data_3VL
#

_chem_comp.id                                   3VL
_chem_comp.name                                 "methyl (1R,2R,4S)-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H35 N O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "aclacinomycin T"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-11-14
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       569.600
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3VL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4WXH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3VL  C1   CAZ  C  0  1  N  N  N  25.797  -10.708  20.751   4.011   3.151  -0.293  CAZ  3VL   1  
3VL  C2   CAY  C  0  1  N  N  N  25.626  -12.203  20.977   2.549   3.539  -0.523  CAY  3VL   2  
3VL  C3   CAQ  C  0  1  N  N  R  26.090  -13.110  19.810   1.668   2.293  -0.421  CAQ  3VL   3  
3VL  C4   CAP  C  0  1  N  N  N  25.880  -14.638  19.971   1.767   1.704   0.991  CAP  3VL   4  
3VL  O1   OBA  O  0  1  N  N  N  27.473  -12.766  19.576   2.096   1.321  -1.378  OBA  3VL   5  
3VL  C5   CAR  C  0  1  N  N  R  25.262  -12.695  18.584   0.212   2.669  -0.684  CAR  3VL   6  
3VL  C6   CAX  C  0  1  N  N  N  23.881  -12.618  18.854  -0.161   3.845   0.182  CAX  3VL   7  
3VL  O2   OBC  O  0  1  N  N  N  23.234  -13.572  19.296  -0.614   3.662   1.287  OBC  3VL   8  
3VL  O3   OBB  O  0  1  N  N  N  23.338  -11.402  18.568   0.010   5.095  -0.275  OBB  3VL   9  
3VL  C7   CBD  C  0  1  N  N  N  21.947  -11.386  18.904  -0.371   6.179   0.613  CBD  3VL  10  
3VL  C8   CAM  C  0  1  Y  N  N  25.504  -13.418  17.407  -0.701   1.512  -0.370  CAM  3VL  11  
3VL  C9   CAN  C  0  1  Y  N  N  25.044  -12.951  16.167  -1.991   1.553  -0.897  CAN  3VL  12  
3VL  C10  CAI  C  0  1  Y  N  N  25.155  -13.703  14.991  -2.891   0.529  -0.643  CAI  3VL  13  
3VL  C11  CAJ  C  0  1  N  N  N  24.754  -13.182  13.757  -4.263   0.571  -1.194  CAJ  3VL  14  
3VL  O4   OAT  O  0  1  N  N  N  24.290  -12.042  13.679  -4.549   1.358  -2.075  OAT  3VL  15  
3VL  C12  CAD  C  0  1  Y  N  N  24.872  -13.941  12.599  -5.281  -0.359  -0.661  CAD  3VL  16  
3VL  C13  CAE  C  0  1  Y  N  N  24.456  -13.418  11.377  -6.630  -0.164  -0.934  CAE  3VL  17  
3VL  C14  CAF  C  0  1  Y  N  N  24.553  -14.153  10.198  -7.573  -1.044  -0.427  CAF  3VL  18  
3VL  C15  CAA  C  0  1  Y  N  N  25.084  -15.443  10.244  -7.187  -2.116   0.350  CAA  3VL  19  
3VL  C16  CAB  C  0  1  Y  N  N  25.491  -15.952  11.467  -5.840  -2.330   0.637  CAB  3VL  20  
3VL  O5   OAS  O  0  1  N  N  N  25.999  -17.220  11.549  -5.465  -3.385   1.402  OAS  3VL  21  
3VL  C17  CAC  C  0  1  Y  N  N  25.400  -15.215  12.654  -4.879  -1.451   0.133  CAC  3VL  22  
3VL  C18  CAG  C  0  1  N  N  N  25.812  -15.743  13.884  -3.447  -1.655   0.426  CAG  3VL  23  
3VL  O6   OAU  O  0  1  N  N  N  26.274  -16.888  13.930  -3.058  -2.710   0.887  OAU  3VL  24  
3VL  C19  CAH  C  0  1  Y  N  N  25.687  -14.982  15.054  -2.493  -0.563   0.152  CAH  3VL  25  
3VL  C20  CAK  C  0  1  Y  N  N  26.083  -15.452  16.308  -1.201  -0.596   0.672  CAK  3VL  26  
