data_1LL
#

_chem_comp.id                                   1LL
_chem_comp.name                                 thioditaloside
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H22 O10 S"
_chem_comp.pdbx_synonyms                        "beta-D-talopyranosyl 1-thio-beta-D-talopyranoside"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-03-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       358.362
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1LL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4JCK
_chem_comp.pdbx_subcomponent_list               "SDY TWJ"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
1LL  C1   C6   C  0  1  N  N  S  22.152  39.076  33.540   1.344   0.392  -0.458  SDY  1  C1   polymer  1   1  
1LL  C2   C4   C  0  1  N  N  S  23.082  40.135  32.986   2.529   1.200  -0.994  SDY  1  C2   polymer  1   2  
1LL  O2   O1   O  0  1  N  N  N  22.633  41.429  33.427   2.954   2.139  -0.004  SDY  1  O2   polymer  1   3  
1LL  C3   C5   C  0  1  N  N  S  24.505  39.878  33.469   3.681   0.245  -1.322  SDY  1  C3   polymer  1   4  
1LL  O3   O2   O  0  1  N  N  N  25.367  40.958  33.057   4.816   0.996  -1.754  SDY  1  O3   polymer  1   5  
1LL  C4   C1   C  0  1  N  N  R  24.526  39.742  34.992   4.042  -0.553  -0.065  SDY  1  C4   polymer  1   6  
1LL  O4   O3   O  0  1  N  N  N  24.305  41.027  35.606   4.507   0.340   0.949  SDY  1  O4   polymer  1   7  
1LL  C5   C2   C  0  1  N  N  R  23.456  38.750  35.450   2.798  -1.292   0.435  SDY  1  C5   polymer  1   8  
1LL  O5   O5   O  0  1  N  N  N  22.153  39.138  34.962   1.756  -0.349   0.692  SDY  1  O5   polymer  1   9  
1LL  C6   C3   C  0  1  N  N  N  23.420  38.701  36.975   3.136  -2.043   1.725  SDY  1  C6   polymer  1  10  
1LL  O6   O4   O  0  1  N  N  N  22.327  37.869  37.383   2.011  -2.826   2.129  SDY  1  O6   polymer  1  11  
1LL  SAW  S1   S  0  1  N  N  N  20.517  39.479  32.996  -0.000   1.521   0.000  TWJ  2  S1   polymer  1  12  
1LL  CAL  C7   C  0  1  N  N  S  19.668  37.947  33.289  -1.344   0.392   0.458  TWJ  2  C1   polymer  1  13  
1LL  OAM  O6   O  0  1  N  N  N  20.154  36.940  32.381  -1.756  -0.349  -0.692  TWJ  2  O5   polymer  1  14  
1LL  CAN  C8   C  0  1  N  N  R  19.529  35.677  32.639  -2.798  -1.292  -0.436  TWJ  2  C5   polymer  1  15  
1LL  CAU  C9   C  0  1  N  N  N  20.186  34.655  31.720  -3.135  -2.044  -1.725  TWJ  2  C6   polymer  1  16  
1LL  OAV  O7   O  0  1  N  N  N  21.560  34.502  32.084  -2.010  -2.826  -2.129  TWJ  2  O6   polymer  1  17  
1LL  CAO  C10  C  0  1  N  N  R  18.029  35.784  32.372  -4.042  -0.553   0.064  TWJ  2  C4   polymer  1  18  
1LL  OAT  O8   O  0  1  N  N  N  17.805  36.158  31.017  -4.507   0.340  -0.950  TWJ  2  O4   polymer  1  19  
1LL  CAP  C11  C  0  1  N  N  S  17.430  36.828  33.316  -3.681   0.245   1.322  TWJ  2  C3   polymer  1  20  
