data_PLK
#

_chem_comp.id                                   PLK
_chem_comp.name                                 "(3R)-3-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]-5-METHYLHEXANOIC ACID"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H25 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        R-3-amino-5-methylhexanoicacid-pyridoxal-5p-phosphate
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-05-30
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       376.342
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PLK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2YKW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PLK  C11   C11   C  0  1  N  N  N   6.814  118.558  -13.533   0.681  -3.160  -2.066  C11   PLK   1  
PLK  C12   C12   C  0  1  N  N  N   7.484  117.394  -12.735   0.217  -2.984  -0.619  C12   PLK   2  
PLK  C13   C13   C  0  1  N  N  N   8.317  116.449  -13.618  -0.797  -4.076  -0.271  C13   PLK   3  
PLK  C14   C14   C  0  1  N  N  N   6.426  116.641  -11.956   1.421  -3.088   0.319  C14   PLK   4  
PLK  C15   C15   C  0  1  N  N  R   6.973  115.703  -10.832   2.357  -1.901   0.082  C15   PLK   5  
PLK  C16   C16   C  0  1  N  N  N   5.610  115.328  -10.169   3.590  -2.037   0.977  C16   PLK   6  
PLK  C17   C17   C  0  1  N  N  N   4.845  114.240  -10.974   4.568  -0.936   0.656  C17   PLK   7  
PLK  O11   O11   O  0  1  N  N  N   3.597  114.409  -11.213   5.730  -0.856   1.322  O11   PLK   8  
PLK  O12   O12   O  0  1  N  N  N   5.510  113.204  -11.243   4.305  -0.126  -0.201  O12   PLK   9  
PLK  N11   N11   N  0  1  N  N  N   8.058  116.357   -9.937   1.654  -0.652   0.403  N11   PLK  10  
PLK  C21   C21   C  0  1  N  N  N   7.761  116.559   -8.489   1.158   0.002  -0.815  C21   PLK  11  
PLK  C22   C22   C  0  1  Y  N  N   8.693  117.512   -7.644   0.579   1.348  -0.463  C22   PLK  12  
PLK  C23   C23   C  0  1  Y  N  N  10.026  117.836   -7.972   1.375   2.488  -0.462  C23   PLK  13  
PLK  O21   O21   O  0  1  N  N  N  10.606  117.328   -9.096   2.694   2.408  -0.780  O21   PLK  14  
PLK  C24   C24   C  0  1  Y  N  N  10.797  118.676   -7.163   0.804   3.708  -0.132  C24   PLK  15  
PLK  C25   C25   C  0  1  N  N  N  12.235  118.970   -7.538   1.655   4.953  -0.127  C25   PLK  16  
PLK  N21   N21   N  0  1  Y  N  N  10.293  119.219   -6.044  -0.475   3.791   0.176  N21   PLK  17  
PLK  C26   C26   C  0  1  Y  N  N   9.018  118.940   -5.690  -1.257   2.730   0.184  C26   PLK  18  
PLK  C27   C27   C  0  1  Y  N  N   8.201  118.107   -6.473  -0.761   1.480  -0.138  C27   PLK  19  
PLK  C28   C28   C  0  1  N  N  N   6.762  117.855   -5.963  -1.667   0.276  -0.131  C28   PLK  20  
PLK  O22   O22   O  0  1  N  N  N   6.662  116.490   -5.459  -2.990   0.676   0.234  O22   PLK  21  
PLK  P     P     P  0  1  N  N  N   5.194  115.763   -5.420  -4.220  -0.356   0.342  P     PLK  22  
PLK  O1P   O1P   O  0  1  N  N  N   4.181  116.773   -4.775  -5.519   0.414   0.900  O1P   PLK  23  
