data_MBK
#

_chem_comp.id                                   MBK
_chem_comp.name                                 "~{N}-[6-(4-azanylbutylamino)-1-[(4-bromophenyl)methyl]-2,4-bis(oxidanylidene)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H26 Br N5 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-10
_chem_comp.pdbx_modified_date                   2020-08-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       536.442
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MBK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6T38
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MBK  C1   C1   C   0  1  N  N  N  -12.848  11.019  38.831   0.376  -0.269   0.832  C1   MBK   1  
MBK  C10  C2   C   0  1  Y  N  N   -9.198   5.801  40.112   7.526   0.760  -0.032  C10  MBK   2  
MBK  C11  C3   C   0  1  Y  N  N   -9.382   7.149  40.400   7.087  -0.059  -1.055  C11  MBK   3  
MBK  C12  C4   C   0  1  Y  N  N  -10.660   7.691  40.450   5.776   0.016  -1.487  C12  MBK   4  
MBK  C13  C5   C   0  1  Y  N  N  -11.665  13.960  40.071  -2.775  -0.008   1.320  C13  MBK   5  
MBK  C14  C6   C   0  1  Y  N  N  -12.237  15.073  40.690  -3.475   1.135   1.658  C14  MBK   6  
MBK  C15  C7   C   0  1  Y  N  N  -11.642  15.691  41.797  -4.500   1.584   0.846  C15  MBK   7  
MBK  C16  C8   C   0  1  Y  N  N  -10.449  15.185  42.294  -4.826   0.888  -0.304  C16  MBK   8  
MBK  C17  C9   C   0  1  Y  N  N   -9.863  14.080  41.678  -4.126  -0.256  -0.642  C17  MBK   9  
MBK  C18  C10  C   0  1  Y  N  N  -10.463  13.466  40.581  -3.100  -0.703   0.170  C18  MBK  10  
MBK  C19  C11  C   0  1  N  N  N  -14.050  11.643  40.931  -0.037  -2.695   0.835  C19  MBK  11  
MBK  C2   C12  C   0  1  N  N  N  -12.601   9.698  38.391   1.526   0.399   0.507  C2   MBK  12  
MBK  C20  C13  C   0  1  N  N  N  -15.219  12.643  41.068  -0.293  -3.809  -0.182  C20  MBK  13  
MBK  C21  C14  C   0  1  N  N  N  -14.851  13.748  42.072  -0.346  -5.156   0.540  C21  MBK  14  
MBK  C22  C15  C   0  1  N  N  N  -15.858  13.883  43.205  -0.601  -6.270  -0.477  C22  MBK  15  
MBK  C3   C16  C   0  1  N  N  N  -11.455   9.459  37.596   1.870   1.556   1.228  C3   MBK  16  
MBK  C4   C17  C   0  1  N  N  N  -10.915  11.829  37.764  -0.064   1.320   2.523  C4   MBK  17  
MBK  C5   C18  C   0  1  N  N  N  -12.344  13.458  38.981  -1.653  -0.493   2.201  C5   MBK  18  
MBK  C6   C19  C   0  1  N  N  N  -14.054   7.934  37.576   2.441  -1.504  -0.821  C6   MBK  19  
MBK  C7   C20  C   0  1  Y  N  N  -11.762   6.877  40.224   4.904   0.911  -0.894  C7   MBK  20  
MBK  C8   C21  C   0  1  Y  N  N  -11.590   5.528  39.933   5.343   1.730   0.129  C8   MBK  21  
MBK  C9   C22  C   0  1  Y  N  N  -10.302   4.991  39.880   6.653   1.651   0.564  C9   MBK  22  
MBK  N1   N1   N   0  1  N  N  N  -12.009  12.063  38.532  -0.417   0.210   1.850  N1   MBK  23  
MBK  N2   N2   N   0  1  N  N  N  -10.605  10.534  37.306   1.066   1.985   2.221  N2   MBK  24  
MBK  N3   N3   N   0  1  N  N  N  -13.985  11.185  39.543   0.014  -1.404   0.144  N3   MBK  25  
MBK  N4   N4   N   0  1  N  N  N  -13.528   8.715  38.717   2.356  -0.068  -0.539  N4   MBK  26  
