data_ORK
#

_chem_comp.id                                   ORK
_chem_comp.name                                 "(2~{S})-2-[[(2~{S})-4-methyl-2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]pentanoyl]amino]propanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H34 N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-01
_chem_comp.pdbx_modified_date                   2021-04-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       519.527
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ORK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YI6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ORK  N    N1   N  0  1  N  N  N  35.040  40.924   -4.591    1.571   1.313  -1.296  N    ORK   1  
ORK  C    C1   C  0  1  N  N  N  37.028  43.531   -1.493    1.214  -1.821   1.665  C    ORK   2  
ORK  O    O1   O  0  1  N  N  N  36.153  41.886   -6.746   -0.576   0.195  -2.203  O    ORK   3  
ORK  C1   C2   C  0  1  N  N  N  36.849  42.016   -1.362    1.367  -2.174   0.184  C1   ORK   4  
ORK  C10  C3   C  0  1  Y  N  N  32.206  35.901   -9.081    3.684   2.941   1.542  C10  ORK   5  
ORK  C11  C4   C  0  1  Y  N  N  31.553  37.106   -8.951    3.133   3.550   0.431  C11  ORK   6  
ORK  C12  C5   C  0  1  Y  N  N  32.003  38.049   -8.042    1.769   3.489   0.215  C12  ORK   7  
ORK  C13  C6   C  0  1  N  N  N  34.118  39.550   -9.586   -2.956   0.170   0.340  C13  ORK   8  
ORK  C14  C7   C  0  1  N  N  N  33.299  39.270  -11.791   -4.896  -1.204   0.551  C14  ORK   9  
ORK  C15  C8   C  0  1  Y  N  N  31.926  39.470  -12.367   -6.387  -1.126   0.343  C15  ORK  10  
ORK  C16  C9   C  0  1  Y  N  N  31.484  38.693  -13.425   -7.208  -0.716   1.377  C16  ORK  11  
ORK  C17  C10  C  0  1  Y  N  N  30.234  38.901  -13.981   -8.575  -0.640   1.185  C17  ORK  12  
ORK  C18  C11  C  0  1  Y  N  N  29.406  39.879  -13.476   -9.120  -0.973  -0.041  C18  ORK  13  
ORK  C19  C12  C  0  1  Y  N  N  29.826  40.649  -12.417   -8.299  -1.382  -1.075  C19  ORK  14  
ORK  C2   C13  C  0  1  N  N  N  36.559  41.625    0.084    0.472  -3.369  -0.150  C2   ORK  15  
ORK  C20  C14  C  0  1  Y  N  N  31.079  40.447  -11.863   -6.932  -1.460  -0.882  C20  ORK  16  
ORK  C21  C15  C  0  1  N  N  N  37.431  40.670   -3.968    3.336  -0.308  -0.891  C21  ORK  17  
ORK  C22  C16  C  0  1  N  N  S  38.379  38.410   -4.065    5.432  -1.459  -0.425  C22  ORK  18  
ORK  C23  C17  C  0  1  N  N  N  38.392  37.605   -2.770    6.388  -0.355   0.030  C23  ORK  19  
ORK  C24  C18  C  0  1  N  N  N  38.292  37.444   -5.256    5.800  -2.753   0.255  C24  ORK  20  
ORK  C3   C19  C  0  1  N  N  N  35.769  41.479   -2.306    0.958  -0.974  -0.672  C3   ORK  21  
ORK  C4   C20  C  0  1  N  N  S  36.144  41.472   -3.789    1.966   0.160  -0.475  C4   ORK  22  