1LL  OAS  O9   O  0  1  N  N  N  16.036  36.986  33.052  -4.818   0.995   1.755  TWJ  2  O3   polymer  1  21  
1LL  CAQ  C12  C  0  1  N  N  S  18.154  38.165  33.166  -2.529   1.200   0.994  TWJ  2  C2   polymer  1  22  
1LL  OAR  O10  O  0  1  N  N  N  17.853  38.782  31.903  -2.954   2.139   0.005  TWJ  2  O2   polymer  1  23  
1LL  H11  H11  H  0  1  N  N  N  22.406  38.077  33.155   0.994  -0.296  -1.228  SDY  1  H1   polymer  1  24  
1LL  H6   H6   H  0  1  N  N  N  23.066  40.086  31.887   2.229   1.732  -1.897  SDY  1  H2   polymer  1  25  
1LL  H7   H7   H  0  1  N  N  N  24.859  38.934  33.029   3.373  -0.440  -2.112  SDY  1  H3   polymer  1  26  
1LL  H1   H1   H  0  1  N  N  N  25.511  39.354  35.293   4.824  -1.274  -0.302  SDY  1  H4   polymer  1  27  
1LL  H9   H9   H  0  1  N  N  N  24.320  40.934  36.551   5.294   0.843   0.700  SDY  1  HO4  polymer  1  28  
1LL  H2   H2   H  0  1  N  N  N  23.715  37.751  35.070   2.468  -2.002  -0.323  SDY  1  H5   polymer  1  29  
1LL  H3   H3   H  0  1  N  N  N  24.364  38.284  37.354   3.990  -2.698   1.551  SDY  1  H61  polymer  1  30  
1LL  H4   H4   H  0  1  N  N  N  23.281  39.716  37.375   3.381  -1.327   2.509  SDY  1  H62  polymer  1  31  
1LL  H10  H10  H  0  1  N  N  N  22.294  37.831  38.332   2.154  -3.330   2.941  SDY  1  HO6  polymer  1  32  
1LL  H8   H8   H  0  1  N  N  N  26.251  40.791  33.361   4.657   1.531  -2.544  SDY  1  HO3  polymer  1  33  
1LL  H5   H5   H  0  1  N  N  N  21.746  41.578  33.121   2.273   2.776   0.252  SDY  1  HO2  polymer  1  34  
1LL  H12  H12  H  0  1  N  N  N  19.901  37.663  34.326  -0.994  -0.296   1.228  TWJ  2  H1   polymer  1  35  
1LL  H13  H13  H  0  1  N  N  N  19.688  35.377  33.685  -2.468  -2.002   0.323  TWJ  2  H5   polymer  1  36  
1LL  H14  H14  H  0  1  N  N  N  20.119  35.002  30.678  -3.989  -2.699  -1.551  TWJ  2  H61  polymer  1  37  
1LL  H15  H15  H  0  1  N  N  N  19.671  33.688  31.819  -3.380  -1.327  -2.509  TWJ  2  H62  polymer  1  38  
1LL  H16  H16  H  0  1  N  N  N  21.971  33.865  31.511  -2.152  -3.330  -2.942  TWJ  2  HO6  polymer  1  39  
1LL  H17  H17  H  0  1  N  N  N  17.562  34.810  32.580  -4.824  -1.274   0.303  TWJ  2  H4   polymer  1  40  
1LL  H18  H18  H  0  1  N  N  N  16.871  36.223  30.856  -5.294   0.843  -0.701  TWJ  2  HO4  polymer  1  41  
1LL  H19  H19  H  0  1  N  N  N  17.570  36.476  34.349  -3.374  -0.440   2.112  TWJ  2  H3   polymer  1  42  
1LL  H20  H20  H  0  1  N  N  N  15.673  37.636  33.643  -4.660   1.525   2.548  TWJ  2  HO3  polymer  1  43  
1LL  H21  H21  H  0  1  N  N  N  17.833  38.826  33.984  -2.229   1.731   1.897  TWJ  2  H2   polymer  1  44  
1LL  H22  H22  H  0  1  N  N  N  16.915  38.915  31.831  -2.271   2.773  -0.255  TWJ  2  HO2  polymer  1  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1LL  OAT  CAO  SING  N  N   1  