MBK  O1   O1   O   0  1  N  N  N  -10.141  12.733  37.475  -0.777   1.728   3.420  O1   MBK  27  
MBK  O2   O2   O   0  1  N  N  N  -11.137   8.362  37.147   2.890   2.168   0.957  O2   MBK  28  
MBK  O3   O3   O   0  1  N  N  N  -14.324   6.364  40.374   2.767   2.302  -1.090  O3   MBK  29  
MBK  O4   O4   O   0  1  N  N  N  -13.543   8.365  41.551   3.219   0.513  -2.776  O4   MBK  30  
MBK  S1   S1   S   0  1  N  N  N  -13.363   7.545  40.295   3.232   1.007  -1.444  S1   MBK  31  
MBK  BR1  BR1  BR  0  0  N  N  N   -9.604  16.011  43.797  -6.229   1.501  -1.414  BR1  MBK  32  
MBK  N5   N5   N   0  1  N  N  N  -17.024  14.652  42.749  -0.653  -7.564   0.216  N5   MBK  33  
MBK  H1   H1   H   0  1  N  N  N   -8.202   5.386  40.069   8.550   0.701   0.305  H1   MBK  34  
MBK  H2   H2   H   0  1  N  N  N   -8.525   7.779  40.586   7.768  -0.758  -1.518  H2   MBK  35  
MBK  H3   H3   H   0  1  N  N  N  -10.796   8.741  40.664   5.432  -0.623  -2.286  H3   MBK  36  
MBK  H4   H4   H   0  1  N  N  N  -13.165  15.469  40.304  -3.220   1.678   2.556  H4   MBK  37  
MBK  H5   H5   H   0  1  N  N  N  -12.106  16.551  42.258  -5.047   2.477   1.111  H5   MBK  38  
MBK  H6   H6   H   0  1  N  N  N   -8.929  13.694  42.058  -4.379  -0.799  -1.540  H6   MBK  39  
MBK  H7   H7   H   0  1  N  N  N   -9.997  12.606  40.124  -2.553  -1.597  -0.094  H7   MBK  40  
MBK  H8   H8   H   0  1  N  N  N  -14.218  10.784  41.597  -0.843  -2.681   1.569  H8   MBK  41  
MBK  H9   H9   H   0  1  N  N  N  -13.106  12.138  41.202   0.912  -2.874   1.340  H9   MBK  42  
MBK  H10  H10  H   0  1  N  N  N  -15.427  13.096  40.088  -1.242  -3.629  -0.687  H10  MBK  43  
MBK  H11  H11  H   0  1  N  N  N  -16.114  12.111  41.424   0.513  -3.822  -0.917  H11  MBK  44  
MBK  H12  H12  H   0  1  N  N  N  -13.867  13.515  42.504   0.603  -5.336   1.045  H12  MBK  45  
MBK  H13  H13  H   0  1  N  N  N  -14.798  14.706  41.534  -1.151  -5.143   1.274  H13  MBK  46  
MBK  H14  H14  H   0  1  N  N  N  -16.184  12.882  43.525  -1.551  -6.090  -0.982  H14  MBK  47  
MBK  H15  H15  H   0  1  N  N  N  -15.387  14.403  44.052   0.204  -6.283  -1.212  H15  MBK  48  
MBK  H16  H16  H   0  1  N  N  N  -12.149  14.132  38.134  -1.900  -0.295   3.244  H16  MBK  49  
MBK  H17  H17  H   0  1  N  N  N  -13.416  13.476  39.225  -1.515  -1.565   2.057  H17  MBK  50  
MBK  H18  H18  H   0  1  N  N  N  -14.775   7.188  37.943   1.800  -1.746  -1.668  H18  MBK  51  
MBK  H19  H19  H   0  1  N  N  N  -14.555   8.611  36.868   3.472  -1.767  -1.058  H19  MBK  52  
MBK  H20  H20  H   0  1  N  N  N  -13.223   7.422  37.068   2.115  -2.066   0.054  H20  MBK  53  
MBK  H21  H21  H   0  1  N  N  N  -12.448   4.899  39.749   4.661   2.429   0.591  H21  MBK  54  
MBK  H22  H22  H   0  1  N  N  N  -10.164   3.943  39.658   6.996   2.291   1.363  H22  MBK  55  
MBK  H23  H23  H   0  1  N  N  N   -9.774  10.381  36.771   1.302   2.783   2.719  H23  MBK  56  
MBK  H24  H24  H   0  1  N  N  N  -14.533  11.839  39.021  -0.207  -1.350  -0.799  H24  MBK  57  
MBK  H25  H25  H   0  1  N  N  N  -17.681  14.737  43.498  -1.349  -7.556   0.946  H25  MBK  58  