3VL  O7   OAV  O  0  1  N  N  N  26.612  -16.694  16.397  -0.808  -1.643   1.438  OAV  3VL  27  
3VL  C21  CAL  C  0  1  Y  N  N  25.967  -14.730  17.494  -0.306   0.447   0.405  CAL  3VL  28  
3VL  C22  CAO  C  0  1  N  N  S  26.433  -15.295  18.697   1.077   0.342   0.994  CAO  3VL  29  
3VL  O8   OAW  O  0  1  N  N  N  27.819  -14.878  18.749   1.849  -0.579   0.220  OAW  3VL  30  
3VL  C23  CBE  C  0  1  N  N  R  28.578  -15.593  19.789   2.443  -1.628   0.987  CBE  3VL  31  
3VL  C24  CBJ  C  0  1  N  N  N  29.221  -16.846  19.215   3.017  -2.689   0.044  CBJ  3VL  32  
3VL  O9   OBF  O  0  1  N  N  N  29.603  -14.633  20.164   3.493  -1.092   1.794  OBF  3VL  33  
3VL  C25  CBG  C  0  1  N  N  S  30.492  -14.235  19.099   4.530  -0.447   1.051  CBG  3VL  34  
3VL  C26  CBK  C  0  1  N  N  N  31.460  -13.205  19.672   5.579   0.109   2.015  CBK  3VL  35  
3VL  C27  CBH  C  0  1  N  N  S  31.229  -15.475  18.587   5.187  -1.461   0.110  CBH  3VL  36  
3VL  O10  OBL  O  0  1  N  N  N  32.117  -15.988  19.640   5.791  -2.503   0.878  OBL  3VL  37  
3VL  C28  CBI  C  0  1  N  N  S  30.201  -16.504  18.079   4.119  -2.057  -0.812  CBI  3VL  38  
3VL  N1   NBM  N  0  1  N  N  N  30.803  -17.758  17.560   4.727  -3.086  -1.667  NBM  3VL  39  
3VL  C29  CBO  C  0  1  N  N  N  31.270  -18.714  18.581   3.729  -3.680  -2.566  CBO  3VL  40  
3VL  C30  CBN  C  0  1  N  N  N  31.824  -17.549  16.545   5.859  -2.537  -2.426  CBN  3VL  41  
3VL  H1   H1   H  0  1  N  N  N  25.439  -10.160  21.635   4.649   4.017  -0.466  H1   3VL  42  
3VL  H2   H2   H  0  1  N  N  N  26.861  -10.482  20.585   4.138   2.805   0.733  H2   3VL  43  
3VL  H3   H3   H  0  1  N  N  N  25.215  -10.402  19.869   4.288   2.352  -0.982  H3   3VL  44  
3VL  H4   H4   H  0  1  N  N  N  24.558  -12.399  21.155   2.243   4.263   0.232  H4   3VL  45  
3VL  H5   H5   H  0  1  N  N  N  26.204  -12.479  21.871   2.442   3.980  -1.514  H5   3VL  46  
3VL  H6   H6   H  0  1  N  N  N  24.809  -14.864  20.080   2.815   1.585   1.267  H6   3VL  47  
3VL  H7   H7   H  0  1  N  N  N  26.424  -15.005  20.854   1.274   2.368   1.701  H7   3VL  48  
3VL  H8   H8   H  0  1  N  N  N  27.994  -13.019  20.329   2.986   0.979  -1.221  H8   3VL  49  
3VL  H9   H9   H  0  1  N  N  N  25.583  -11.664  18.374   0.096   2.944  -1.732  H9   3VL  50  
3VL  H10  H10  H  0  1  N  N  N  21.523  -10.399  18.668  -1.431   6.097   0.853  H10  3VL  51  
3VL  H11  H11  H  0  1  N  N  N  21.421  -12.159  18.324   0.214   6.120   1.531  H11  3VL  52  
3VL  H12  H12  H  0  1  N  N  N  21.827  -11.588  19.979  -0.182   7.134   0.123  H12  3VL  53  
3VL  H13  H13  H  0  1  N  N  N  24.587  -11.974  16.117  -2.292   2.390  -1.509  H13  3VL  54  
3VL  H14  H14  H  0  1  N  N  N  24.048  -12.418  11.343  -6.942   0.672  -1.542  H14  3VL  55  
3VL  H15  H15  H  0  1  N  N  N  24.222  -13.731   9.261  -8.620  -0.888  -0.641  H15  3VL  56  
3VL  H16  H16  H  0  1  N  N  N  25.176  -16.033   9.344  -7.932  -2.794   0.739  H16  3VL  57  
3VL  H17  H17  H  0  1  N  N  N  26.227  -17.412  12.451  -5.281  -4.190   0.898  H17  3VL  58  
3VL  H18  H18  H  0  1  N  N  N  26.631  -17.093  15.535  -0.352  -2.341   0.947  H18  3VL  59  
