data_A1IOL
# 
_chem_comp.id                                    A1IOL 
_chem_comp.name                                  "~{N}-[(5~{S})-5-azanyl-6-[(3~{S},4~{S},6~{R})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-6-oxidanylidene-hexyl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H35 N7 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-09-13 
_chem_comp.pdbx_modified_date                    2024-10-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        493.557 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IOL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GS4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IOL N1  N1  N 0 1 Y N N N N N 85.271 -31.965 18.701 2.529  -0.120 -1.087 N1  A1IOL 1  
A1IOL N3  N2  N 0 1 N N N N N N 84.028 -30.054 16.062 0.297  2.541  -1.684 N3  A1IOL 2  
A1IOL C4  C1  C 0 1 Y N N N N N 84.395 -31.028 16.937 1.042  1.376  -1.765 C4  A1IOL 3  
A1IOL C5  C2  C 0 1 N N N N N N 83.347 -30.389 14.815 -0.653 2.878  -2.747 C5  A1IOL 4  
A1IOL C6  C3  C 0 1 N N S N N N 85.931 -32.263 19.951 3.546  -0.840 -0.317 C6  A1IOL 5  
A1IOL C7  C4  C 0 1 N N S N N N 85.160 -31.946 21.249 3.557  -2.293 -0.727 C7  A1IOL 6  
A1IOL C8  C5  C 0 1 N N N N N N 85.885 -32.854 22.278 2.208  -2.795 -1.271 C8  A1IOL 7  
A1IOL C10 C6  C 0 1 N N N N N N 88.493 -32.941 21.833 1.275  -2.371 1.033  C10 A1IOL 8  
A1IOL C13 C7  C 0 1 N N N N N N 91.368 -33.677 20.009 -1.246 -0.276 1.121  C13 A1IOL 9  
A1IOL C15 C8  C 0 1 N N N N N N 92.252 -35.307 21.814 -3.584 -0.404 0.249  C15 A1IOL 10 
A1IOL C17 C9  C 0 1 N N N N N N 93.220 -38.777 22.132 -7.207 -0.787 -0.497 C17 A1IOL 11 
A1IOL C20 C10 C 0 1 N N N N N N 85.153 -30.480 21.655 4.622  -2.489 -1.807 C20 A1IOL 12 
A1IOL C21 C11 C 0 1 N N N N N N 85.327 -27.053 17.759 1.432  4.021  1.489  C21 A1IOL 13 
A1IOL N   N3  N 0 1 N N N N N N 85.036 -28.461 17.485 1.308  3.091  0.364  N   A1IOL 14 
A1IOL C   C12 C 0 1 N N N N N N 84.339 -28.734 16.318 0.446  3.365  -0.630 C   A1IOL 15 
A1IOL O   O1  O 0 1 N N N N N N 84.029 -27.850 15.543 -0.216 4.384  -0.576 O   A1IOL 16 
A1IOL C1  C13 C 0 1 N N N N N N 85.466 -29.405 18.430 2.061  1.972  0.341  C1  A1IOL 17 
A1IOL C11 C14 C 0 1 N N N N N N 88.894 -33.575 19.481 1.070  -0.154 1.999  C11 A1IOL 18 
A1IOL C12 C15 C 0 1 N N S N N N 90.294 -33.219 19.015 -0.356 -0.500 2.345  C12 A1IOL 19 
A1IOL C14 C16 C 0 1 N N N N N N 91.185 -35.022 20.728 -2.693 -0.628 1.472  C14 A1IOL 20 
A1IOL C16 C17 C 0 1 N N N N N N 92.120 -36.628 22.576 -5.031 -0.755 0.600  C16 A1IOL 21 
A1IOL C18 C18 C 0 1 N N N N N N 92.966 -40.146 21.543 -8.084 -0.567 -1.703 C18 A1IOL 22 
A1IOL C19 C19 C 0 1 N N N N N N 87.359 -31.741 19.979 3.213  -0.752 1.196  C19 A1IOL 23 
