data_2GL
#

_chem_comp.id                                   2GL
_chem_comp.name                                 "4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H14 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4-O-ACETYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 4-O-acetyl-2,6-dideoxy-beta-D-galactose;
4-O-acetyl-2,6-dideoxy-D-galactose; 4-O-acetyl-2,6-dideoxy-galactose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       190.194
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2GL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1EKH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  2GL  "4-O-ACETYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE"  PDB  ?  
2  2GL  "4-O-acetyl-2,6-dideoxy-beta-D-galactose"              PDB  ?  
3  2GL  "4-O-acetyl-2,6-dideoxy-D-galactose"                   PDB  ?  
4  2GL  "4-O-acetyl-2,6-dideoxy-galactose"                     PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2GL  O5    O5    O  0  1  N  N  N   -8.083  3.360   0.935   1.797   0.951   0.222  O5    2GL   1  
2GL  C1    C1    C  0  1  N  N  R   -7.694  3.647  -0.417   2.371  -0.355   0.135  C1    2GL   2  
2GL  C2    C2    C  0  1  N  N  N   -8.977  3.938  -1.115   1.260  -1.405   0.212  C2    2GL   3  
2GL  C3    C3    C  0  1  N  N  R   -9.686  5.120  -0.474   0.253  -1.156  -0.914  C3    2GL   4  
2GL  O3    O3    O  0  1  N  N  N  -11.006  5.147  -1.115  -0.826  -2.086  -0.806  O3    2GL   5  
2GL  C4    C4    C  0  1  N  N  R   -9.830  4.916   1.050  -0.288   0.272  -0.794  C4    2GL   6  
2GL  O4    O4    O  0  1  N  N  N  -10.765  3.818   1.366  -1.002   0.416   0.462  O4    2GL   7  
2GL  CME   CME   C  0  1  N  N  N  -12.329  2.580   2.456  -3.122   0.265   1.718  CME   2GL   8  
2GL  CO4   CO4   C  0  1  N  N  N  -11.702  3.938   2.290  -2.315   0.138   0.452  CO4   2GL   9  
2GL  OC4   OC4   O  0  1  N  N  N  -11.866  4.869   3.058  -2.850  -0.214  -0.573  OC4   2GL  10  
2GL  C5    C5    C  0  1  N  N  R   -8.401  4.608   1.539   0.883   1.258  -0.832  C5    2GL  11  
2GL  O1    O1    O  0  1  N  Y  N   -7.138  2.497  -1.066   3.285  -0.547   1.217  O1    2GL  12  
2GL  C6    C6    C  0  1  N  N  N   -8.325  4.501   3.052   0.356   2.683  -0.652  C6    2GL  13  
2GL  HO1   HO1   H  0  1  N  Y  N   -6.893  2.723  -1.956   4.016   0.086   1.231  HO1   2GL  14  
2GL  H1    H1    H  0  1  N  N  N   -7.015  4.511  -0.469   2.902  -0.456  -0.812  H1    2GL  15  
2GL  H2    H21   H  0  1  N  N  N   -8.769  4.171  -2.170   1.692  -2.400   0.101  H2    2GL  16  
2GL  H22   H22   H  0  1  N  N  N   -9.628  3.053  -1.057   0.756  -1.331   1.175  H22   2GL  17  
2GL  H3    H3    H  0  1  N  N  N   -9.132  6.049  -0.676   0.746  -1.280  -1.879  H3    2GL  18  
2GL  HO3   HO3   H  0  1  N  Y  N  -11.515  5.868  -0.763  -0.554  -3.012  -0.867  HO3   2GL  19  
2GL  H4    H4    H  0  1  N  N  N  -10.177  5.853   1.510  -0.965   0.477  -1.623  H4    2GL  20  
2GL  HM41  HM41  H  0  0  N  N  N  -12.946  2.569   3.366  -3.523   1.276   1.794  HM41  2GL  21  
2GL  HM42  HM42  H  0  0  N  N  N  -12.960  2.358   1.583  -3.944  -0.451   1.698  HM42  2GL  22  