3VL  H19  H19  H  0  1  N  N  N  26.321  -16.389  18.734   1.005  -0.022   2.019  H19  3VL  60  
3VL  H20  H20  H  0  1  N  N  N  27.935  -15.849  20.644   1.687  -2.082   1.628  H20  3VL  61  
3VL  H21  H21  H  0  1  N  N  N  28.433  -17.505  18.822   3.434  -3.509   0.629  H21  3VL  62  
3VL  H22  H22  H  0  1  N  N  N  29.768  -17.366  20.015   2.225  -3.068  -0.602  H22  3VL  63  
3VL  H23  H23  H  0  1  N  N  N  29.925  -13.782  18.272   4.104   0.368   0.467  H23  3VL  64  
3VL  H24  H24  H  0  1  N  N  N  30.897  -12.330  20.029   6.033  -0.711   2.571  H24  3VL  65  
3VL  H25  H25  H  0  1  N  N  N  32.015  -13.651  20.511   6.348   0.636   1.450  H25  3VL  66  
3VL  H26  H26  H  0  1  N  N  N  32.167  -12.891  18.890   5.103   0.800   2.711  H26  3VL  67  
3VL  H27  H27  H  0  1  N  N  N  31.845  -15.168  17.729   5.948  -0.961  -0.489  H27  3VL  68  
3VL  H28  H28  H  0  1  N  N  N  32.722  -15.305  19.905   6.475  -2.196   1.489  H28  3VL  69  
3VL  H29  H29  H  0  1  N  N  N  29.626  -16.032  17.269   3.692  -1.270  -1.433  H29  3VL  70  
3VL  H31  H31  H  0  1  N  N  N  30.484  -18.857  19.337   3.304  -2.904  -3.201  H31  3VL  71  
3VL  H32  H32  H  0  1  N  N  N  31.499  -19.678  18.103   4.205  -4.438  -3.187  H32  3VL  72  
3VL  H33  H33  H  0  1  N  N  N  32.176  -18.320  19.064   2.937  -4.140  -1.975  H33  3VL  73  
3VL  H34  H34  H  0  1  N  N  N  32.218  -18.522  16.214   6.615  -2.166  -1.734  H34  3VL  74  
3VL  H35  H35  H  0  1  N  N  N  31.384  -17.020  15.686   6.290  -3.319  -3.051  H35  3VL  75  
3VL  H36  H36  H  0  1  N  N  N  32.642  -16.947  16.967   5.511  -1.719  -3.057  H36  3VL  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3VL  C14  C15  DOUB  Y  N   1  
3VL  C14  C13  SING  Y  N   2  
3VL  C15  C16  SING  Y  N   3  
3VL  C13  C12  DOUB  Y  N   4  
3VL  C16  O5   SING  N  N   5  
3VL  C16  C17  DOUB  Y  N   6  
3VL  C12  C17  SING  Y  N   7  
3VL  C12  C11  SING  N  N   8  
3VL  C17  C18  SING  N  N   9  
3VL  O4   C11  DOUB  N  N  10  
3VL  C11  C10  SING  N  N  11  
3VL  C18  O6   DOUB  N  N  12  
3VL  C18  C19  SING  N  N  13  
3VL  C10  C19  DOUB  Y  N  14  
3VL  C10  C9   SING  Y  N  15  
3VL  C19  C20  SING  Y  N  16  
3VL  C9   C8   DOUB  Y  N  17  
3VL  C20  O7   SING  N  N  18  
3VL  C20  C21  DOUB  Y  N  19  
3VL  C30  N1   SING  N  N  20  
3VL  C8   C21  SING  Y  N  21  
3VL  C8   C5   SING  N  N  22  
3VL  C21  C22  SING  N  N  23  
3VL  N1   C28  SING  N  N  24  
3VL  N1   C29  SING  N  N  25  
3VL  C28  C27  SING  N  N  26  
3VL  C28  C24  SING  N  N  27  
3VL  O3   C6   SING  N  N  28  
3VL  O3   C7   SING  N  N  29  
3VL  C5   C6   SING  N  N  30  
3VL  C5   C3   SING  N  N  31  
3VL  C27  C25  SING  N  N  32  
3VL  C27  O10  SING  N  N  33  
3VL  C22  O8   SING  N  N  34  
3VL  C22  C4   SING  N  N  35  
3VL  O8   C23  SING  N  N  36  
3VL  C6   O2   DOUB  N  N  37  
3VL  C25  C26  SING  N  N  38  
3VL  C25  O9   SING  N  N  39  
3VL  C24  C23  SING  N  N  40  
3VL  O1   C3   SING  N  N  41  
3VL  C23  O9   SING  N  N  42  
3VL  C3   C4   SING  N  N  43  
