data_DLL
# 
_chem_comp.id                                    DLL 
_chem_comp.name                                  "5'-O-[HYDROXY(PHENYLACETYL)PHOSPHORYL]ADENOSINE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H20 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-12-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        465.354 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DLL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2Y4N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DLL O      O      O 0 1 N N N 3.260 -7.933  -12.961 -5.051  -0.147 0.672  O      DLL 1  
DLL CB     CB     C 0 1 N N N 5.175 -7.434  -11.563 -5.474  0.963  -1.363 CB     DLL 2  
DLL CG     CG     C 0 1 Y N N 5.134 -6.040  -12.194 -6.862  1.096  -0.793 CG     DLL 3  
DLL CD2    CD2    C 0 1 Y N N 4.403 -5.029  -11.573 -7.193  2.198  -0.027 CD2    DLL 4  
DLL CD1    CD1    C 0 1 Y N N 5.959 -5.736  -13.276 -7.807  0.118  -1.041 CD1    DLL 5  
DLL CE2    CE2    C 0 1 Y N N 4.413 -3.736  -12.091 -8.467  2.319  0.496  CE2    DLL 6  
DLL CE1    CE1    C 0 1 Y N N 5.982 -4.438  -13.784 -9.081  0.239  -0.518 CE1    DLL 7  
DLL CZ     CZ     C 0 1 Y N N 5.224 -3.432  -13.177 -9.410  1.339  0.252  CZ     DLL 8  
DLL P      P      P 0 1 N N N 3.070 -10.714 -11.937 -2.437  -0.795 0.420  P      DLL 9  
DLL O2P    O2P    O 0 1 N N N 1.785 -10.238 -11.374 -3.103  -2.074 0.753  O2P    DLL 10 
DLL O3P    O3P    O 0 1 N N N 3.671 -11.944 -11.368 -2.308  0.104  1.750  O3P    DLL 11 
DLL O1P    O1P    O 0 1 N N N 4.239 -9.635  -11.752 -3.308  -0.005 -0.679 O1P    DLL 12 
DLL "O5'"  "O5'"  O 0 1 N N N 2.876 -10.846 -13.512 -0.969  -1.092 -0.171 "O5'"  DLL 13 
DLL "C5'"  "C5'"  C 0 1 N N N 3.946 -11.377 -14.142 0.007   -1.870 0.525  "C5'"  DLL 14 
DLL "O4'"  "O4'"  O 0 1 N N N 3.164 -10.188 -16.196 1.888   -0.656 -0.419 "O4'"  DLL 15 
DLL "O3'"  "O3'"  O 0 1 N N N 5.695 -12.701 -16.456 2.630   -3.986 -0.467 "O3'"  DLL 16 
DLL "C2'"  "C2'"  C 0 1 N N R 4.689 -10.971 -17.859 3.545   -1.981 0.595  "C2'"  DLL 17 
DLL "O2'"  "O2'"  O 0 1 N N N 4.001 -12.061 -18.487 4.750   -2.697 0.317  "O2'"  DLL 18 
DLL "C1'"  "C1'"  C 0 1 N N R 3.682 -9.882  -17.498 3.317   -0.856 -0.447 "C1'"  DLL 19 
DLL N9     N9     N 0 1 Y N N 4.398 -8.595  -17.568 4.017   0.367  -0.047 N9     DLL 20 
DLL C8     C8     C 0 1 Y N N 4.928 -7.859  -16.415 3.508   1.375  0.717  C8     DLL 21 
DLL N7     N7     N 0 1 Y N N 5.642 -6.743  -17.054 4.403   2.306  0.878  N7     DLL 22 
DLL C5     C5     C 0 1 Y N N 5.488 -6.840  -18.378 5.540   1.956  0.229  C5     DLL 23 
DLL C6     C6     C 0 1 Y N N 5.905 -6.037  -19.437 6.802   2.550  0.057  C6     DLL 24 
DLL CAZ    CAZ    C 0 1 N N N 4.038 -8.331  -12.091 -4.596  0.229  -0.382 CAZ    DLL 25 
DLL N6     N6     N 0 1 N N N 6.615 -4.925  -19.209 7.090   3.778  0.625  N6     DLL 26 
