data_5AL
#

_chem_comp.id                                   5AL
_chem_comp.name                                 "5'-O-[(R)-{[(2S)-2-aminopropanoyl]oxy}(hydroxy)phosphoryl]adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H19 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Alanyl Adenylate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-06-25
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       418.299
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5AL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3HXY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5AL  C       C     C  0  1  N  N  N  12.336   4.408  -3.702   5.637  -0.783  -0.244  C     5AL   1  
5AL  N       N     N  0  1  N  N  N  10.404   3.191  -4.788   7.895  -1.448  -0.849  N     5AL   2  
5AL  O       O     O  0  1  N  N  N  11.805   4.479  -2.608   6.102  -0.386   0.798  O     5AL   3  
5AL  P       P     P  0  1  N  N  N  14.731   5.113  -2.626   3.546   0.433   0.464  P     5AL   4  
5AL  N1      N1    N  0  1  Y  N  N  16.344  10.511   4.387  -6.809  -1.482  -0.551  N1    5AL   5  
5AL  C2      C2    C  0  1  Y  N  N  16.103  11.438   3.448  -6.448  -0.361  -1.147  C2    5AL   6  
5AL  N3      N3    N  0  1  Y  N  N  15.864  11.126   2.167  -5.231   0.130  -1.052  N3    5AL   7  
5AL  C4      C4    C  0  1  Y  N  N  15.859   9.834   1.763  -4.302  -0.497  -0.338  C4    5AL   8  
5AL  C5      C5    C  0  1  Y  N  N  16.113   8.808   2.723  -4.636  -1.695   0.317  C5    5AL   9  
5AL  C6      C6    C  0  1  Y  N  N  16.359   9.196   4.086  -5.949  -2.178   0.185  C6    5AL  10  
5AL  N6      N6    N  0  1  N  N  N  16.606   8.277   5.047  -6.337  -3.352   0.807  N6    5AL  11  
5AL  N7      N7    N  0  1  Y  N  N  16.044   7.640   2.061  -3.524  -2.121   0.963  N7    5AL  12  
5AL  C8      C8    C  0  1  Y  N  N  15.768   7.917   0.765  -2.553  -1.281   0.752  C8    5AL  13  
5AL  N9      N9    N  0  1  Y  N  N  15.657   9.243   0.583  -2.982  -0.262  -0.045  N9    5AL  14  
5AL  CA      CA    C  0  1  N  N  S  11.523   4.119  -4.911   6.473  -1.632  -1.167  CA    5AL  15  
5AL  CB      CB    C  0  1  N  N  N  11.396   5.231  -5.955   6.096  -3.104  -0.986  CB    5AL  16  
5AL  "C1'"   C1*   C  0  1  N  N  R  15.352   9.967  -0.689  -2.181   0.875  -0.505  C1*   5AL  17  
5AL  O1A     O1A   O  0  1  N  N  N  14.652   4.117  -1.501   3.331  -0.384   1.834  O1A   5AL  18  
5AL  "C2'"   C2*   C  0  1  N  N  R  16.463   9.901  -1.687  -2.334   2.077   0.463  C2*   5AL  19  
5AL  "O2'"   O2*   O  0  1  N  N  N  16.990  11.151  -2.188  -3.474   2.866   0.119  O2*   5AL  20  
5AL  O2A     O2A   O  0  1  N  N  N  16.055   5.412  -3.282   4.298   1.677   0.744  O2A   5AL  21  
5AL  "C3'"   C3*   C  0  1  N  N  S  16.128   8.865  -2.661  -1.023   2.861   0.215  C3*   5AL  22  
5AL  "O3'"   O3*   O  0  1  N  N  N  16.748   8.830  -3.964  -1.247   3.935  -0.702  O3*   5AL  23  
