data_BQL
# 
_chem_comp.id                                    BQL 
_chem_comp.name                                  "[(2~{S})-2-azanyl-3-oxidanylidene-propyl] [(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H18 N3 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-03-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        395.259 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BQL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6J5V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BQL N     N1  N 0 1 N N N N N N 103.093 81.218 62.750 -5.219 2.275  -1.112 N     BQL 1  
BQL CA    C1  C 0 1 N N S N N N 101.781 81.639 63.309 -5.830 0.947  -0.973 CA    BQL 2  
BQL C     C2  C 0 1 N N N N N N 101.653 83.121 63.464 -7.291 1.099  -0.635 C     BQL 3  
BQL O     O1  O 0 1 N N N N N N 100.590 83.688 63.148 -7.773 2.201  -0.522 O     BQL 4  
BQL CB    C3  C 0 1 N N N N N N 101.571 80.979 64.660 -5.126 0.176  0.146  CB    BQL 5  
BQL "C1'" C4  C 0 1 N N R N N N 99.257  75.189 60.118 2.866  -0.627 -0.877 "C1'" BQL 6  
BQL C2    C5  C 0 1 N N N N N N 101.347 73.918 60.807 3.318  1.185  0.679  C2    BQL 7  
BQL "C2'" C6  C 0 1 N N R N N N 98.176  74.371 60.777 3.268  -1.787 0.070  "C2'" BQL 8  
BQL C3    C7  C 0 1 N N R N N N 98.624  76.418 62.001 0.908  -1.817 -0.540 C3    BQL 9  
BQL "C3'" C8  C 0 1 N N S N N N 97.747  75.184 61.975 2.043  -2.728 -0.032 "C3'" BQL 10 
BQL C4    C9  C 0 1 N N N N N N 102.431 72.640 59.188 4.840  2.895  0.212  C4    BQL 11 
BQL C5    C10 C 0 1 N N N N N N 101.487 72.992 58.241 5.116  2.293  -1.039 C5    BQL 12 
BQL "C5'" C11 C 0 1 N N N N N N 99.320  76.606 63.340 -0.251 -1.824 0.459  "C5'" BQL 13 
BQL C6    C12 C 0 1 N N N N N N 100.464 73.850 58.595 4.469  1.156  -1.378 C6    BQL 14 
BQL N1    N2  N 0 1 N N N N N N 100.385 74.308 59.842 3.567  0.605  -0.510 N1    BQL 15 
BQL N3    N3  N 0 1 N N N N N N 102.336 73.099 60.441 3.944  2.320  1.040  N3    BQL 16 
BQL O1    O2  O 0 1 N N N N N N 96.394  75.599 61.809 2.296  -3.780 -0.965 O1    BQL 17 
BQL O2    O3  O 0 1 N N N N N N 101.320 74.304 61.996 2.513  0.678  1.436  O2    BQL 18 
BQL O3    O4  O 0 1 N N N N N N 97.104  74.228 59.847 4.451  -2.438 -0.396 O3    BQL 19 
BQL O4    O5  O 0 1 N N N N N N 103.361 71.873 58.872 5.407  3.922  0.537  O4    BQL 20 
BQL "O4'" O6  O 0 1 N N N N N N 99.603  76.266 60.980 1.446  -0.489 -0.656 "O4'" BQL 21 
BQL "O5'" O7  O 0 1 N N N N N N 100.104 77.792 63.265 -1.340 -1.066 -0.071 "O5'" BQL 22 
BQL OP1   O8  O 0 1 N N N N N N 99.854  78.144 65.784 -2.466 -0.008 2.056  OP1   BQL 23 
BQL OP2   O9  O 0 1 N N N N N N 99.166  79.916 64.287 -3.294 -2.180 1.074  OP2   BQL 24 
BQL OP3   O10 O 0 1 N N N N N N 101.580 79.566 64.522 -3.768 -0.070 -0.227 OP3   BQL 25 
BQL P     P1  P 0 1 N N N N N N 100.163 78.830 64.485 -2.730 -0.860 0.716  P     BQL 26 
BQL H1    H1  H 0 1 N N N N N N 103.118 80.221 62.671 -5.623 2.780  -1.887 H1    BQL 27 
BQL H2    H2  H 0 1 N N N N N N 103.217 81.628 61.846 -5.299 2.802  -0.255 H2    BQL 28 
BQL H4    H4  H 0 1 N N N N N N 100.986 81.292 62.632 -5.729 0.400  -1.910 H4    BQL 29 
BQL H5    H5  H 0 1 N N N N N N 102.481 83.698 63.849 -7.907 0.223  -0.494 H5    BQL 30 
BQL H6    H6  H 0 1 N N N N N N 102.379 81.283 65.342 -5.150 0.764  1.063  H6    BQL 31 
BQL H7    H7  H 0 1 N N N N N N 100.603 81.298 65.073 -5.635 -0.773 0.310  H7    BQL 32 
BQL H8    H8  H 0 1 N N N N N N 98.867  75.585 59.169 3.069  -0.891 -1.915 H8    BQL 33 
BQL H9    H9  H 0 1 N N N N N N 98.571  73.395 61.096 3.399  -1.428 1.091  H9    BQL 34 
BQL H10   H10 H 0 1 N N N N N N 98.001  77.302 61.799 0.561  -2.166 -1.513 H10   BQL 35 
