data_1QL
# 
_chem_comp.id                                    1QL 
_chem_comp.name                                  "(2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H19 N3 O7 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Cefoxitin, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-04-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        429.468 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1QL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4KEN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1QL C4  C4  C 0 1 Y N N N N N 28.415 4.346 11.092 5.636  0.876  -0.175 C4  FOX 1  
1QL C2  C2  C 0 1 N N N N N N 26.433 3.849 9.631  3.247  0.296  -0.073 C2  FOX 2  
1QL N2  N2  N 0 1 N N N N N N 27.740 6.938 7.749  -1.424 -1.097 0.157  N2  FOX 3  
1QL C6  C6  C 0 1 Y N N N N N 30.269 5.636 11.205 7.611  -0.029 -0.904 C6  FOX 4  
1QL O6  O6  O 0 1 N N N N N N 28.731 9.350 9.117  -4.106 -2.793 -0.640 O6  FOX 5  
1QL C5  C5  C 0 1 Y N N N N N 29.458 4.893 10.370 6.344  0.433  -1.215 C5  FOX 6  
1QL C8  C8  C 0 1 N N R N N N 26.999 6.014 6.955  -0.444 -0.000 0.170  C8  FOX 7  
1QL C15 C15 C 0 1 N N N N N N 29.335 8.539 8.355  -3.698 -1.946 0.326  C15 FOX 8  
1QL O5  O5  O 0 1 N N N N N N 30.529 8.347 8.487  -4.087 -2.094 1.467  O5  FOX 9  
1QL C13 C13 C 0 1 N N N N N N 28.626 7.763 7.308  -2.779 -0.840 -0.002 C13 FOX 10 
1QL C10 C10 C 0 1 N N N N N N 28.850 7.992 5.905  -3.334 0.277  -0.412 C10 FOX 11 
1QL C11 C11 C 0 1 N N N N N N 29.793 8.866 5.466  -4.837 0.299  -0.520 C11 FOX 12 
1QL C9  C9  C 0 1 N N N N N N 27.928 7.333 4.883  -2.601 1.534  -0.781 C9  FOX 13 
1QL S1  S1  S 0 1 N N N N N N 26.350 6.874 5.563  -0.880 1.128  -1.193 S1  FOX 14 
1QL C14 C14 C 0 1 N N N N N N 25.486 4.180 7.085  1.008  -1.329 -1.338 C14 FOX 15 
1QL O4  O4  O 0 1 N N N N N N 26.284 3.394 6.660  0.015  -1.423 -2.018 O4  FOX 16 
1QL C1  C1  C 0 1 N N S N N N 25.909 5.410 7.802  0.965  -0.557 -0.044 C1  FOX 17 
1QL O   O   O 0 1 N N N N N N 24.806 6.284 8.054  1.304  -1.425 1.039  O   FOX 18 
1QL C   C   C 0 1 N N N N N N 24.248 6.121 9.377  1.293  -0.788 2.319  C   FOX 19 
1QL N   N   N 0 1 N N N N N N 26.641 4.987 9.005  1.923  0.549  -0.103 N   FOX 20 
1QL O1  O1  O 0 1 N N N N N N 25.551 3.075 9.364  3.644  -0.838 0.093  O1  FOX 21 
1QL C3  C3  C 0 1 N N N N N N 27.266 3.455 10.830 4.234  1.422  -0.247 C3  FOX 22 
1QL S   S   S 0 1 Y N N N N N 28.488 4.617 12.781 6.589  0.720  1.296  S   FOX 23 
1QL C7  C7  C 0 1 Y N N N N N 29.900 5.607 12.552 7.934  0.041  0.388  C7  FOX 24 
1QL H1  H1  H 0 1 N N N N N N 31.120 6.195 10.845 8.288  -0.415 -1.652 H1  FOX 25 
1QL H2  H2  H 0 1 N N N N N N 29.348 9.724 9.735  -4.708 -3.502 -0.377 H2  FOX 26 
1QL H3  H3  H 0 1 N N N N N N 29.616 4.759 9.310  5.956  0.433  -2.223 H3  FOX 27 
1QL H4  H4  H 0 1 N N N N N N 27.651 5.219 6.564  -0.493 0.530  1.122  H4  FOX 28 
1QL H5  H5  H 0 1 N N N N N N 30.054 9.787 6.007  -5.123 0.485  -1.555 H5  FOX 29 
1QL H6  H6  H 0 1 N N N N N N 30.635 8.567 4.824  -5.239 -0.662 -0.199 H6  FOX 30 
1QL H7  H7  H 0 1 N N N N N N 28.421 6.428 4.499  -3.083 1.992  -1.645 H7  FOX 31 
1QL H8  H8  H 0 1 N N N N N N 27.761 8.038 4.056  -2.620 2.230  0.058  H8  FOX 32 
1QL H9  H9  H 0 1 N N N N N N 24.432 3.989 6.943  1.927  -1.797 -1.657 H9  FOX 33 
1QL H10 H10 H 0 1 N N N N N N 23.407 6.818 9.509  2.013  0.030  2.324  H10 FOX 34 
1QL H11 H11 H 0 1 N N N N N N 23.891 5.088 9.499  0.296  -0.396 2.521  H11 FOX 35 
1QL H12 H12 H 0 1 N N N N N N 25.022 6.333 10.130 1.561  -1.513 3.088  H12 FOX 36 
1QL H13 H13 H 0 1 N N N N N N 27.340 5.602 9.370  1.606  1.464  -0.163 H13 FOX 37 
1QL H14 H14 H 0 1 N N N N N N 26.616 3.461 11.718 4.088  2.157  0.544  H14 FOX 38 
1QL H15 H15 H 0 1 N N N N N N 27.650 2.438 10.663 4.077  1.895  -1.216 H15 FOX 39 
1QL H16 H16 H 0 1 N N N N N N 30.420 6.128 13.343 8.876  -0.272 0.812  H16 FOX 40 
1QL O2  O2  O 0 1 N N N N N N ?      ?     ?      -5.368 1.353  0.326  O2  FOX 41 