PLK  O2P   O2P   O  0  1  N  N  N   4.796  115.750   -6.943  -4.540  -0.965  -1.114  O2P   PLK  24  
PLK  O3P   O3P   O  0  1  N  N  N   5.315  114.394   -4.858  -3.862  -1.454   1.268  O3P   PLK  25  
PLK  H111  H111  H  0  0  N  N  N   6.237  119.192  -12.843   1.403  -2.382  -2.314  H111  PLK  26  
PLK  H112  H112  H  0  0  N  N  N   7.592  119.163  -14.022   1.147  -4.139  -2.181  H112  PLK  27  
PLK  H113  H113  H  0  0  N  N  N   6.141  118.140  -14.296  -0.177  -3.086  -2.734  H113  PLK  28  
PLK  H12   H12   H  0  1  N  N  N   8.203  117.844  -12.035  -0.250  -2.005  -0.504  H12   PLK  29  
PLK  H131  H131  H  0  0  N  N  N   8.758  115.657  -12.995  -0.330  -5.054  -0.387  H131  PLK  30  
PLK  H132  H132  H  0  0  N  N  N   7.669  115.996  -14.383  -1.127  -3.950   0.760  H132  PLK  31  
PLK  H133  H133  H  0  0  N  N  N   9.120  117.019  -14.109  -1.655  -4.002  -0.940  H133  PLK  32  
PLK  H141  H141  H  0  0  N  N  N   5.770  117.385  -11.480   1.077  -3.079   1.354  H141  PLK  33  
PLK  H142  H142  H  0  0  N  N  N   5.868  116.016  -12.669   1.956  -4.017   0.122  H142  PLK  34  
PLK  H15   H15   H  0  1  N  N  N   7.559  114.828  -11.148   2.666  -1.886  -0.963  H15   PLK  35  
PLK  H161  H161  H  0  0  N  N  N   5.807  114.942   -9.158   3.290  -1.964   2.022  H161  PLK  36  
PLK  H162  H162  H  0  0  N  N  N   4.984  116.231  -10.119   4.062  -3.004   0.801  H162  PLK  37  
PLK  H11   H11   H  0  1  N  N  N   8.861  115.763   -9.983   0.903  -0.817   1.056  H11   PLK  38  
PLK  HA    HA    H  0  1  N  N  N   3.245  113.630  -11.627   6.325  -0.132   1.081  HA    PLK  39  
PLK  H211  H211  H  0  0  N  N  N   6.749  116.986   -8.436   1.981   0.133  -1.518  H211  PLK  40  
PLK  H212  H212  H  0  0  N  N  N   7.821  115.567   -8.018   0.386  -0.618  -1.271  H212  PLK  41  
PLK  H21   H21   H  0  1  N  N  N  11.499  117.646   -9.163   2.880   2.523  -1.722  H21   PLK  42  
PLK  H251  H251  H  0  0  N  N  N  12.683  119.632   -6.783   1.632   5.413  -1.115  H251  PLK  43  
PLK  H252  H252  H  0  0  N  N  N  12.802  118.028   -7.583   1.266   5.655   0.611  H252  PLK  44  
PLK  H253  H253  H  0  0  N  N  N  12.264  119.463   -8.521   2.682   4.690   0.127  H253  PLK  45  
PLK  H26   H26   H  0  1  N  N  N   8.618  119.368   -4.783  -2.300   2.839   0.443  H26   PLK  46  
PLK  H281  H281  H  0  0  N  N  N   6.529  118.564   -5.155  -1.684  -0.172  -1.125  H281  PLK  47  
PLK  H282  H282  H  0  0  N  N  N   6.049  117.995   -6.789  -1.296  -0.453   0.589  H282  PLK  48  
PLK  H1P   H1P   H  0  1  N  N  N   3.735  116.354   -4.049  -6.300  -0.149   0.991  H1P   PLK  49  
PLK  H2P   H2P   H  0  1  N  N  N   4.702  114.852   -7.239  -4.783  -0.300  -1.773  H2P   PLK  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PLK  C11  C12   SING  N  N   1  
PLK  C12  C13   SING  N  N   2  
PLK  C12  C14   SING  N  N   3  
PLK  C14  C15   SING  N  N   4  
PLK  C15  C16   SING  N  N   5  
PLK  C15  N11   SING  N  N   6  