A1IOL C2  C20 C 0 1 Y N N N N N 85.081 -30.739 18.077 1.938  1.080  -0.745 C2  A1IOL 24 
A1IOL C3  C21 C 0 1 Y N N N N N 84.690 -32.876 17.872 1.998  -0.499 -2.266 C3  A1IOL 25 
A1IOL C9  C22 C 0 1 N N R N N N 87.308 -32.450 22.656 1.013  -2.305 -0.453 C9  A1IOL 26 
A1IOL N2  N4  N 0 1 Y N N N N N 84.152 -32.353 16.806 1.120  0.387  -2.660 N2  A1IOL 27 
A1IOL N4  N5  N 0 1 N N N N N N 88.297 -32.781 20.394 1.863  -1.074 1.414  N4  A1IOL 28 
A1IOL N5  N6  N 0 1 N N N N N N 90.456 -31.758 18.868 -0.814 0.356  3.447  N5  A1IOL 29 
A1IOL N6  N7  N 0 1 N N N N N N 92.381 -37.807 21.756 -5.884 -0.541 -0.572 N6  A1IOL 30 
A1IOL O1  O2  O 0 1 N N N N N N 86.111 -29.055 19.408 2.840  1.735  1.248  O1  A1IOL 31 
A1IOL O2  O3  O 0 1 N N N N N N 83.777 -32.327 21.114 3.910  -3.085 0.409  O2  A1IOL 32 
A1IOL O3  O4  O 0 1 N N N N N N 87.531 -32.772 24.032 -0.123 -3.116 -0.760 O3  A1IOL 33 
A1IOL O4  O5  O 0 1 N N N N N N 88.331 -34.552 19.013 1.503  0.951  2.247  O4  A1IOL 34 
A1IOL O5  O6  O 0 1 N N N N N N 94.104 -38.579 22.964 -7.691 -1.186 0.540  O5  A1IOL 35 
A1IOL H4  H1  H 0 1 N N N N N N 83.176 -31.475 14.770 -1.142 3.823  -2.512 H4  A1IOL 36 
A1IOL H6  H2  H 0 1 N N N N N N 82.382 -29.864 14.772 -0.122 2.969  -3.694 H6  A1IOL 37 
A1IOL H5  H3  H 0 1 N N N N N N 83.970 -30.081 13.963 -1.403 2.091  -2.826 H5  A1IOL 38 
A1IOL H   H4  H 0 1 N N N N N N 86.040 -33.357 19.964 4.526  -0.399 -0.502 H   A1IOL 39 
A1IOL H9  H5  H 0 1 N N N N N N 85.284 -32.862 23.199 2.094  -2.449 -2.299 H9  A1IOL 40 
A1IOL H8  H6  H 0 1 N N N N N N 85.926 -33.870 21.858 2.212  -3.885 -1.269 H8  A1IOL 41 
A1IOL H12 H7  H 0 1 N N N N N N 88.651 -34.008 22.048 0.340  -2.528 1.571  H12 A1IOL 42 
A1IOL H11 H8  H 0 1 N N N N N N 89.386 -32.371 22.130 1.973  -3.178 1.255  H11 A1IOL 43 
A1IOL H15 H9  H 0 1 N N N N N N 92.318 -33.732 19.456 -1.190 0.769  0.817  H15 A1IOL 44 
A1IOL H16 H10 H 0 1 N N N N N N 91.441 -32.902 20.786 -0.906 -0.911 0.303  H16 A1IOL 45 
A1IOL H19 H11 H 0 1 N N N N N N 93.237 -35.302 21.324 -3.527 0.642  -0.055 H19 A1IOL 46 
A1IOL H20 H12 H 0 1 N N N N N N 92.205 -34.491 22.550 -3.244 -1.039 -0.570 H20 A1IOL 47 
A1IOL H29 H13 H 0 1 N N N N N N 84.581 -30.360 22.587 5.598  -2.208 -1.410 H29 A1IOL 48 
A1IOL H31 H14 H 0 1 N N N N N N 86.187 -30.138 21.813 4.642  -3.535 -2.114 H31 A1IOL 49 
A1IOL H30 H15 H 0 1 N N N N N N 84.686 -29.881 20.859 4.386  -1.862 -2.668 H30 A1IOL 50 
A1IOL H32 H16 H 0 1 N N N N N N 85.880 -26.970 18.706 2.201  4.760  1.266  H32 A1IOL 51 
A1IOL H33 H17 H 0 1 N N N N N N 85.936 -26.639 16.942 0.479  4.526  1.650  H33 A1IOL 52 