5AL  O3A     O3A   O  0  1  N  N  N  13.773   4.612  -3.824   4.375  -0.472  -0.578  O3A   5AL  24  
5AL  "C4'"   C4*   C  0  1  N  N  R  14.665   8.752  -2.559  -0.069   1.818  -0.400  C4*   5AL  25  
5AL  "O4'"   O4*   O  0  1  N  N  N  14.212   9.391  -1.354  -0.773   0.564  -0.441  O4*   5AL  26  
5AL  "C5'"   C5*   C  0  1  N  N  N  13.910   7.564  -3.085   1.185   1.685   0.467  C5*   5AL  27  
5AL  "O5'"   O5*   O  0  1  N  N  N  14.072   6.501  -2.154   2.113   0.804  -0.170  O5*   5AL  28  
5AL  HN      HN    H  0  1  N  N  N   9.952   3.094  -5.675   8.090  -1.717   0.104  HN    5AL  29  
5AL  H2      H2    H  0  1  N  N  N  16.102  12.479   3.736  -7.179   0.174  -1.736  H2    5AL  30  
5AL  HN6     HN6   H  0  1  N  N  N  16.756   8.740   5.921  -5.700  -3.851   1.341  HN6   5AL  31  
5AL  HN6A    HN6A  H  0  0  N  N  N  15.823   7.660   5.127  -7.246  -3.676   0.708  HN6A  5AL  32  
5AL  H8      H8    H  0  1  N  N  N  15.653   7.176  -0.013  -1.553  -1.378   1.150  H8    5AL  33  
5AL  HB      HB    H  0  1  N  N  N  10.771   4.881  -6.790   5.041  -3.241  -1.222  HB    5AL  34  
5AL  HBA     HBA   H  0  1  N  N  N  10.931   6.115  -5.494   6.701  -3.719  -1.653  HBA   5AL  35  
5AL  HBB     HBB   H  0  1  N  N  N  12.395   5.496  -6.331   6.280  -3.401   0.047  HBB   5AL  36  
5AL  "H1'"   H1*   H  0  1  N  N  N  15.178  11.007  -0.377  -2.466   1.160  -1.518  H1*   5AL  37  
5AL  HO1A    HO1A  H  0  0  N  N  N  15.518   3.768  -1.325   2.844  -1.213   1.725  HO1A  5AL  38  
5AL  "H2'"   H2*   H  0  1  N  N  N  17.383   9.599  -1.164  -2.395   1.738   1.497  H2*   5AL  39  
5AL  "HO2'"  HO2*  H  0  0  N  N  N  17.686  10.975  -2.810  -3.612   3.630   0.696  HO2*  5AL  40  
5AL  "H3'"   H3*   H  0  1  N  N  N  16.645   7.929  -2.404  -0.620   3.239   1.155  H3*   5AL  41  
5AL  "HO3'"  HO3*  H  0  0  N  N  N  16.409   8.092  -4.457  -1.885   4.591  -0.390  HO3*  5AL  42  
5AL  "H4'"   H4*   H  0  1  N  N  N  14.297   9.312  -3.431   0.207   2.119  -1.411  H4*   5AL  43  
5AL  "H5'"   H5*   H  0  1  N  N  N  12.844   7.812  -3.193   1.644   2.665   0.596  H5*   5AL  44  
5AL  "H5'A"  H5*A  H  0  0  N  N  N  14.308   7.269  -4.067   0.911   1.281   1.442  H5*A  5AL  45  
5AL  H18     H18   H  0  1  N  N  N  10.742   2.299  -4.487   8.479  -1.957  -1.495  H18   5AL  46  
5AL  H19     H19   H  0  1  N  N  N  12.233   3.450  -5.418   6.290  -1.335  -2.200  H19   5AL  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5AL  C      O       DOUB  N  N   1  
5AL  N      HN      SING  N  N   2  
5AL  P      "O5'"   SING  N  N   3  
5AL  P      O1A     SING  N  N   4  
5AL  C2     N1      DOUB  Y  N   5  
5AL  C2     H2      SING  N  N   6  
5AL  N3     C2      SING  Y  N   7  
5AL  C4     N3      DOUB  Y  N   8  
5AL  C4     C5      SING  Y  N   9  
5AL  C5     C6      DOUB  Y  N  10  
5AL  C6     N1      SING  Y  N  11  