PLK  C16  C17   SING  N  N   7  
PLK  C17  O11   SING  N  N   8  
PLK  C17  O12   DOUB  N  N   9  
PLK  N11  C21   SING  N  N  10  
PLK  C21  C22   SING  N  N  11  
PLK  C22  C23   SING  Y  N  12  
PLK  C22  C27   DOUB  Y  N  13  
PLK  C23  O21   SING  N  N  14  
PLK  C23  C24   DOUB  Y  N  15  
PLK  C24  C25   SING  N  N  16  
PLK  C24  N21   SING  Y  N  17  
PLK  N21  C26   DOUB  Y  N  18  
PLK  C26  C27   SING  Y  N  19  
PLK  C27  C28   SING  N  N  20  
PLK  C28  O22   SING  N  N  21  
PLK  O22  P     SING  N  N  22  
PLK  P    O1P   SING  N  N  23  
PLK  P    O2P   SING  N  N  24  
PLK  P    O3P   DOUB  N  N  25  
PLK  C11  H111  SING  N  N  26  
PLK  C11  H112  SING  N  N  27  
PLK  C11  H113  SING  N  N  28  
PLK  C12  H12   SING  N  N  29  
PLK  C13  H131  SING  N  N  30  
PLK  C13  H132  SING  N  N  31  
PLK  C13  H133  SING  N  N  32  
PLK  C14  H141  SING  N  N  33  
PLK  C14  H142  SING  N  N  34  
PLK  C15  H15   SING  N  N  35  
PLK  C16  H161  SING  N  N  36  
PLK  C16  H162  SING  N  N  37  
PLK  N11  H11   SING  N  N  38  
PLK  O11  HA    SING  N  N  39  
PLK  C21  H211  SING  N  N  40  
PLK  C21  H212  SING  N  N  41  
PLK  O21  H21   SING  N  N  42  
PLK  C25  H251  SING  N  N  43  
PLK  C25  H252  SING  N  N  44  
PLK  C25  H253  SING  N  N  45  
PLK  C26  H26   SING  N  N  46  
PLK  C28  H281  SING  N  N  47  
PLK  C28  H282  SING  N  N  48  
PLK  O1P  H1P   SING  N  N  49  
PLK  O2P  H2P   SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PLK  SMILES            ACDLabs               12.01  "O=C(O)CC(NCc1c(cnc(c1O)C)COP(=O)(O)O)CC(C)C"  
PLK  SMILES_CANONICAL  CACTVS                3.370  "CC(C)C[C@H](CC(O)=O)NCc1c(O)c(C)ncc1CO[P](O)(O)=O"  
PLK  SMILES            CACTVS                3.370  "CC(C)C[CH](CC(O)=O)NCc1c(O)c(C)ncc1CO[P](O)(O)=O"  
PLK  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H](CC(C)C)CC(=O)O)O"  
PLK  SMILES            "OpenEye OEToolkits"  1.7.2  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CC(C)C)CC(=O)O)O"  
PLK  InChI             InChI                 1.03   "InChI=1S/C15H25N2O7P/c1-9(2)4-12(5-14(18)19)17-7-13-11(8-24-25(21,22)23)6-16-10(3)15(13)20/h6,9,12,17,20H,4-5,7-8H2,1-3H3,(H,18,19)(H2,21,22,23)/t12-/m1/s1"  
PLK  InChIKey          InChI                 1.03   YMKBKDGGJWGJOL-GFCCVEGCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PLK  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R)-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-5-methylhexanoic acid"  
PLK  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(3R)-5-methyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PLK  "Create component"      2011-05-30  EBI   
PLK  "Modify aromatic_flag"  2011-06-04  RCSB  
PLK  "Modify descriptor"     2011-06-04  RCSB  
PLK  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PLK
_pdbx_chem_comp_synonyms.name        R-3-amino-5-methylhexanoicacid-pyridoxal-5p-phosphate
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
