data_0VL
#

_chem_comp.id                                   0VL
_chem_comp.name                                 "benzyl {2-[(5S)-5-hydroxy-4-oxo-6-{[2-(pyridin-4-yl)ethyl]carbamoyl}-4,5-dihydropyrimidin-2-yl]propan-2-yl}carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H25 N5 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-17
_chem_comp.pdbx_modified_date                   2022-06-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       451.475
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0VL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7N68
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0VL  C1   C1   C  0  1  N  N  N  8.070  29.194  14.294   0.622   0.511   1.773  C1   0VL   1  
0VL  C2   C2   C  0  1  N  N  N  7.189  30.435  14.684   1.359  -0.776   1.398  C2   0VL   2  
0VL  C3   C3   C  0  1  N  N  N  6.514  31.039  13.463   1.820  -1.489   2.671  C3   0VL   3  
0VL  C4   C4   C  0  1  N  N  N  7.466  32.723  15.833   3.493   0.351   1.061  C4   0VL   4  
0VL  N5   N1   N  0  1  Y  N  N  4.699  31.452   9.567  -8.846   3.007  -0.369  N5   0VL   5  
0VL  C6   C5   C  0  1  Y  N  N  4.020  32.802  17.394   6.683   1.742  -0.095  C6   0VL   6  
0VL  C7   C6   C  0  1  Y  N  N  2.705  32.852  17.014   7.766   0.883  -0.122  C7   0VL   7  
0VL  C8   C7   C  0  1  Y  N  N  1.697  32.472  17.910   8.786   1.085  -1.033  C8   0VL   8  
0VL  C9   C8   C  0  1  Y  N  N  2.029  32.040  19.195   8.723   2.146  -1.917  C9   0VL   9  
0VL  C10  C9   C  0  1  Y  N  N  3.351  31.988  19.580   7.640   3.005  -1.890  C10  0VL  10  
0VL  C14  C10  C  0  1  N  N  N  2.349  29.535  16.061  -3.038  -1.523  -0.534  C14  0VL  11  
0VL  C15  C11  C  0  1  N  N  N  2.316  30.561  13.665  -4.762   0.184  -0.308  C15  0VL  12  
0VL  C18  C12  C  0  1  Y  N  N  2.873  31.664  11.071  -7.329   1.824   0.978  C18  0VL  13  
0VL  C19  C13  C  0  1  Y  N  N  3.760  32.229  10.155  -8.598   2.308   0.721  C19  0VL  14  
0VL  C20  C14  C  0  1  Y  N  N  4.782  30.131   9.864  -7.903   3.271  -1.252  C20  0VL  15  
0VL  C21  C15  C  0  1  Y  N  N  3.901  29.552  10.786  -6.610   2.820  -1.063  C21  0VL  16  
0VL  C22  C16  C  0  1  N  N  N  4.345  29.122  17.519  -1.283  -3.268  -0.767  C22  0VL  17  
0VL  C23  C17  C  0  1  N  N  N  5.656  29.113  17.816   0.092  -3.709  -0.499  C23  0VL  18  
0VL  C11  C18  C  0  1  Y  N  N  4.349  32.367  18.686   6.620   2.803  -0.979  C11  0VL  19  
0VL  C12  C19  C  0  1  N  N  N  6.107  29.957  15.702   0.433  -1.679   0.625  C12  0VL  20  
0VL  C13  C20  C  0  1  N  N  N  3.902  29.563  16.288  -1.665  -2.023  -0.294  C13  0VL  21  
0VL  C16  C21  C  0  1  N  N  N  1.971  29.737  12.394  -4.915   1.573   0.316  C16  0VL  22  
0VL  C17  C22  C  0  1  Y  N  N  2.952  30.332  11.362  -6.312   2.082   0.072  C17  0VL  23  
0VL  C5   C23  C  0  1  N  N  N  5.163  33.234  16.373   5.568   1.518   0.894  C5   0VL  24  
0VL  N1   N2   N  0  1  N  N  N  8.058  31.456  15.338   2.524  -0.449   0.573  N1   0VL  25  
0VL  N2   N3   N  0  1  N  N  N  6.538  29.524  16.929   0.898  -2.877   0.197  N2   0VL  26  
0VL  N3   N4   N  0  1  N  N  N  4.788  29.974  15.395  -0.778  -1.272   0.384  N3   0VL  27  