BQL H11   H11 H 0 1 N N N N N N 97.881  74.602 62.899 1.794  -3.137 0.947  H11   BQL 36 
BQL H12   H12 H 0 1 N N N N N N 101.549 72.601 57.236 5.830  2.738  -1.716 H12   BQL 37 
BQL H13   H13 H 0 1 N N N N N N 98.571  76.703 64.140 -0.574 -2.850 0.635  H13   BQL 38 
BQL H14   H14 H 0 1 N N N N N N 99.969  75.742 63.548 0.077  -1.380 1.399  H14   BQL 39 
BQL H15   H15 H 0 1 N N N N N N 99.730  74.149 57.861 4.667  0.683  -2.328 H15   BQL 40 
BQL H16   H16 H 0 1 N N N N N N 103.019 72.823 61.117 3.749  2.728  1.898  H16   BQL 41 
BQL H17   H17 H 0 1 N N N N N N 96.124  76.110 62.563 3.039  -4.349 -0.724 H17   BQL 42 
BQL H18   H18 H 0 1 N N N N N N 96.409  73.714 60.241 4.743  -3.171 0.164  H18   BQL 43 
BQL H19   H19 H 0 1 N N N N N N 99.097  78.553 66.186 -2.095 0.871  1.897  H19   BQL 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BQL C5    C6    DOUB N N 1  
BQL C5    C4    SING N N 2  
BQL C6    N1    SING N N 3  
BQL O4    C4    DOUB N N 4  
BQL C4    N3    SING N N 5  
BQL N1    "C1'" SING N N 6  
BQL N1    C2    SING N N 7  
BQL O3    "C2'" SING N N 8  
BQL "C1'" "C2'" SING N N 9  
BQL "C1'" "O4'" SING N N 10 
BQL N3    C2    SING N N 11 
BQL "C2'" "C3'" SING N N 12 
BQL C2    O2    DOUB N N 13 
BQL "O4'" C3    SING N N 14 
BQL O1    "C3'" SING N N 15 
BQL "C3'" C3    SING N N 16 
BQL C3    "C5'" SING N N 17 
BQL N     CA    SING N N 18 
BQL O     C     DOUB N N 19 
BQL "O5'" "C5'" SING N N 20 
BQL "O5'" P     SING N N 21 
BQL CA    C     SING N N 22 
BQL CA    CB    SING N N 23 
BQL OP2   P     DOUB N N 24 
BQL P     OP3   SING N N 25 
BQL P     OP1   SING N N 26 
BQL OP3   CB    SING N N 27 
BQL N     H1    SING N N 28 
BQL N     H2    SING N N 29 
BQL CA    H4    SING N N 30 
BQL C     H5    SING N N 31 
BQL CB    H6    SING N N 32 
BQL CB    H7    SING N N 33 
BQL "C1'" H8    SING N N 34 
BQL "C2'" H9    SING N N 35 
BQL C3    H10   SING N N 36 
BQL "C3'" H11   SING N N 37 
BQL C5    H12   SING N N 38 
BQL "C5'" H13   SING N N 39 
BQL "C5'" H14   SING N N 40 
BQL C6    H15   SING N N 41 
BQL N3    H16   SING N N 42 
BQL O1    H17   SING N N 43 
BQL O3    H18   SING N N 44 
BQL OP1   H19   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BQL InChI            InChI                1.03  "InChI=1S/C12H18N3O10P/c13-6(3-16)4-23-26(21,22)24-5-7-9(18)10(19)11(25-7)15-2-1-8(17)14-12(15)20/h1-3,6-7,9-11,18-19H,4-5,13H2,(H,21,22)(H,14,17,20)/t6-,7-,9-,10-,11-/m1/s1" 
BQL InChIKey         InChI                1.03  DGKQNNIXYUXPCL-JBSYKWBFSA-N                                                                                                                                                    
BQL SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CO[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O)C=O"                                                                                                      
BQL SMILES           CACTVS               3.385 "N[CH](CO[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O)C=O"                                                                                                             
BQL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OC[C@@H](C=O)N)O)O"                                                                                                   
BQL SMILES           "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OCC(C=O)N)O)O"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           BQL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "[(2~{S})-2-azanyl-3-oxidanylidene-propyl] [(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BQL "Create component" 2019-03-04 PDBJ 
BQL "Initial release"  2019-03-20 RCSB 
BQL "Modify PCM"       2024-09-27 PDBE 
# 