ORK  C5   C21  C  0  1  N  N  S  34.538  39.863   -7.195   -0.879   1.434   0.182  C5   ORK  23  
ORK  C6   C22  C  0  1  N  N  N  33.702  38.873   -6.370   -0.530   2.753   0.874  C6   ORK  24  
ORK  C7   C23  C  0  1  Y  N  N  33.126  37.802   -7.264    0.957   2.819   1.110  C7   ORK  25  
ORK  C8   C24  C  0  1  Y  N  N  33.761  36.575   -7.393    1.508   2.209   2.221  C8   ORK  26  
ORK  C9   C25  C  0  1  Y  N  N  33.303  35.633   -8.297    2.872   2.270   2.437  C9   ORK  27  
ORK  N1   N2   N  0  1  N  N  N  33.895  40.232   -8.448   -2.333   1.326   0.039  N1   ORK  28  
ORK  N2   N3   N  0  1  N  N  N  37.266  39.348   -4.068    4.059  -1.094  -0.069  N2   ORK  29  
ORK  O1   O2   O  0  1  N  N  N  33.677  42.342   -6.357   -0.498   2.717  -2.284  O1   ORK  30  
ORK  O2   O3   O  0  1  N  N  N  34.818  38.567   -9.685   -2.312  -0.784   0.730  O2   ORK  31  
ORK  O3   O4   O  0  1  N  N  N  33.405  40.080  -10.593   -4.293   0.071   0.209  O3   ORK  32  
ORK  O4   O5   O  0  1  N  N  N  38.529  41.226   -3.989    3.789   0.023  -1.967  O4   ORK  33  
ORK  O5   O6   O  0  1  N  N  N  39.357  36.978   -5.701    7.019  -3.284   0.073  O5   ORK  34  
ORK  O6   O7   O  0  1  N  N  N  37.150  37.199   -5.710    4.997  -3.312   0.965  O6   ORK  35  
ORK  P    P1   P  0  1  N  N  N  34.819  41.433   -6.197   -0.101   1.388  -1.466  P    ORK  36  
ORK  H1   H1   H  0  1  N  N  N  34.194  41.138   -4.102    2.026   1.288  -2.196  H1   ORK  37  
ORK  H2   H2   H  0  1  N  N  N  37.811  43.870   -0.798    0.166  -1.617   1.883  H2   ORK  38  
ORK  H3   H3   H  0  1  N  N  N  37.321  43.778   -2.524    1.557  -2.656   2.276  H3   ORK  39  
ORK  H4   H4   H  0  1  N  N  N  36.080  44.034   -1.251    1.810  -0.937   1.891  H4   ORK  40  
ORK  H5   H5   H  0  1  N  N  N  37.801  41.545   -1.648    2.407  -2.431  -0.022  H5   ORK  41  
ORK  H6   H6   H  0  1  N  N  N  31.858  35.170   -9.796    4.751   2.984   1.709  H6   ORK  42  
ORK  H7   H7   H  0  1  N  N  N  30.686  37.317   -9.560    3.768   4.075  -0.268  H7   ORK  43  
ORK  H8   H8   H  0  1  N  N  N  31.475  38.985   -7.937    1.338   3.967  -0.653  H8   ORK  44  
ORK  H9   H9   H  0  1  N  N  N  33.447  38.210  -11.539   -4.687  -1.436   1.595  H9   ORK  45  
ORK  H10  H10  H  0  1  N  N  N  34.059  39.583  -12.522   -4.481  -1.985  -0.085  H10  ORK  46  
ORK  H11  H11  H  0  1  N  N  N  32.122  37.916  -13.820   -6.782  -0.456   2.335  H11  ORK  47  
ORK  H12  H12  H  0  1  N  N  N  29.907  38.295  -14.813   -9.217  -0.320   1.992  H12  ORK  48  
ORK  H13  H13  H  0  1  N  N  N  28.430  40.041  -13.910  -10.188  -0.914  -0.191  H13  ORK  49  
ORK  H14  H14  H  0  1  N  N  N  29.177  41.413  -12.016   -8.725  -1.643  -2.032  H14  ORK  50  