MBK  H26  H26  H   0  1  N  N  N  -16.730  15.563  42.459  -0.821  -8.317  -0.435  H26  MBK  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MBK  O2   C3   DOUB  N  N   1  
MBK  N2   C3   SING  N  N   2  
MBK  N2   C4   SING  N  N   3  
MBK  O1   C4   DOUB  N  N   4  
MBK  C6   N4   SING  N  N   5  
MBK  C3   C2   SING  N  N   6  
MBK  C4   N1   SING  N  N   7  
MBK  C2   N4   SING  N  N   8  
MBK  C2   C1   DOUB  N  N   9  
MBK  N1   C1   SING  N  N  10  
MBK  N1   C5   SING  N  N  11  
MBK  N4   S1   SING  N  N  12  
MBK  C1   N3   SING  N  N  13  
MBK  C5   C13  SING  N  N  14  
MBK  N3   C19  SING  N  N  15  
MBK  C9   C8   DOUB  Y  N  16  
MBK  C9   C10  SING  Y  N  17  
MBK  C8   C7   SING  Y  N  18  
MBK  C13  C18  DOUB  Y  N  19  
MBK  C13  C14  SING  Y  N  20  
MBK  C10  C11  DOUB  Y  N  21  
MBK  C7   S1   SING  N  N  22  
MBK  C7   C12  DOUB  Y  N  23  
MBK  S1   O3   DOUB  N  N  24  
MBK  S1   O4   DOUB  N  N  25  
MBK  C11  C12  SING  Y  N  26  
MBK  C18  C17  SING  Y  N  27  
MBK  C14  C15  DOUB  Y  N  28  
MBK  C19  C20  SING  N  N  29  
MBK  C20  C21  SING  N  N  30  
MBK  C17  C16  DOUB  Y  N  31  
MBK  C15  C16  SING  Y  N  32  
MBK  C21  C22  SING  N  N  33  
MBK  C16  BR1  SING  N  N  34  
MBK  N5   C22  SING  N  N  35  
MBK  C10  H1   SING  N  N  36  
MBK  C11  H2   SING  N  N  37  
MBK  C12  H3   SING  N  N  38  
MBK  C14  H4   SING  N  N  39  
MBK  C15  H5   SING  N  N  40  
MBK  C17  H6   SING  N  N  41  
MBK  C18  H7   SING  N  N  42  
MBK  C19  H8   SING  N  N  43  
MBK  C19  H9   SING  N  N  44  
MBK  C20  H10  SING  N  N  45  
MBK  C20  H11  SING  N  N  46  
MBK  C21  H12  SING  N  N  47  
MBK  C21  H13  SING  N  N  48  
MBK  C22  H14  SING  N  N  49  
MBK  C22  H15  SING  N  N  50  
MBK  C5   H16  SING  N  N  51  
MBK  C5   H17  SING  N  N  52  
MBK  C6   H18  SING  N  N  53  
MBK  C6   H19  SING  N  N  54  
MBK  C6   H20  SING  N  N  55  
MBK  C8   H21  SING  N  N  56  
MBK  C9   H22  SING  N  N  57  
MBK  N2   H23  SING  N  N  58  
MBK  N3   H24  SING  N  N  59  
MBK  N5   H25  SING  N  N  60  
MBK  N5   H26  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MBK  InChI             InChI                 1.03   "InChI=1S/C22H26BrN5O4S/c1-27(33(31,32)18-7-3-2-4-8-18)19-20(25-14-6-5-13-24)28(22(30)26-21(19)29)15-16-9-11-17(23)12-10-16/h2-4,7-12,25H,5-6,13-15,24H2,1H3,(H,26,29,30)"  
MBK  InChIKey          InChI                 1.03   IAVMPVZGAIJJDC-UHFFFAOYSA-N  
MBK  SMILES_CANONICAL  CACTVS                3.385  "CN(C1=C(NCCCCN)N(Cc2ccc(Br)cc2)C(=O)NC1=O)[S](=O)(=O)c3ccccc3"  
MBK  SMILES            CACTVS                3.385  "CN(C1=C(NCCCCN)N(Cc2ccc(Br)cc2)C(=O)NC1=O)[S](=O)(=O)c3ccccc3"  
MBK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(C1=C(N(C(=O)NC1=O)Cc2ccc(cc2)Br)NCCCCN)S(=O)(=O)c3ccccc3"  
MBK  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C1=C(N(C(=O)NC1=O)Cc2ccc(cc2)Br)NCCCCN)S(=O)(=O)c3ccccc3"  
#
_pdbx_chem_comp_identifier.comp_id          MBK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[6-(4-azanylbutylamino)-1-[(4-bromophenyl)methyl]-2,4-bis(oxidanylidene)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MBK  "Create component"  2019-10-10  PDBE  
MBK  "Initial release"   2020-08-19  RCSB  
##