1QL C16 C16 C 0 1 N N N N N N ?      ?     ?      -6.708 1.443  0.422  C16 FOX 42 
1QL H17 H17 H 0 1 N N N N N N 27.053 7.506 8.203  -1.118 -2.012 0.257  H17 FOX 43 
1QL O3  O3  O 0 1 N N N N N N ?      ?     ?      -7.414 0.663  -0.185 O3  FOX 44 
1QL N1  N1  N 0 1 N N N N N N ?      ?     ?      -7.265 2.399  1.191  N1  FOX 45 
1QL H24 H24 H 0 1 N N N N N N ?      ?     ?      -6.701 3.022  1.676  H24 FOX 46 
1QL H25 H25 H 0 1 N N N N N N ?      ?     ?      -8.231 2.464  1.260  H25 FOX 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1QL C9  S1  SING N N 1  
1QL C9  C10 SING N N 2  
1QL C11 C10 SING N N 3  
1QL S1  C8  SING N N 4  
1QL C10 C13 DOUB N N 5  
1QL O4  C14 DOUB N N 6  
1QL C8  N2  SING N N 7  
1QL C8  C1  SING N N 8  
1QL C14 C1  SING N N 9  
1QL C13 N2  SING N N 10 
1QL C13 C15 SING N N 11 
1QL C1  O   SING N N 12 
1QL C1  N   SING N N 13 
1QL O   C   SING N N 14 
1QL C15 O5  DOUB N N 15 
1QL C15 O6  SING N N 16 
1QL N   C2  SING N N 17 
1QL O1  C2  DOUB N N 18 
1QL C2  C3  SING N N 19 
1QL C5  C4  DOUB Y N 20 
1QL C5  C6  SING Y N 21 
1QL C3  C4  SING N N 22 
1QL C4  S   SING Y N 23 
1QL C6  C7  DOUB Y N 24 
1QL C7  S   SING Y N 25 
1QL C6  H1  SING N N 26 
1QL O6  H2  SING N N 27 
1QL C5  H3  SING N N 28 
1QL C8  H4  SING N N 29 
1QL C11 H5  SING N N 30 
1QL C11 H6  SING N N 31 
1QL C9  H7  SING N N 32 
1QL C9  H8  SING N N 33 
1QL C14 H9  SING N N 34 
1QL C   H10 SING N N 35 
1QL C   H11 SING N N 36 
1QL C   H12 SING N N 37 
1QL N   H13 SING N N 38 
1QL C3  H14 SING N N 39 
1QL C3  H15 SING N N 40 
1QL C7  H16 SING N N 41 
1QL C11 O2  SING N N 42 
1QL O2  C16 SING N N 43 
1QL N2  H17 SING N N 44 
1QL C16 O3  DOUB N N 45 
1QL C16 N1  SING N N 46 
1QL N1  H24 SING N N 47 
1QL N1  H25 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1QL SMILES           ACDLabs              12.01 "O=CC(OC)(NC(=O)Cc1sccc1)C2SCC(=C(N2)C(=O)O)COC(=O)N"                                                                                                                         
1QL InChI            InChI                1.03  "InChI=1S/C16H19N3O7S2/c1-25-16(8-20,19-11(21)5-10-3-2-4-27-10)14-18-12(13(22)23)9(7-28-14)6-26-15(17)24/h2-4,8,14,18H,5-7H2,1H3,(H2,17,24)(H,19,21)(H,22,23)/t14-,16+/m1/s1" 
1QL InChIKey         InChI                1.03  IYZWSAWEHPQLHS-ZBFHGGJFSA-N                                                                                                                                                   
1QL SMILES_CANONICAL CACTVS               3.370 "CO[C@@](NC(=O)Cc1sccc1)(C=O)[C@@H]2NC(=C(COC(N)=O)CS2)C(O)=O"                                                                                                                
1QL SMILES           CACTVS               3.370 "CO[C](NC(=O)Cc1sccc1)(C=O)[CH]2NC(=C(COC(N)=O)CS2)C(O)=O"                                                                                                                    
1QL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CO[C@@](C=O)([C@@H]1NC(=C(CS1)COC(=O)N)C(=O)O)NC(=O)Cc2cccs2"                                                                                                                
1QL SMILES           "OpenEye OEToolkits" 1.7.6 "COC(C=O)(C1NC(=C(CS1)COC(=O)N)C(=O)O)NC(=O)Cc2cccs2"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1QL "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid"               
1QL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-5-(aminocarbonyloxymethyl)-2-[(1S)-1-methoxy-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1QL "Create component" 2013-04-26 RCSB 
1QL "Initial release"  2018-09-12 RCSB 
1QL "Modify synonyms"  2021-03-13 RCSB 
1QL "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      1QL 
_pdbx_chem_comp_synonyms.name         "Cefoxitin, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            1QL 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
