data_1GL
#

_chem_comp.id                                   1GL
_chem_comp.name                                 "2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose;
2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        BRI
_chem_comp.formula_weight                       162.184
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1GL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1EKH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  1GL  "4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE"  PDB  ?  
2  1GL  2-deoxy-4-O-methyl-alpha-D-fucopyranose                PDB  ?  
3  1GL  "2,6-dideoxy-4-O-methyl-alpha-D-galactose"             PDB  ?  
4  1GL  "2,6-dideoxy-4-O-methyl-D-galactose"                   PDB  ?  
5  1GL  "2,6-dideoxy-4-O-methyl-galactose"                     PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1GL  O1    O1    O  0  1  N  Y  N  11.223  -3.851  -2.823   0.746  -0.584  -2.456  O1    1GL   1  
1GL  C1    C1    C  0  1  N  N  S  12.027  -5.019  -3.145   0.568   0.646  -1.751  C1    1GL   2  
1GL  C2    C2    C  0  1  N  N  N  13.336  -4.479  -3.690   1.490   0.669  -0.530  C2    1GL   3  
1GL  C3    C3    C  0  1  N  N  R  13.123  -3.710  -4.969   1.157  -0.526   0.372  C3    1GL   4  
1GL  O3    O3    O  0  1  N  N  N  14.365  -3.157  -5.408   1.907  -0.434   1.585  O3    1GL   5  
1GL  C4    C4    C  0  1  N  N  R  12.413  -4.597  -6.004  -0.342  -0.498   0.685  C4    1GL   6  
1GL  O4    O4    O  0  1  N  N  N  13.306  -5.711  -6.396  -0.643   0.650   1.479  O4    1GL   7  
1GL  CME   CME   C  0  1  N  N  N  13.803  -5.456  -7.722  -0.511   0.254   2.845  CME   1GL   8  
1GL  C5    C5    C  0  1  N  N  R  11.126  -5.182  -5.382  -1.126  -0.433  -0.627  C5    1GL   9  
1GL  O5    O5    O  0  1  N  N  N  11.469  -5.905  -4.152  -0.790   0.760  -1.332  O5    1GL  10  
1GL  C6    C6    C  0  1  N  N  N  10.426  -6.140  -6.324  -2.626  -0.438  -0.325  C6    1GL  11  
1GL  HO1   HO1   H  0  1  N  Y  N  10.403  -4.189  -2.481   0.152  -0.557  -3.219  HO1   1GL  12  
1GL  H1    H1    H  0  1  N  N  N  12.109  -5.632  -2.217   0.815   1.479  -2.409  H1    1GL  13  
1GL  H2    H21   H  0  1  N  N  N  13.873  -3.866  -2.929   2.528   0.602  -0.856  H2    1GL  14  
1GL  H22   H22   H  0  1  N  N  N  14.089  -5.290  -3.821   1.340   1.596   0.022  H22   1GL  15  
1GL  H3    H3    H  0  1  N  N  N  12.442  -2.841  -4.805   1.407  -1.454  -0.142  H3    1GL  16  
1GL  HO3   HO3   H  0  1  N  Y  N  14.230  -2.672  -6.214   2.842  -0.442   1.336  HO3   1GL  17  
1GL  H4    H4    H  0  1  N  N  N  12.156  -3.985  -6.900  -0.618  -1.400   1.230  H4    1GL  18  
1GL  HM41  HM41  H  0  0  N  N  N  14.475  -6.294  -8.017  -0.733   1.103   3.493  HM41  1GL  19  
1GL  HM42  HM42  H  0  0  N  N  N  12.984  -5.284  -8.459  -1.208  -0.555   3.058  HM42  1GL  20  
1GL  HM43  HM43  H  0  0  N  N  N  14.298  -4.460  -7.808   0.507  -0.085   3.028  HM43  1GL  21  
1GL  H5    H5    H  0  1  N  N  N  10.436  -4.331  -5.169  -0.877  -1.299  -1.241  H5    1GL  22  
1GL  H61   H61   H  0  1  N  N  N   9.496  -6.562  -5.875  -3.185  -0.392  -1.259  H61   1GL  23  
1GL  H62   H62   H  0  1  N  N  N  10.217  -5.659  -7.308  -2.886  -1.352   0.209  H62   1GL  24  
1GL  H63   H63   H  0  1  N  N  N  11.114  -6.948  -6.664  -2.875   0.425   0.290  H63   1GL  25  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1GL  O1   C1    SING  N  N   1  
1GL  O1   HO1   SING  N  N   2  
1GL  C1   C2    SING  N  N   3  
1GL  C1   O5    SING  N  N   4  
1GL  C1   H1    SING  N  N   5  
1GL  C2   C3    SING  N  N   6  
1GL  C2   H2    SING  N  N   7  
1GL  C2   H22   SING  N  N   8  
1GL  C3   O3    SING  N  N   9  
1GL  C3   C4    SING  N  N  10  
1GL  C3   H3    SING  N  N  11  
1GL  O3   HO3   SING  N  N  12  
1GL  C4   O4    SING  N  N  13  
1GL  C4   C5    SING  N  N  14  
1GL  C4   H4    SING  N  N  15  
1GL  O4   CME   SING  N  N  16  
1GL  CME  HM41  SING  N  N  17  
1GL  CME  HM42  SING  N  N  18  
1GL  CME  HM43  SING  N  N  19  
1GL  C5   O5    SING  N  N  20  
1GL  C5   C6    SING  N  N  21  
1GL  C5   H5    SING  N  N  22  
1GL  C6   H61   SING  N  N  23  
1GL  C6   H62   SING  N  N  24  
1GL  C6   H63   SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1GL  SMILES            ACDLabs               10.04  "O(C1C(OC(O)CC1O)C)C"  
1GL  SMILES_CANONICAL  CACTVS                3.341  "CO[C@H]1[C@@H](C)O[C@H](O)C[C@H]1O"  
1GL  SMILES            CACTVS                3.341  "CO[CH]1[CH](C)O[CH](O)C[CH]1O"  
1GL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1[C@@H]([C@@H](C[C@H](O1)O)O)OC"  
1GL  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(CC(O1)O)O)OC"  
1GL  InChI             InChI                 1.03   "InChI=1S/C7H14O4/c1-4-7(10-2)5(8)3-6(9)11-4/h4-9H,3H2,1-2H3/t4-,5-,6+,7+/m1/s1"  
1GL  InChIKey          InChI                 1.03   CDRBUGSWTNDUSM-JWXFUTCRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1GL  "SYSTEMATIC NAME"            ACDLabs               10.04  "2,6-dideoxy-4-O-methyl-alpha-D-lyxo-hexopyranose"  
1GL  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2S,4R,5R,6R)-5-methoxy-6-methyl-oxane-2,4-diol"  
1GL  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-2-deoxy-Fucp4OMe  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
1GL  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
1GL  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
1GL  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
1GL  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1GL  "Create component"          1999-07-08  RCSB  
1GL  "Modify descriptor"         2011-06-04  RCSB  
1GL  "Other modification"        2020-07-03  RCSB  
1GL  "Modify name"               2020-07-17  RCSB  
1GL  "Modify synonyms"           2020-07-17  RCSB  
1GL  "Modify linking type"       2020-07-17  RCSB  
1GL  "Modify atom id"            2020-07-17  RCSB  
1GL  "Modify component atom id"  2020-07-17  RCSB  
1GL  "Modify leaving atom flag"  2020-07-17  RCSB  
##