0VL  N4   N5   N  0  1  N  N  N  1.632  29.997  14.866  -3.403  -0.311  -0.071  N4   0VL  28  
0VL  O1   O1   O  0  1  N  N  N  6.432  32.706  16.812   4.564   0.651   0.303  O1   0VL  29  
0VL  O2   O2   O  0  1  N  N  N  7.855  33.737  15.415   3.400   0.800   2.187  O2   0VL  30  
0VL  O3   O3   O  0  1  N  N  N  1.681  29.125  16.938  -3.835  -2.205  -1.147  O3   0VL  31  
0VL  O4   O4   O  0  1  N  N  N  3.392  28.671  18.497  -2.148  -4.051  -1.460  O4   0VL  32  
0VL  O5   O5   O  0  1  N  N  N  6.021  28.725  18.877   0.493  -4.791  -0.891  O5   0VL  33  
0VL  H1   H1   H  0  1  N  N  N  8.543  28.781  15.197   0.294   1.019   0.867  H1   0VL  34  
0VL  H2   H2   H  0  1  N  N  N  7.435  28.425  13.829  -0.245   0.267   2.388  H2   0VL  35  
0VL  H3   H3   H  0  1  N  N  N  8.848  29.506  13.582   1.292   1.163   2.333  H3   0VL  36  
0VL  H4   H4   H  0  1  N  N  N  5.906  31.903  13.769   0.953  -1.733   3.286  H4   0VL  37  
0VL  H5   H5   H  0  1  N  N  N  7.280  31.366  12.745   2.345  -2.406   2.404  H5   0VL  38  
0VL  H6   H6   H  0  1  N  N  N  5.867  30.285  12.991   2.490  -0.837   3.231  H6   0VL  39  
0VL  H7   H7   H  0  1  N  N  N  2.444  33.185  16.020   7.815   0.054   0.569  H7   0VL  40  
0VL  H8   H8   H  0  1  N  N  N  0.662  32.513  17.606   9.632   0.415  -1.053  H8   0VL  41  
0VL  H9   H9   H  0  1  N  N  N  1.252  31.747  19.886   9.520   2.305  -2.628  H9   0VL  42  
0VL  H10  H10  H  0  1  N  N  N  3.613  31.654  20.573   7.591   3.834  -2.581  H10  0VL  43  
0VL  H11  H11  H  0  1  N  N  N  3.404  30.537  13.826  -5.481  -0.498   0.144  H11  0VL  44  
0VL  H12  H12  H  0  1  N  N  N  1.989  31.601  13.520  -4.944   0.246  -1.381  H12  0VL  45  
0VL  H13  H13  H  0  1  N  N  N  2.125  32.279  11.549  -7.133   1.252   1.873  H13  0VL  46  
0VL  H14  H14  H  0  1  N  N  N  3.698  33.280   9.916  -9.396   2.111   1.422  H14  0VL  47  
0VL  H15  H15  H  0  1  N  N  N  5.534  29.521   9.386  -8.144   3.847  -2.134  H15  0VL  48  
0VL  H16  H16  H  0  1  N  N  N  3.976  28.504  11.034  -5.843   3.040  -1.790  H16  0VL  49  
0VL  H18  H18  H  0  1  N  N  N  5.385  32.326  18.990   5.774   3.474  -0.958  H18  0VL  50  
0VL  H19  H19  H  0  1  N  N  N  0.925  29.890  12.088  -4.732   1.511   1.389  H19  0VL  51  
0VL  H20  H20  H  0  1  N  N  N  2.154  28.664  12.550  -4.195   2.256  -0.136  H20  0VL  52  
0VL  H21  H21  H  0  1  N  N  N  5.219  34.332  16.330   5.968   1.050   1.793  H21  0VL  53  
0VL  H22  H22  H  0  1  N  N  N  4.929  32.839  15.373   5.115   2.475   1.153  H22  0VL  54  
0VL  H23  H23  H  0  1  N  N  N  9.038  31.287  15.443   2.599  -0.808  -0.325  H23  0VL  55  
0VL  H24  H24  H  0  1  N  N  N  0.634  29.930  14.856  -2.767   0.234   0.419  H24  0VL  56  
0VL  H25  H25  H  0  1  N  N  N  2.515  28.736  18.138  -1.772  -4.896  -1.744  H25  0VL  57  
0VL  H17  H17  H  0  1  N  N  N  7.514  29.520  17.149   1.809  -3.143   0.399  H17  0VL  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0VL  N5   C20  DOUB  Y  N   1  
0VL  N5   C19  SING  Y  N   2  
0VL  C20  C21  SING  Y  N   3  
0VL  C19  C18  DOUB  Y  N   4  
0VL  C21  C17  DOUB  Y  N   5  
