  
LSK  C25  C23  C  0  1  Y  N  N   -6.721   0.171  11.230  -11.936   3.705  -0.449  C25  LSK  26  
LSK  C26  C24  C  0  1  Y  N  N   -6.219  -2.051  10.832  -12.707   2.442   1.322  C26  LSK  27  
LSK  C27  C25  C  0  1  Y  N  N   -4.904  -0.565   9.879  -10.839   1.668   0.230  C27  LSK  28  
LSK  C28  C26  C  0  1  N  N  N   -1.935   4.036   8.132   -0.473  -1.267   0.393  C28  LSK  29  
LSK  C29  C27  C  0  1  N  N  N   -0.501   4.549   8.215   -1.563  -1.960  -0.428  C29  LSK  30  
LSK  C7   C28  C  0  1  Y  N  N   -7.889   1.752   6.661    8.823   0.932   0.967  C7   LSK  31  
LSK  C9   C29  C  0  1  Y  N  N   -9.441   0.944   5.029    8.469  -1.315   0.157  C9   LSK  32  
LSK  N1   N3   N  0  1  N  N  N   -6.925   0.790   4.801    6.657  -0.082   1.179  N1   LSK  33  
LSK  N10  N4   N  0  1  Y  N  N   -5.158  -1.864  10.042  -11.754   1.544   1.186  N10  LSK  34  
LSK  N2   N5   N  0  1  N  N  N   -4.823   1.569   5.138    4.402  -0.551   0.801  N2   LSK  35  
LSK  N3   N6   N  0  1  N  N  N    0.245   3.973   9.328   -2.875  -1.653   0.146  N3   LSK  36  
LSK  N4   N7   N  0  1  N  N  N    0.223   1.716   8.827   -5.246  -1.880   0.111  N4   LSK  37  
LSK  N5   N8   N  0  1  N  N  N    2.111   2.802   9.679   -3.925  -2.931  -1.480  N5   LSK  38  
LSK  N6   N9   N  0  1  Y  N  N   -3.871   0.006   9.168   -9.750   0.935  -0.169  N6   LSK  39  
LSK  N8   N10  N  0  1  N  N  N   -7.501   1.080  11.826  -12.048   4.813  -1.271  N8   LSK  40  
LSK  O2   O2   O  0  1  N  N  N  -13.361   2.399   9.825   15.037   1.677  -0.538  O2   LSK  41  
LSK  O3   O3   O  0  1  N  N  N  -11.988   3.099  11.441   14.637  -0.383  -1.261  O3   LSK  42  
LSK  O4   O4   O  0  1  N  N  N   -6.084   2.473   3.487    6.000  -1.371  -0.506  O4   LSK  43  
LSK  O5   O5   O  0  1  N  N  N   -0.725  -1.852   6.504   -9.328  -3.750   0.544  O5   LSK  44  
LSK  O6   O6   O  0  1  N  N  N   -3.069  -0.705   6.173  -11.096  -1.925   0.706  O6   LSK  45  
LSK  O7   O7   O  0  1  N  N  N   -1.619  -0.520   9.400   -7.893  -0.544   0.092  O7   LSK  46  
LSK  H1   H1   H  0  1  N  N  N   -0.227   0.171   6.634   -8.822  -2.931  -1.299  H1   LSK  47  
LSK  H2   H2   H  0  1  N  N  N   -0.003  -1.673   8.795   -7.563  -2.185   1.347  H2   LSK  48  
LSK  H3   H3   H  0  1  N  N  N    0.762   0.219  10.174   -6.412  -3.519  -0.483  H3   LSK  49  
LSK  H4   H4   H  0  1  N  N  N    1.566   0.143   8.569   -6.535  -2.086  -1.531  H4   LSK  50  
LSK  H5   H5   H  0  1  N  N  N   -2.350   0.983   7.205  -10.425  -1.276  -1.153  H5   LSK  51  
LSK  H6   H6   H  0  1  N  N  N   -1.926   4.129   5.987    0.937  -1.232  -1.236  H6   LSK  52  
LSK  H7   H7   H  0  1  N  N  N   -2.991   5.335   6.787    1.059  -2.665  -0.188  H7   LSK  53  
LSK  H8   H8   H  0  1  N  N  N   -2.847   2.239   5.041    3.520  -2.293   0.034  H8   LSK  54  
LSK  H9   H9   H  0  1  N  N  N   -4.083   3.382   4.412    3.397  -0.859  -1.014  H9   LSK  55  
LSK  H10  H10  H  0  1  N  N  N   -4.768   4.008   6.595    1.826   0.184   0.596  H10  LSK  56  
LSK  H11  H11  H  0  1  N  N  N   -3.897   2.629   7.349    1.949  -1.250   1.644  H11  LSK  57  
LSK  H12  H12  H  0  1  N  N  N   -9.591   3.245  10.684   12.997   2.702   0.477  H12  LSK  58  