3VL  C3   C2   SING  N  N  44  
3VL  C1   C2   SING  N  N  45  
3VL  C1   H1   SING  N  N  46  
3VL  C1   H2   SING  N  N  47  
3VL  C1   H3   SING  N  N  48  
3VL  C2   H4   SING  N  N  49  
3VL  C2   H5   SING  N  N  50  
3VL  C4   H6   SING  N  N  51  
3VL  C4   H7   SING  N  N  52  
3VL  O1   H8   SING  N  N  53  
3VL  C5   H9   SING  N  N  54  
3VL  C7   H10  SING  N  N  55  
3VL  C7   H11  SING  N  N  56  
3VL  C7   H12  SING  N  N  57  
3VL  C9   H13  SING  N  N  58  
3VL  C13  H14  SING  N  N  59  
3VL  C14  H15  SING  N  N  60  
3VL  C15  H16  SING  N  N  61  
3VL  O5   H17  SING  N  N  62  
3VL  O7   H18  SING  N  N  63  
3VL  C22  H19  SING  N  N  64  
3VL  C23  H20  SING  N  N  65  
3VL  C24  H21  SING  N  N  66  
3VL  C24  H22  SING  N  N  67  
3VL  C25  H23  SING  N  N  68  
3VL  C26  H24  SING  N  N  69  
3VL  C26  H25  SING  N  N  70  
3VL  C26  H26  SING  N  N  71  
3VL  C27  H27  SING  N  N  72  
3VL  O10  H28  SING  N  N  73  
3VL  C28  H29  SING  N  N  74  
3VL  C29  H31  SING  N  N  75  
3VL  C29  H32  SING  N  N  76  
3VL  C29  H33  SING  N  N  77  
3VL  C30  H34  SING  N  N  78  
3VL  C30  H35  SING  N  N  79  
3VL  C30  H36  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3VL  SMILES            ACDLabs               12.01  "O=C(OC)C5c3cc2C(=O)c1cccc(O)c1C(=O)c2c(O)c3C(OC4OC(C(O)C(N(C)C)C4)C)CC5(O)CC"  
3VL  InChI             InChI                 1.03   "InChI=1S/C30H35NO10/c1-6-30(38)12-19(41-20-11-17(31(3)4)25(33)13(2)40-20)22-15(24(30)29(37)39-5)10-16-23(28(22)36)27(35)21-14(26(16)34)8-7-9-18(21)32/h7-10,13,17,19-20,24-25,32-33,36,38H,6,11-12H2,1-5H3/t13-,17-,19-,20-,24-,25+,30+/m0/s1"  
3VL  InChIKey          InChI                 1.03   LJZPVWKMAYDYAS-QKKPTTNWSA-N  
3VL  SMILES_CANONICAL  CACTVS                3.385  "CC[C@@]1(O)C[C@H](O[C@H]2C[C@@H]([C@H](O)[C@H](C)O2)N(C)C)c3c(O)c4C(=O)c5c(O)cccc5C(=O)c4cc3[C@H]1C(=O)OC"  
3VL  SMILES            CACTVS                3.385  "CC[C]1(O)C[CH](O[CH]2C[CH]([CH](O)[CH](C)O2)N(C)C)c3c(O)c4C(=O)c5c(O)cccc5C(=O)c4cc3[CH]1C(=O)OC"  
3VL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC[C@]1(C[C@@H](c2c(cc3c(c2O)C(=O)c4c(cccc4O)C3=O)[C@H]1C(=O)OC)O[C@H]5C[C@@H]([C@@H]([C@@H](O5)C)O)N(C)C)O"  
3VL  SMILES            "OpenEye OEToolkits"  1.7.6  "CCC1(CC(c2c(cc3c(c2O)C(=O)c4c(cccc4O)C3=O)C1C(=O)OC)OC5CC(C(C(O5)C)O)N(C)C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3VL  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl (1R,2R,4S)-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate"  
3VL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "methyl (1R,2R,4S)-4-[(2R,4S,5S,6S)-4-(dimethylamino)-6-methyl-5-oxidanyl-oxan-2-yl]oxy-2-ethyl-2,5,7-tris(oxidanyl)-6,11-bis(oxidanylidene)-3,4-dihydro-1H-tetracene-1-carboxylate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3VL  "Create component"  2014-11-14  EBI   
3VL  "Modify synonyms"   2015-07-16  EBI   
3VL  "Initial release"   2015-07-29  RCSB  
3VL  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3VL
_pdbx_chem_comp_synonyms.name        "aclacinomycin T"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