0VL  C18  C17  SING  Y  N   6  
0VL  C17  C16  SING  N  N   7  
0VL  C16  C15  SING  N  N   8  
0VL  C3   C2   SING  N  N   9  
0VL  C15  N4   SING  N  N  10  
0VL  C1   C2   SING  N  N  11  
0VL  C2   N1   SING  N  N  12  
0VL  C2   C12  SING  N  N  13  
0VL  N4   C14  SING  N  N  14  
0VL  N1   C4   SING  N  N  15  
0VL  N3   C12  DOUB  N  N  16  
0VL  N3   C13  SING  N  N  17  
0VL  O2   C4   DOUB  N  N  18  
0VL  C12  N2   SING  N  N  19  
0VL  C4   O1   SING  N  N  20  
0VL  C14  C13  SING  N  N  21  
0VL  C14  O3   DOUB  N  N  22  
0VL  C13  C22  DOUB  N  N  23  
0VL  C5   O1   SING  N  N  24  
0VL  C5   C6   SING  N  N  25  
0VL  N2   C23  SING  N  N  26  
0VL  C7   C6   DOUB  Y  N  27  
0VL  C7   C8   SING  Y  N  28  
0VL  C6   C11  SING  Y  N  29  
0VL  C22  C23  SING  N  N  30  
0VL  C22  O4   SING  N  N  31  
0VL  C23  O5   DOUB  N  N  32  
0VL  C8   C9   DOUB  Y  N  33  
0VL  C11  C10  DOUB  Y  N  34  
0VL  C9   C10  SING  Y  N  35  
0VL  C1   H1   SING  N  N  36  
0VL  C1   H2   SING  N  N  37  
0VL  C1   H3   SING  N  N  38  
0VL  C3   H4   SING  N  N  39  
0VL  C3   H5   SING  N  N  40  
0VL  C3   H6   SING  N  N  41  
0VL  C7   H7   SING  N  N  42  
0VL  C8   H8   SING  N  N  43  
0VL  C9   H9   SING  N  N  44  
0VL  C10  H10  SING  N  N  45  
0VL  C15  H11  SING  N  N  46  
0VL  C15  H12  SING  N  N  47  
0VL  C18  H13  SING  N  N  48  
0VL  C19  H14  SING  N  N  49  
0VL  C20  H15  SING  N  N  50  
0VL  C21  H16  SING  N  N  51  
0VL  C11  H18  SING  N  N  52  
0VL  C16  H19  SING  N  N  53  
0VL  C16  H20  SING  N  N  54  
0VL  C5   H21  SING  N  N  55  
0VL  C5   H22  SING  N  N  56  
0VL  N1   H23  SING  N  N  57  
0VL  N4   H24  SING  N  N  58  
0VL  O4   H25  SING  N  N  59  
0VL  N2   H17  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0VL  SMILES            ACDLabs               12.01  "OC1=C(N=C(NC1=O)C(C)(C)NC(=O)OCc1ccccc1)C(=O)NCCc1ccncc1"  
0VL  InChI             InChI                 1.03   "InChI=1S/C23H25N5O5/c1-23(2,28-22(32)33-14-16-6-4-3-5-7-16)21-26-17(18(29)20(31)27-21)19(30)25-13-10-15-8-11-24-12-9-15/h3-9,11-12,29H,10,13-14H2,1-2H3,(H,25,30)(H,28,32)(H,26,27,31)"  
0VL  InChIKey          InChI                 1.03   MJJGKQMTUPRYRX-UHFFFAOYSA-N  
0VL  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCc3ccncc3"  
0VL  SMILES            CACTVS                3.385  "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCc3ccncc3"  
0VL  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccncc2)NC(=O)OCc3ccccc3"  
0VL  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccncc2)NC(=O)OCc3ccccc3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0VL  "SYSTEMATIC NAME"  ACDLabs               12.01  "benzyl [2-(5-hydroxy-6-oxo-4-{[2-(pyridin-4-yl)ethyl]carbamoyl}-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate"  
0VL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(phenylmethyl) ~{N}-[2-[5-oxidanyl-6-oxidanylidene-4-(2-pyridin-4-ylethylcarbamoyl)-1~{H}-pyrimidin-2-yl]propan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0VL  "Create component"    2021-06-17  RCSB  
0VL  "Modify value order"  2021-06-18  RCSB  
0VL  "Initial release"     2022-06-08  RCSB  
##