LSK  H13  H13  H  0  1  N  N  N  -11.500   1.052   5.516   10.115  -2.310  -0.730  H13  LSK  59  
LSK  H14  H14  H  0  1  N  N  N  -12.347   1.851   7.749   12.347  -1.286  -0.961  H14  LSK  60  
LSK  H15  H15  H  0  1  N  N  N   -7.404   3.223  10.066   10.690   3.096   2.300  H15  LSK  61  
LSK  H16  H16  H  0  1  N  N  N  -15.391   2.159  10.263   16.957   2.453  -0.782  H16  LSK  62  
LSK  H17  H17  H  0  1  N  N  N  -14.259   1.737  11.593   16.879   0.701  -0.478  H17  LSK  63  
LSK  H18  H18  H  0  1  N  N  N  -14.553   3.459  11.176   16.415   1.350  -2.069  H18  LSK  64  
LSK  H19  H19  H  0  1  N  N  N   -2.972  -1.745   8.430   -9.404  -0.284   1.515  H19  LSK  65  
LSK  H20  H20  H  0  1  N  N  N   -3.405   2.076   8.789   -8.314   1.247  -1.767  H20  LSK  66  
LSK  H21  H21  H  0  1  N  N  N   -6.489  -3.081  11.015  -13.435   2.311   2.109  H21  LSK  67  
LSK  H22  H22  H  0  1  N  N  N   -2.517   4.525   8.927   -0.512  -1.622   1.422  H22  LSK  68  
LSK  H23  H23  H  0  1  N  N  N   -1.917   2.950   8.306   -0.634  -0.189   0.374  H23  LSK  69  
LSK  H24  H24  H  0  1  N  N  N    0.017   4.297   7.278   -1.524  -1.604  -1.457  H24  LSK  70  
LSK  H25  H25  H  0  1  N  N  N   -0.526   5.642   8.338   -1.401  -3.037  -0.409  H25  LSK  71  
LSK  H26  H26  H  0  1  N  N  N   -6.872   1.968   6.952    8.446   1.827   1.439  H26  LSK  72  
LSK  H27  H27  H  0  1  N  N  N   -9.631   0.523   4.052    7.802  -2.152   0.010  H27  LSK  73  
LSK  H28  H28  H  0  1  N  N  N   -6.782  -0.187   4.645    6.422   0.404   1.985  H28  LSK  74  
LSK  H29  H29  H  0  1  N  N  N   -4.655   0.739   5.669    4.161  -0.010   1.569  H29  LSK  75  
LSK  H30  H30  H  0  1  N  N  N    0.282   4.489  10.184   -2.941  -1.085   0.930  H30  LSK  76  
LSK  H31  H31  H  0  1  N  N  N   -0.597   1.868   8.275   -5.312  -1.313   0.895  H31  LSK  77  
LSK  H32  H32  H  0  1  N  N  N    2.402   3.712   9.976   -3.056  -3.135  -1.860  H32  LSK  78  
LSK  H33  H33  H  0  1  N  N  N   -8.208   0.615  12.358  -11.407   4.953  -1.985  H33  LSK  79  
LSK  H34  H34  H  0  1  N  N  N   -6.946   1.648  12.434  -12.767   5.448  -1.133  H34  LSK  80  
LSK  H35  H35  H  0  1  N  N  N    0.187  -2.118   6.480  -10.158  -4.171   0.280  H35  LSK  81  
LSK  H36  H36  H  0  1  N  N  N   -3.966  -0.398   6.233  -11.568  -2.715   0.409  H36  LSK  82  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LSK  O4   C13  DOUB  N  N   1  
LSK  C13  N1   SING  N  N   2  
LSK  C13  N2   SING  N  N   3  
LSK  N1   C8   SING  N  N   4  
LSK  C9   C8   DOUB  Y  N   5  
LSK  C9   C10  SING  Y  N   6  
LSK  N2   C14  SING  N  N   7  
LSK  C14  C15  SING  N  N   8  
LSK  C8   C7   SING  Y  N   9  
LSK  C10  C5   DOUB  Y  N  10  
LSK  O6   C21  SING  N  N  11  
LSK  O5   C20  SING  N  N  12  
LSK  C15  C16  SING  N  N  13  
LSK  C7   C4   DOUB  Y  N  14  
LSK  C16  C28  SING  N  N  15  
LSK  C5   C4   SING  Y  N  16  
LSK  C5   C6   SING  Y  N  17  
LSK  C20  C21  SING  N  N  18  
LSK  C20  C19  SING  N  N  19  
LSK  C21  C22  SING  N  N  20  
LSK  C4   C3   SING  Y  N  21  
LSK  C6   C1   DOUB  Y  N  22  
LSK  C28  C29  SING  N  N  23  
LSK  C29  N3   SING  N  N  24  
LSK  C22  N6   SING  N  N  25  
LSK  C22  O7   SING  N  N  26  