5AL  C6     N6      SING  N  N  12  
5AL  N6     HN6     SING  N  N  13  
5AL  N6     HN6A    SING  N  N  14  
5AL  N7     C5      SING  Y  N  15  
5AL  C8     N7      DOUB  Y  N  16  
5AL  C8     H8      SING  N  N  17  
5AL  N9     C4      SING  Y  N  18  
5AL  N9     C8      SING  Y  N  19  
5AL  CA     C       SING  N  N  20  
5AL  CA     N       SING  N  N  21  
5AL  CB     CA      SING  N  N  22  
5AL  CB     HB      SING  N  N  23  
5AL  CB     HBA     SING  N  N  24  
5AL  CB     HBB     SING  N  N  25  
5AL  "C1'"  N9      SING  N  N  26  
5AL  "C1'"  "H1'"   SING  N  N  27  
5AL  O1A    HO1A    SING  N  N  28  
5AL  "C2'"  "C1'"   SING  N  N  29  
5AL  "C2'"  "H2'"   SING  N  N  30  
5AL  "O2'"  "C2'"   SING  N  N  31  
5AL  "O2'"  "HO2'"  SING  N  N  32  
5AL  O2A    P       DOUB  N  N  33  
5AL  "C3'"  "C2'"   SING  N  N  34  
5AL  "C3'"  "C4'"   SING  N  N  35  
5AL  "C3'"  "H3'"   SING  N  N  36  
5AL  "O3'"  "C3'"   SING  N  N  37  
5AL  "O3'"  "HO3'"  SING  N  N  38  
5AL  O3A    C       SING  N  N  39  
5AL  O3A    P       SING  N  N  40  
5AL  "C4'"  "O4'"   SING  N  N  41  
5AL  "C4'"  "H4'"   SING  N  N  42  
5AL  "O4'"  "C1'"   SING  N  N  43  
5AL  "C5'"  "C4'"   SING  N  N  44  
5AL  "C5'"  "O5'"   SING  N  N  45  
5AL  "C5'"  "H5'"   SING  N  N  46  
5AL  "C5'"  "H5'A"  SING  N  N  47  
5AL  N      H18     SING  N  N  48  
5AL  CA     H19     SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5AL  SMILES            ACDLabs               11.02  "O=P(OC(=O)C(N)C)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"  
5AL  SMILES_CANONICAL  CACTVS                3.352  "C[C@H](N)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
5AL  SMILES            CACTVS                3.352  "C[CH](N)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
5AL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C[C@@H](C(=O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N"  
5AL  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N"  
5AL  InChI             InChI                 1.03   "InChI=1S/C13H19N6O8P/c1-5(14)13(22)27-28(23,24)25-2-6-8(20)9(21)12(26-6)19-4-18-7-10(15)16-3-17-11(7)19/h3-6,8-9,12,20-21H,2,14H2,1H3,(H,23,24)(H2,15,16,17)/t5-,6+,8+,9+,12+/m0/s1"  
5AL  InChIKey          InChI                 1.03   ISYFCRWDMNBLTM-MACXSXHHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5AL  "SYSTEMATIC NAME"  ACDLabs               11.02  "5'-O-[(R)-{[(2S)-2-aminopropanoyl]oxy}(hydroxy)phosphoryl]adenosine"  
5AL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-2-azanylpropanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5AL  "Create component"      2009-06-25  RCSB  
5AL  "Modify aromatic_flag"  2011-06-04  RCSB  
5AL  "Modify descriptor"     2011-06-04  RCSB  
5AL  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5AL
_pdbx_chem_comp_synonyms.name        "Alanyl Adenylate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
