data_TPK
#

_chem_comp.id                                   TPK
_chem_comp.name                                 "(1R)-1-[(2S)-pyrrolidin-2-yl]ethane-1,2-diol"
_chem_comp.type                                 "L-PEPTIDE LINKING"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C6 H13 N O2"
_chem_comp.mon_nstd_parent_comp_id              PRO
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-03-15
_chem_comp.pdbx_modified_date                   2019-10-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       131.173
_chem_comp.one_letter_code                      P
_chem_comp.three_letter_code                    TPK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4AMY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TPK  C    C    C  0  1  N  N  R  36.817  39.066  82.068   0.962  -0.469   0.278  C    TPK   1  
TPK  O    O    O  0  1  N  N  N  35.899  37.978  81.963   0.937  -1.052  -1.027  O    TPK   2  
TPK  C3   C3   C  0  1  N  N  N  36.573  39.557  83.505   1.975   0.678   0.304  C3   TPK   3  
TPK  O4   O4   O  0  1  N  N  N  37.185  40.816  83.749   3.289   0.158   0.097  O4   TPK   4  
TPK  CA   CA   C  0  1  N  N  S  38.252  38.621  81.688  -0.428   0.069   0.623  CA   TPK   5  
TPK  CB   CB   C  0  1  N  N  N  38.255  37.825  80.377  -1.467  -1.072   0.602  CB   TPK   6  
TPK  CG   CG   C  0  1  N  N  N  38.295  36.352  80.704  -2.744  -0.440   0.012  CG   TPK   7  
TPK  CD   CD   C  0  1  N  N  N  38.563  36.248  82.209  -2.369   1.030  -0.275  CD   TPK   8  
TPK  N    N    N  0  1  N  N  N  38.754  37.637  82.655  -0.891   1.016  -0.423  N    TPK   9  
TPK  H1   H1   H  0  1  N  N  N  36.517  39.868  81.378   1.251  -1.225   1.008  H1   TPK  10  
TPK  HO   HO   H  0  1  N  N  N  35.964  37.591  81.098   0.687  -0.435  -1.729  HO   TPK  11  
TPK  H3   H3   H  0  1  N  N  N  35.489  39.651  83.669   1.737   1.390  -0.486  H3   TPK  12  
TPK  H3A  H3A  H  0  1  N  N  N  36.987  38.819  84.208   1.931   1.179   1.271  H3A  TPK  13  
TPK  HO4  HO4  H  0  1  N  N  N  37.012  41.084  84.644   3.984   0.831   0.101  HO4  TPK  14  
TPK  HA   HA   H  0  1  N  N  N  38.918  39.493  81.614  -0.415   0.554   1.599  HA   TPK  15  
TPK  HB2  HB2  H  0  1  N  N  N  37.344  38.052  79.804  -1.121  -1.888  -0.032  HB2  TPK  16  
TPK  HB3  HB3  H  0  1  N  N  N  39.139  38.096  79.782  -1.656  -1.431   1.614  HB3  TPK  17  
TPK  HG2  HG2  H  0  1  N  N  N  37.332  35.881  80.456  -3.025  -0.946  -0.912  HG2  TPK  18  
TPK  HG3  HG3  H  0  1  N  N  N  39.100  35.859  80.140  -3.560  -0.489   0.734  HG3  TPK  19  
TPK  HD2  HD2  H  0  1  N  N  N  37.706  35.790  82.724  -2.841   1.370  -1.197  HD2  TPK  20  
TPK  HD3  HD3  H  0  1  N  N  N  39.467  35.652  82.401  -2.661   1.667   0.560  HD3  TPK  21  
TPK  H    H    H  0  1  N  Y  N  39.731  37.796  82.794  -0.504   1.936  -0.275  H    TPK  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TPK  C   O    SING  N  N   1  
TPK  C   C3   SING  N  N   2  
TPK  C   CA   SING  N  N   3  
TPK  C3  O4   SING  N  N   4  
TPK  CA  CB   SING  N  N   5  
TPK  CA  N    SING  N  N   6  
TPK  CB  CG   SING  N  N   7  
TPK  CG  CD   SING  N  N   8  
TPK  CD  N    SING  N  N   9  
TPK  C   H1   SING  N  N  10  
TPK  O   HO   SING  N  N  11  
TPK  C3  H3   SING  N  N  12  
TPK  C3  H3A  SING  N  N  13  
TPK  O4  HO4  SING  N  N  14  
TPK  CA  HA   SING  N  N  15  
TPK  CB  HB2  SING  N  N  16  
TPK  CB  HB3  SING  N  N  17  
TPK  CG  HG2  SING  N  N  18  
TPK  CG  HG3  SING  N  N  19  
TPK  CD  HD2  SING  N  N  20  
TPK  CD  HD3  SING  N  N  21  
TPK  N   H    SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TPK  SMILES            ACDLabs               12.01  "C(O)(CO)C1CCCN1"  
TPK  InChI             InChI                 1.03   "InChI=1S/C6H13NO2/c8-4-6(9)5-2-1-3-7-5/h5-9H,1-4H2/t5-,6-/m0/s1"  
TPK  InChIKey          InChI                 1.03   ABWTVUOTCCJBBM-WDSKDSINSA-N  
TPK  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H](O)[C@@H]1CCCN1"  
TPK  SMILES            CACTVS                3.385  "OC[CH](O)[CH]1CCCN1"  
TPK  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1C[C@H](NC1)[C@H](CO)O"  
TPK  SMILES            "OpenEye OEToolkits"  1.7.6  "C1CC(NC1)C(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TPK  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R)-1-[(2S)-pyrrolidin-2-yl]ethane-1,2-diol"  
TPK  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(1R)-1-[(2S)-pyrrolidin-2-yl]ethane-1,2-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TPK  "Create component"        2012-03-15  EBI   
TPK  "Modify descriptor"       2014-09-05  RCSB  
TPK  "Other modification"      2018-04-17  RCSB  
TPK  "Modify one letter code"  2019-10-07  PDBE  
##