LSK  C19  C18  SING  N  N  27  
LSK  C19  O7   SING  N  N  28  
LSK  N4   C18  SING  N  N  29  
LSK  N4   C17  SING  N  N  30  
LSK  C3   O1   SING  N  N  31  
LSK  C3   C2   DOUB  Y  N  32  
LSK  N6   C23  SING  Y  N  33  
LSK  N6   C27  SING  Y  N  34  
LSK  C23  N7   DOUB  Y  N  35  
LSK  C17  N3   SING  N  N  36  
LSK  C17  N5   DOUB  N  N  37  
LSK  C1   C2   SING  Y  N  38  
LSK  C1   C11  SING  N  N  39  
LSK  O2   C11  SING  N  N  40  
LSK  O2   C12  SING  N  N  41  
LSK  C27  N10  DOUB  Y  N  42  
LSK  C27  C24  SING  Y  N  43  
LSK  N7   C24  SING  Y  N  44  
LSK  N10  C26  SING  Y  N  45  
LSK  C11  O3   DOUB  N  N  46  
LSK  C24  C25  DOUB  Y  N  47  
LSK  C26  N9   DOUB  Y  N  48  
LSK  C25  N9   SING  Y  N  49  
LSK  C25  N8   SING  N  N  50  
LSK  C20  H1   SING  N  N  51  
LSK  C19  H2   SING  N  N  52  
LSK  C18  H3   SING  N  N  53  
LSK  C18  H4   SING  N  N  54  
LSK  C21  H5   SING  N  N  55  
LSK  C16  H6   SING  N  N  56  
LSK  C16  H7   SING  N  N  57  
LSK  C14  H8   SING  N  N  58  
LSK  C14  H9   SING  N  N  59  
LSK  C15  H10  SING  N  N  60  
LSK  C15  H11  SING  N  N  61  
LSK  C2   H12  SING  N  N  62  
LSK  C10  H13  SING  N  N  63  
LSK  C6   H14  SING  N  N  64  
LSK  O1   H15  SING  N  N  65  
LSK  C12  H16  SING  N  N  66  
LSK  C12  H17  SING  N  N  67  
LSK  C12  H18  SING  N  N  68  
LSK  C22  H19  SING  N  N  69  
LSK  C23  H20  SING  N  N  70  
LSK  C26  H21  SING  N  N  71  
LSK  C28  H22  SING  N  N  72  
LSK  C28  H23  SING  N  N  73  
LSK  C29  H24  SING  N  N  74  
LSK  C29  H25  SING  N  N  75  
LSK  C7   H26  SING  N  N  76  
LSK  C9   H27  SING  N  N  77  
LSK  N1   H28  SING  N  N  78  
LSK  N2   H29  SING  N  N  79  
LSK  N3   H30  SING  N  N  80  
LSK  N4   H31  SING  N  N  81  
LSK  N5   H32  SING  N  N  82  
LSK  N8   H33  SING  N  N  83  
LSK  N8   H34  SING  N  N  84  
LSK  O5   H35  SING  N  N  85  
LSK  O6   H36  SING  N  N  86  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LSK  InChI             InChI                 1.03   "InChI=1S/C29H36N10O7/c1-45-27(43)16-9-15-5-6-17(11-18(15)19(40)10-16)38-29(44)33-8-4-2-3-7-32-28(31)34-12-20-22(41)23(42)26(46-20)39-14-37-21-24(30)35-13-36-25(21)39/h5-6,9-11,13-14,20,22-23,26,40-42H,2-4,7-8,12H2,1H3,(H2,30,35,36)(H3,31,32,34)(H2,33,38,44)/t20-,22-,23-,26-/m1/s1"  
LSK  InChIKey          InChI                 1.03   UBOFQOGNZXZZPE-HUBRGWSESA-N  
LSK  SMILES_CANONICAL  CACTVS                3.385  "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCCNC(=N)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1"  
LSK  SMILES            CACTVS                3.385  "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCCNC(=N)NC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1"  
LSK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(/NCCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)\NC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"  
LSK  SMILES            "OpenEye OEToolkits"  2.0.7  "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCCNC(=N)NCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          LSK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LSK  "Create component"  2019-09-03  PDBE  
LSK  "Initial release"   2022-03-23  RCSB  
##