A1IOL H34 H18 H 0 1 N N N N N N 84.384 -26.492 17.834 1.707  3.470  2.388  H34 A1IOL 53 
A1IOL H2  H19 H 0 1 N N N N N N 90.481 -33.706 18.047 -0.412 -1.545 2.649  H2  A1IOL 54 
A1IOL H18 H20 H 0 1 N N N N N N 90.195 -35.026 21.207 -2.750 -1.673 1.776  H18 A1IOL 55 
A1IOL H17 H21 H 0 1 N N N N N N 91.233 -35.825 19.977 -3.033 0.007  2.290  H17 A1IOL 56 
A1IOL H22 H22 H 0 1 N N N N N N 91.096 -36.700 22.972 -5.087 -1.801 0.903  H22 A1IOL 57 
A1IOL H21 H23 H 0 1 N N N N N N 92.836 -36.620 23.411 -5.371 -0.120 1.418  H21 A1IOL 58 
A1IOL H26 H24 H 0 1 N N N N N N 93.674 -40.869 21.975 -8.459 0.457  -1.696 H26 A1IOL 59 
A1IOL H24 H25 H 0 1 N N N N N N 91.937 -40.459 21.773 -7.504 -0.735 -2.610 H24 A1IOL 60 
A1IOL H25 H26 H 0 1 N N N N N N 93.102 -40.107 20.452 -8.923 -1.261 -1.673 H25 A1IOL 61 
A1IOL H27 H27 H 0 1 N N N N N N 87.633 -31.393 18.972 3.845  -1.450 1.746  H27 A1IOL 62 
A1IOL H28 H28 H 0 1 N N N N N N 87.419 -30.901 20.687 3.405  0.261  1.549  H28 A1IOL 63 
A1IOL H3  H29 H 0 1 N N N N N N 84.676 -33.936 18.079 2.259  -1.398 -2.804 H3  A1IOL 64 
A1IOL H1  H30 H 0 1 N N N N N N 87.332 -31.353 22.582 0.794  -1.274 -0.728 H1  A1IOL 65 
A1IOL H13 H31 H 0 1 N N N N N N 91.386 -31.554 18.561 -0.282 0.180  4.287  H13 A1IOL 66 
A1IOL H35 H32 H 0 1 N N N N N N 89.800 -31.416 18.195 -0.771 1.331  3.190  H35 A1IOL 67 
A1IOL H23 H34 H 0 1 N N N N N N 91.913 -37.892 20.877 -5.496 -0.221 -1.402 H23 A1IOL 68 
A1IOL H7  H35 H 0 1 N N N N N N 83.313 -32.127 21.919 3.940  -4.036 0.232  H7  A1IOL 69 
A1IOL H10 H36 H 0 1 N N N N N N 86.796 -32.469 24.552 -0.924 -2.868 -0.279 H10 A1IOL 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IOL C5  N3  SING N N 1  
A1IOL O   C   DOUB N N 2  
A1IOL N3  C   SING N N 3  
A1IOL N3  C4  SING N N 4  
A1IOL C   N   SING N N 5  
A1IOL N2  C4  SING Y N 6  
A1IOL N2  C3  DOUB Y N 7  
A1IOL C4  C2  DOUB Y N 8  
A1IOL N   C21 SING N N 9  
A1IOL N   C1  SING N N 10 
A1IOL C3  N1  SING Y N 11 
A1IOL C2  C1  SING N N 12 
A1IOL C2  N1  SING Y N 13 
A1IOL C1  O1  DOUB N N 14 
A1IOL N1  C6  SING N N 15 
A1IOL N5  C12 SING N N 16 
A1IOL O4  C11 DOUB N N 17 
A1IOL C12 C11 SING N N 18 
A1IOL C12 C13 SING N N 19 
A1IOL C11 N4  SING N N 20 
A1IOL C6  C19 SING N N 21 
A1IOL C6  C7  SING N N 22 
A1IOL C19 N4  SING N N 23 
A1IOL C13 C14 SING N N 24 
A1IOL N4  C10 SING N N 25 
A1IOL C14 C15 SING N N 26 
A1IOL O2  C7  SING N N 27 
A1IOL C7  C20 SING N N 28 
A1IOL C7  C8  SING N N 29 
A1IOL C18 C17 SING N N 30 
A1IOL N6  C17 SING N N 31 
A1IOL N6  C16 SING N N 32 
A1IOL C15 C16 SING N N 33 
A1IOL C10 C9  SING N N 34 
A1IOL C17 O5  DOUB N N 35 
A1IOL C8  C9  SING N N 36 
A1IOL C9  O3  SING N N 37 
A1IOL C5  H4  SING N N 38 
A1IOL C5  H6  SING N N 39 