ORK  H15  H15  H  0  1  N  N  N  37.349  42.023    0.738   -0.567  -3.113   0.057  H15  ORK  51  
ORK  H16  H16  H  0  1  N  N  N  35.587  42.041    0.388    0.581  -3.621  -1.205  H16  ORK  52  
ORK  H17  H17  H  0  1  N  N  N  36.531  40.529    0.169    0.763  -4.224   0.460  H17  ORK  53  
ORK  H18  H18  H  0  1  N  N  N  31.400  41.056  -11.031   -6.290  -1.776  -1.691  H18  ORK  54  
ORK  H19  H19  H  0  1  N  N  N  39.325  38.966   -4.139    5.507  -1.583  -1.505  H19  ORK  55  
ORK  H20  H20  H  0  1  N  N  N  38.454  38.291   -1.912    6.314  -0.231   1.110  H20  ORK  56  
ORK  H21  H21  H  0  1  N  N  N  37.469  37.011   -2.698    7.410  -0.627  -0.235  H21  ORK  57  
ORK  H22  H22  H  0  1  N  N  N  39.262  36.932   -2.765    6.123   0.581  -0.462  H22  ORK  58  
ORK  H23  H23  H  0  1  N  N  N  34.871  42.103   -2.185    0.940  -1.266  -1.722  H23  ORK  59  
ORK  H24  H24  H  0  1  N  N  N  35.540  40.445   -2.008   -0.034  -0.636  -0.372  H24  ORK  60  
ORK  H25  H25  H  0  1  N  N  N  36.336  42.509   -4.102    1.985   0.451   0.575  H25  ORK  61  
ORK  H26  H26  H  0  1  N  N  N  35.536  39.440   -7.379   -0.510   0.601   0.781  H26  ORK  62  
ORK  H27  H27  H  0  1  N  N  N  32.881  39.414   -5.877   -0.835   3.586   0.242  H27  ORK  63  
ORK  H28  H28  H  0  1  N  N  N  34.342  38.404   -5.608   -1.053   2.811   1.829  H28  ORK  64  
ORK  H29  H29  H  0  1  N  N  N  34.623  36.353   -6.781    0.873   1.684   2.920  H29  ORK  65  
ORK  H30  H30  H  0  1  N  N  N  33.809  34.683   -8.387    3.303   1.793   3.305  H30  ORK  66  
ORK  H31  H31  H  0  1  N  N  N  33.271  41.013   -8.463   -2.847   2.087  -0.273  H31  ORK  67  
ORK  H32  H32  H  0  1  N  N  N  36.337  38.987   -4.148    3.670  -1.417   0.759  H32  ORK  68  
ORK  H33  H33  H  0  1  N  N  N  33.959  43.129   -6.809   -0.155   3.534  -1.896  H33  ORK  69  
ORK  H34  H34  H  0  1  N  N  N  39.170  36.408   -6.438    7.208  -4.115   0.530  H34  ORK  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ORK  C17  C18  DOUB  Y  N   1  
ORK  C17  C16  SING  Y  N   2  
ORK  C18  C19  SING  Y  N   3  
ORK  C16  C15  DOUB  Y  N   4  
ORK  C19  C20  DOUB  Y  N   5  
ORK  C15  C20  SING  Y  N   6  
ORK  C15  C14  SING  N  N   7  
ORK  C14  O3   SING  N  N   8  
ORK  O3   C13  SING  N  N   9  
ORK  O2   C13  DOUB  N  N  10  
ORK  C13  N1   SING  N  N  11  
ORK  C10  C11  DOUB  Y  N  12  
ORK  C10  C9   SING  Y  N  13  
ORK  C11  C12  SING  Y  N  14  
ORK  N1   C5   SING  N  N  15  
ORK  C9   C8   DOUB  Y  N  16  
ORK  C12  C7   DOUB  Y  N  17  
ORK  C8   C7   SING  Y  N  18  
ORK  C7   C6   SING  N  N  19  
ORK  C5   C6   SING  N  N  20  
ORK  C5   P    SING  N  N  21  
ORK  O    P    DOUB  N  N  22  
ORK  O1   P    SING  N  N  23  