DLL "C4'"  "C4'"  C 0 1 N N R 3.956 -11.173 -15.648 1.284   -1.956 -0.314 "C4'"  DLL 27 
DLL N1     N1     N 0 1 Y N N 5.617 -6.407  -20.700 7.712   1.904  -0.665 N1     DLL 28 
DLL "C3'"  "C3'"  C 0 1 N N S 5.208 -11.355 -16.486 2.304   -2.881 0.377  "C3'"  DLL 29 
DLL C2     C2     C 0 1 Y N N 4.920 -7.510  -20.941 7.446   0.732  -1.211 C2     DLL 30 
DLL C4     C4     C 0 1 Y N N 4.752 -7.979  -18.682 5.308   0.706  -0.367 C4     DLL 31 
DLL N3     N3     N 0 1 Y N N 4.476 -8.276  -19.957 6.278   0.138  -1.076 N3     DLL 32 
DLL HB1C   HB1C   H 0 0 N N N 6.139 -7.904  -11.807 -5.517  0.407  -2.299 HB1C   DLL 33 
DLL HB2C   HB2C   H 0 0 N N N 5.050 -7.324  -10.476 -5.061  1.955  -1.549 HB2C   DLL 34 
DLL HD2    HD2    H 0 1 N N N 3.826 -5.249  -10.687 -6.456  2.964  0.163  HD2    DLL 35 
DLL HD1    HD1    H 0 1 N N N 6.578 -6.503  -13.719 -7.551  -0.741 -1.644 HD1    DLL 36 
DLL HE2    HE2    H 0 1 N N N 3.791 -2.971  -11.649 -8.725  3.180  1.095  HE2    DLL 37 
DLL HE1    HE1    H 0 1 N N N 6.587 -4.209  -14.649 -9.820  -0.525 -0.713 HE1    DLL 38 
DLL HZ     HZ     H 0 1 N N N 5.269 -2.420  -13.552 -10.405 1.434  0.661  HZ     DLL 39 
DLL H3P    H3P    H 0 1 N N N 3.800 -12.583 -12.059 -1.879  0.959  1.606  H3P    DLL 40 
DLL "H5'1" "H5'1" H 0 0 N N N 4.849 -10.901 -13.732 0.232   -1.399 1.482  "H5'1" DLL 41 
DLL "H5'2" "H5'2" H 0 0 N N N 3.906 -12.463 -13.971 -0.383  -2.874 0.697  "H5'2" DLL 42 
DLL "H4'"  "H4'"  H 0 1 N N N 3.444 -12.143 -15.734 1.049   -2.337 -1.308 "H4'"  DLL 43 
DLL "H1'"  "H1'"  H 0 1 N N N 2.822 -9.823  -18.182 3.641   -1.178 -1.437 "H1'"  DLL 44 
DLL "H3'"  "H3'"  H 0 1 N N N 5.803 -13.019 -17.345 3.312   -4.570 -0.106 "H3'"  DLL 45 
DLL HA     HA     H 0 1 N N N 6.069 -10.764 -16.140 1.916   -3.233 1.333  HA     DLL 46 
DLL "H2'"  "H2'"  H 0 1 N N N 5.483 -10.672 -18.559 3.560   -1.576 1.607  "H2'"  DLL 47 
DLL HB     HB     H 0 1 N N N 3.849 -11.855 -19.402 4.936   -3.411 0.941  HB     DLL 48 
DLL H8     H8     H 0 1 N N N 4.821 -8.080  -15.363 2.510   1.398  1.127  H8     DLL 49 
DLL H61N   H61N   H 0 0 N N N 6.792 -4.837  -18.229 6.417   4.240  1.150  H61N   DLL 50 
DLL H62N   H62N   H 0 0 N N N 7.484 -4.978  -19.701 7.965   4.178  0.499  H62N   DLL 51 
DLL H2     H2     H 0 1 N N N 4.710 -7.789  -21.963 8.215   0.241  -1.789 H2     DLL 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DLL O     CAZ    DOUB N N 1  
DLL CB    CG     SING N N 2  
DLL CB    CAZ    SING N N 3  
DLL CG    CD2    SING Y N 4  
DLL CG    CD1    DOUB Y N 5  
DLL CD2   CE2    DOUB Y N 6  
DLL CD1   CE1    SING Y N 7  
DLL CE2   CZ     SING Y N 8  
DLL CE1   CZ     DOUB Y N 9  
DLL P     O2P    DOUB N N 10 
DLL P     O3P    SING N N 11 
DLL P     O1P    SING N N 12 
DLL P     "O5'"  SING N N 13 