2GL  HM43  HM43  H  0  0  N  N  N  -11.539  1.819   2.540  -2.484   0.061   2.578  HM43  2GL  23  
2GL  H5    H5    H  0  1  N  N  N   -7.720  5.398   1.191   1.394   1.178  -1.792  H5    2GL  24  
2GL  H61   H61   H  0  1  N  N  N   -7.290  4.281   3.353  -0.154   2.763   0.308  H61   2GL  25  
2GL  H62   H62   H  0  1  N  N  N   -8.644  5.452   3.503   1.190   3.385  -0.679  H62   2GL  26  
2GL  H63   H63   H  0  1  N  N  N   -8.986  3.692   3.396  -0.342   2.917  -1.456  H63   2GL  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2GL  O5   C1    SING  N  N   1  
2GL  O1   HO1   SING  N  N   2  
2GL  C1   C2    SING  N  N   3  
2GL  C1   O1    SING  N  N   4  
2GL  C1   H1    SING  N  N   5  
2GL  C2   C3    SING  N  N   6  
2GL  C2   H2    SING  N  N   7  
2GL  C2   H22   SING  N  N   8  
2GL  C3   O3    SING  N  N   9  
2GL  C3   C4    SING  N  N  10  
2GL  C3   H3    SING  N  N  11  
2GL  O3   HO3   SING  N  N  12  
2GL  C4   O4    SING  N  N  13  
2GL  C4   C5    SING  N  N  14  
2GL  C4   H4    SING  N  N  15  
2GL  O4   CO4   SING  N  N  16  
2GL  CME  CO4   SING  N  N  17  
2GL  CME  HM41  SING  N  N  18  
2GL  CME  HM42  SING  N  N  19  
2GL  CME  HM43  SING  N  N  20  
2GL  CO4  OC4   DOUB  N  N  21  
2GL  C5   O5    SING  N  N  22  
2GL  C5   C6    SING  N  N  23  
2GL  C5   H5    SING  N  N  24  
2GL  C6   H61   SING  N  N  25  
2GL  C6   H62   SING  N  N  26  
2GL  C6   H63   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2GL  SMILES            ACDLabs               12.01  "O=C(OC1C(OC(O)CC1O)C)C"  
2GL  InChI             InChI                 1.03   "InChI=1S/C8H14O5/c1-4-8(13-5(2)9)6(10)3-7(11)12-4/h4,6-8,10-11H,3H2,1-2H3/t4-,6-,7-,8+/m1/s1"  
2GL  InChIKey          InChI                 1.03   VJCDYXNEQSTOMG-JBBNEOJLSA-N  
2GL  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1O[C@@H](O)C[C@@H](O)[C@H]1OC(C)=O"  
2GL  SMILES            CACTVS                3.385  "C[CH]1O[CH](O)C[CH](O)[CH]1OC(C)=O"  
2GL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[C@@H]1[C@@H]([C@@H](C[C@@H](O1)O)O)OC(=O)C"  
2GL  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1C(C(CC(O1)O)O)OC(=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2GL  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-O-acetyl-2,6-dideoxy-beta-D-lyxo-hexopyranose"  
2GL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3R,4R,6R)-2-methyl-4,6-bis(oxidanyl)oxan-3-yl] ethanoate"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
2GL  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
2GL  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
2GL  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
2GL  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2GL  "Create component"          1999-07-08  PDBJ  
2GL  "Modify descriptor"         2011-06-04  RCSB  
2GL  "Other modification"        2013-07-25  RCSB  
2GL  "Other modification"        2020-07-03  RCSB  
2GL  "Modify name"               2020-07-17  RCSB  
2GL  "Modify synonyms"           2020-07-17  RCSB  
2GL  "Modify linking type"       2020-07-17  RCSB  
2GL  "Modify atom id"            2020-07-17  RCSB  
2GL  "Modify component atom id"  2020-07-17  RCSB  
2GL  "Modify leaving atom flag"  2020-07-17  RCSB  
##