ORK  P    N    SING  N  N  24  
ORK  O6   C24  DOUB  N  N  25  
ORK  O5   C24  SING  N  N  26  
ORK  C24  C22  SING  N  N  27  
ORK  N    C4   SING  N  N  28  
ORK  N2   C22  SING  N  N  29  
ORK  N2   C21  SING  N  N  30  
ORK  C22  C23  SING  N  N  31  
ORK  O4   C21  DOUB  N  N  32  
ORK  C21  C4   SING  N  N  33  
ORK  C4   C3   SING  N  N  34  
ORK  C3   C1   SING  N  N  35  
ORK  C    C1   SING  N  N  36  
ORK  C1   C2   SING  N  N  37  
ORK  N    H1   SING  N  N  38  
ORK  C    H2   SING  N  N  39  
ORK  C    H3   SING  N  N  40  
ORK  C    H4   SING  N  N  41  
ORK  C1   H5   SING  N  N  42  
ORK  C10  H6   SING  N  N  43  
ORK  C11  H7   SING  N  N  44  
ORK  C12  H8   SING  N  N  45  
ORK  C14  H9   SING  N  N  46  
ORK  C14  H10  SING  N  N  47  
ORK  C16  H11  SING  N  N  48  
ORK  C17  H12  SING  N  N  49  
ORK  C18  H13  SING  N  N  50  
ORK  C19  H14  SING  N  N  51  
ORK  C2   H15  SING  N  N  52  
ORK  C2   H16  SING  N  N  53  
ORK  C2   H17  SING  N  N  54  
ORK  C20  H18  SING  N  N  55  
ORK  C22  H19  SING  N  N  56  
ORK  C23  H20  SING  N  N  57  
ORK  C23  H21  SING  N  N  58  
ORK  C23  H22  SING  N  N  59  
ORK  C3   H23  SING  N  N  60  
ORK  C3   H24  SING  N  N  61  
ORK  C4   H25  SING  N  N  62  
ORK  C5   H26  SING  N  N  63  
ORK  C6   H27  SING  N  N  64  
ORK  C6   H28  SING  N  N  65  
ORK  C8   H29  SING  N  N  66  
ORK  C9   H30  SING  N  N  67  
ORK  N1   H31  SING  N  N  68  
ORK  N2   H32  SING  N  N  69  
ORK  O1   H33  SING  N  N  70  
ORK  O5   H34  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ORK  InChI             InChI                 1.03   "InChI=1S/C25H34N3O7P/c1-17(2)14-21(23(29)26-18(3)24(30)31)28-36(33,34)22(15-19-10-6-4-7-11-19)27-25(32)35-16-20-12-8-5-9-13-20/h4-13,17-18,21-22H,14-16H2,1-3H3,(H,26,29)(H,27,32)(H,30,31)(H2,28,33,34)/t18-,21-,22-/m0/s1"  
ORK  InChIKey          InChI                 1.03   PREBTZMCCRSQJI-NYVOZVTQSA-N  
ORK  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](N[P](O)(=O)[C@@H](Cc1ccccc1)NC(=O)OCc2ccccc2)C(=O)N[C@@H](C)C(O)=O"  
ORK  SMILES            CACTVS                3.385  "CC(C)C[CH](N[P](O)(=O)[CH](Cc1ccccc1)NC(=O)OCc2ccccc2)C(=O)N[CH](C)C(O)=O"  
ORK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](C(=O)O)NC(=O)[C@H](CC(C)C)NP(=O)([C@@H](Cc1ccccc1)NC(=O)OCc2ccccc2)O"  
ORK  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(C)C(=O)O)NP(=O)(C(Cc1ccccc1)NC(=O)OCc2ccccc2)O"  
#
_pdbx_chem_comp_identifier.comp_id          ORK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-4-methyl-2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]pentanoyl]amino]propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ORK  "Create component"  2020-04-01  PDBE  
ORK  "Initial release"   2021-04-14  RCSB  
##