DLL O1P   CAZ    SING N N 14 
DLL "O5'" "C5'"  SING N N 15 
DLL "C5'" "C4'"  SING N N 16 
DLL "O4'" "C1'"  SING N N 17 
DLL "O4'" "C4'"  SING N N 18 
DLL "O3'" "C3'"  SING N N 19 
DLL "C2'" "O2'"  SING N N 20 
DLL "C2'" "C1'"  SING N N 21 
DLL "C2'" "C3'"  SING N N 22 
DLL "C1'" N9     SING N N 23 
DLL N9    C8     SING Y N 24 
DLL N9    C4     SING Y N 25 
DLL C8    N7     DOUB Y N 26 
DLL N7    C5     SING Y N 27 
DLL C5    C6     DOUB Y N 28 
DLL C5    C4     SING Y N 29 
DLL C6    N6     SING N N 30 
DLL C6    N1     SING Y N 31 
DLL "C4'" "C3'"  SING N N 32 
DLL N1    C2     DOUB Y N 33 
DLL C2    N3     SING Y N 34 
DLL CB    HB1C   SING N N 35 
DLL CB    HB2C   SING N N 36 
DLL CD2   HD2    SING N N 37 
DLL CD1   HD1    SING N N 38 
DLL CE2   HE2    SING N N 39 
DLL CE1   HE1    SING N N 40 
DLL CZ    HZ     SING N N 41 
DLL O3P   H3P    SING N N 42 
DLL "C5'" "H5'1" SING N N 43 
DLL "C5'" "H5'2" SING N N 44 
DLL "C4'" "H4'"  SING N N 45 
DLL "C1'" "H1'"  SING N N 46 
DLL "O3'" "H3'"  SING N N 47 
DLL "C3'" HA     SING N N 48 
DLL "C2'" "H2'"  SING N N 49 
DLL "O2'" HB     SING N N 50 
DLL C8    H8     SING N N 51 
DLL N6    H61N   SING N N 52 
DLL N6    H62N   SING N N 53 
DLL C2    H2     SING N N 54 
DLL C4    N3     DOUB Y N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DLL SMILES_CANONICAL CACTVS               3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)Cc4ccccc4)[C@@H](O)[C@H]3O"                                                                                                                               
DLL SMILES           CACTVS               3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)Cc4ccccc4)[CH](O)[CH]3O"                                                                                                                                     
DLL SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "c1ccc(cc1)CC(=O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                                            
DLL SMILES           "OpenEye OEToolkits" 1.6.1 "c1ccc(cc1)CC(=O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                                 
DLL InChI            InChI                1.03  "InChI=1S/C18H20N5O8P/c19-16-13-17(21-8-20-16)23(9-22-13)18-15(26)14(25)11(30-18)7-29-32(27,28)31-12(24)6-10-4-2-1-3-5-10/h1-5,8-9,11,14-15,18,25-26H,6-7H2,(H,27,28)(H2,19,20,21)/t11-,14-,15-,18-/m1/s1" 
DLL InChIKey         InChI                1.03  VUKDZGAUWUDQRZ-XKLVTHTNSA-N                                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DLL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] 2-phenylethanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DLL "Create component"     2010-12-15 EBI  
DLL "Modify aromatic_flag" 2011-06-04 RCSB 
DLL "Modify descriptor"    2011-06-04 RCSB 
# 