1LL  CAU  OAV  SING  N  N   2  
1LL  CAU  CAN  SING  N  N   3  
1LL  OAR  CAQ  SING  N  N   4  
1LL  CAO  CAN  SING  N  N   5  
1LL  CAO  CAP  SING  N  N   6  
1LL  OAM  CAN  SING  N  N   7  
1LL  OAM  CAL  SING  N  N   8  
1LL  C2   O2   SING  N  N   9  
1LL  C2   C3   SING  N  N  10  
1LL  C2   C1   SING  N  N  11  
1LL  SAW  CAL  SING  N  N  12  
1LL  SAW  C1   SING  N  N  13  
1LL  OAS  CAP  SING  N  N  14  
1LL  O3   C3   SING  N  N  15  
1LL  CAQ  CAL  SING  N  N  16  
1LL  CAQ  CAP  SING  N  N  17  
1LL  C3   C4   SING  N  N  18  
1LL  C1   O5   SING  N  N  19  
1LL  O5   C5   SING  N  N  20  
1LL  C4   C5   SING  N  N  21  
1LL  C4   O4   SING  N  N  22  
1LL  C5   C6   SING  N  N  23  
1LL  C6   O6   SING  N  N  24  
1LL  C4   H1   SING  N  N  25  
1LL  C5   H2   SING  N  N  26  
1LL  C6   H3   SING  N  N  27  
1LL  C6   H4   SING  N  N  28  
1LL  O2   H5   SING  N  N  29  
1LL  C2   H6   SING  N  N  30  
1LL  C3   H7   SING  N  N  31  
1LL  O3   H8   SING  N  N  32  
1LL  O4   H9   SING  N  N  33  
1LL  O6   H10  SING  N  N  34  
1LL  C1   H11  SING  N  N  35  
1LL  CAL  H12  SING  N  N  36  
1LL  CAN  H13  SING  N  N  37  
1LL  CAU  H14  SING  N  N  38  
1LL  CAU  H15  SING  N  N  39  
1LL  OAV  H16  SING  N  N  40  
1LL  CAO  H17  SING  N  N  41  
1LL  OAT  H18  SING  N  N  42  
1LL  CAP  H19  SING  N  N  43  
1LL  OAS  H20  SING  N  N  44  
1LL  CAQ  H21  SING  N  N  45  
1LL  OAR  H22  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1LL  SMILES            ACDLabs               12.01  "O2C(SC1OC(C(O)C(O)C1O)CO)C(O)C(O)C(O)C2CO"  
1LL  InChI             InChI                 1.03   "InChI=1S/C12H22O10S/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5+,6+,7+,8+,9+,10+,11+,12+/m1/s1"  
1LL  InChIKey          InChI                 1.03   SYKYBMOFPMXDRQ-RUDFYBKXSA-N  
1LL  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@H]1O"  
1LL  SMILES            CACTVS                3.370  "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
1LL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@@H]([C@@H]([C@@H]([C@@H](O1)S[C@H]2[C@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)O"  
1LL  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(C(O1)SC2C(C(C(C(O2)CO)O)O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1LL  "SYSTEMATIC NAME"  ACDLabs               12.01  "beta-D-talopyranosyl 1-thio-beta-D-talopyranoside"  
1LL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R,3R,4S,5S,6S)-2-(hydroxymethyl)-6-[(2S,3S,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1LL  "Create component"    2013-03-19  RCSB  
1LL  "Initial release"     2013-07-31  RCSB  
1LL  "Modify synonyms"     2013-07-31  RCSB  
1LL  "Other modification"  2020-07-03  RCSB  
1LL  "Obsolete component"  2020-07-17  RCSB  
##