A1IOL C5  H5  SING N N 40 
A1IOL C6  H   SING N N 41 
A1IOL C8  H9  SING N N 42 
A1IOL C8  H8  SING N N 43 
A1IOL C10 H12 SING N N 44 
A1IOL C10 H11 SING N N 45 
A1IOL C13 H15 SING N N 46 
A1IOL C13 H16 SING N N 47 
A1IOL C15 H19 SING N N 48 
A1IOL C15 H20 SING N N 49 
A1IOL C20 H29 SING N N 50 
A1IOL C20 H31 SING N N 51 
A1IOL C20 H30 SING N N 52 
A1IOL C21 H32 SING N N 53 
A1IOL C21 H33 SING N N 54 
A1IOL C21 H34 SING N N 55 
A1IOL C12 H2  SING N N 56 
A1IOL C14 H18 SING N N 57 
A1IOL C14 H17 SING N N 58 
A1IOL C16 H22 SING N N 59 
A1IOL C16 H21 SING N N 60 
A1IOL C18 H26 SING N N 61 
A1IOL C18 H24 SING N N 62 
A1IOL C18 H25 SING N N 63 
A1IOL C19 H27 SING N N 64 
A1IOL C19 H28 SING N N 65 
A1IOL C3  H3  SING N N 66 
A1IOL C9  H1  SING N N 67 
A1IOL N5  H13 SING N N 68 
A1IOL N5  H35 SING N N 69 
A1IOL N6  H23 SING N N 70 
A1IOL O2  H7  SING N N 71 
A1IOL O3  H10 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IOL InChI            InChI                1.06  "InChI=1S/C22H35N7O6/c1-13(30)24-8-6-5-7-15(23)19(32)28-10-14(31)9-22(2,35)16(11-28)29-12-25-18-17(29)20(33)27(4)21(34)26(18)3/h12,14-16,31,35H,5-11,23H2,1-4H3,(H,24,30)/t14-,15+,16+,22+/m1/s1" 
A1IOL InChIKey         InChI                1.06  GVNVRCRSNWOHEA-YDGQEPMXSA-N                                                                                                                                                                       
A1IOL SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(C)c2ncn([C@H]3CN(C[C@H](O)C[C@]3(C)O)C(=O)[C@@H](N)CCCCNC(C)=O)c2C1=O"                                                                                                                 
A1IOL SMILES           CACTVS               3.385 "CN1C(=O)N(C)c2ncn([CH]3CN(C[CH](O)C[C]3(C)O)C(=O)[CH](N)CCCCNC(C)=O)c2C1=O"                                                                                                                      
A1IOL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCCC[C@@H](C(=O)N1C[C@@H](C[C@]([C@H](C1)n2cnc3c2C(=O)N(C(=O)N3C)C)(C)O)O)N"                                                                                                              
A1IOL SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCCCC(C(=O)N1CC(CC(C(C1)n2cnc3c2C(=O)N(C(=O)N3C)C)(C)O)O)N"                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           A1IOL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(5~{S})-5-azanyl-6-[(3~{S},4~{S},6~{R})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-6-oxidanylidene-hexyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IOL "Create component" 2024-09-13 PDBE 
A1IOL "Initial release"  2024-10-16 RCSB 
# 
