data_LDL
# 
_chem_comp.id                                    LDL 
_chem_comp.name                                  "4-[[4-[4-(imidazolidin-2-ylideneamino)phenyl]-1,2,3-triazol-1-yl]methyl]benzohydrazide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-01 
_chem_comp.pdbx_modified_date                    2023-01-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        376.415 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LDL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A8Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LDL N1  N1  N 0 1 Y N N -11.450 -9.124  -4.464  1.293  1.795  0.745  N1  LDL 1  
LDL N3  N2  N 0 1 Y N N -12.367 -9.620  -6.352  0.157  1.970  -1.029 N3  LDL 2  
LDL C4  C1  C 0 1 Y N N -7.785  -11.278 -4.412  5.550  0.924  -0.255 C4  LDL 3  
LDL C5  C2  C 0 1 Y N N -8.787  -10.332 -4.562  4.504  1.651  0.275  C5  LDL 4  
LDL C6  C3  C 0 1 Y N N -9.244  -9.582  -3.491  3.572  1.035  1.091  C6  LDL 5  
LDL C7  C4  C 0 1 N N N -10.364 -8.569  -3.643  2.432  1.836  1.665  C7  LDL 6  
LDL C8  C5  C 0 1 Y N N -13.159 -10.114 -5.363  -0.692 1.518  -0.090 C8  LDL 7  
LDL C10 C6  C 0 1 Y N N -14.610 -11.397 -6.931  -2.734 1.372  -1.513 C10 LDL 8  
LDL C13 C7  C 0 1 Y N N -16.644 -11.486 -5.061  -4.218 0.448  0.651  C13 LDL 9  
LDL C15 C8  C 0 1 N N N -18.760 -12.963 -7.673  -6.654 -0.763 -0.252 C15 LDL 10 
LDL C17 C9  C 0 1 N N N -19.598 -12.631 -9.781  -6.792 -2.782 0.861  C17 LDL 11 
LDL C1  C10 C 0 1 Y N N -7.160  -11.480 -3.186  5.666  -0.437 0.035  C1  LDL 12 
LDL C2  C11 C 0 1 Y N N -7.621  -10.731 -2.110  4.725  -1.051 0.863  C2  LDL 13 
LDL C3  C12 C 0 1 Y N N -8.651  -9.810  -2.261  3.681  -0.313 1.381  C3  LDL 14 
LDL N2  N3  N 0 1 Y N N -11.319 -9.035  -5.807  1.318  2.124  -0.498 N2  LDL 15 
LDL C9  C13 C 0 1 Y N N -14.406 -10.816 -5.678  -2.132 1.204  -0.267 C9  LDL 16 
LDL C11 C14 C 0 1 Y N N -15.795 -12.046 -7.236  -4.070 1.086  -1.678 C11 LDL 17 
LDL C12 C15 C 0 1 Y N N -15.441 -10.867 -4.750  -2.882 0.740  0.814  C12 LDL 18 
LDL C14 C16 C 0 1 Y N N -16.822 -12.097 -6.295  -4.824 0.626  -0.595 C14 LDL 19 
LDL N4  N4  N 0 1 N N N -18.059 -12.760 -6.518  -6.153 0.341  -0.757 N4  LDL 20 
LDL N5  N5  N 0 1 N N N -19.825 -13.756 -7.749  -7.967 -1.119 -0.370 N5  LDL 21 
LDL C16 C17 C 0 1 N N N -20.608 -13.390 -8.922  -8.178 -2.405 0.309  C16 LDL 22 
LDL N6  N6  N 0 1 N N N -18.509 -12.406 -8.840  -5.916 -1.679 0.441  N6  LDL 23 
LDL C18 C18 C 0 1 Y N N -12.575 -9.800  -4.159  0.038  1.397  1.057  C18 LDL 24 
LDL C19 C19 C 0 1 N N N -6.050  -12.474 -3.062  6.781  -1.224 -0.534 C19 LDL 25 
LDL N7  N7  N 0 1 N N N -5.079  -12.224 -2.174  6.891  -2.537 -0.253 N7  LDL 26 
LDL N8  N8  N 0 1 N N N -3.973  -13.109 -2.048  7.921  -3.265 -0.778 N8  LDL 27 
LDL O1  O1  O 0 1 N N N -5.951  -13.462 -3.786  7.598  -0.686 -1.255 O1  LDL 28 
LDL H1  H1  H 0 1 N N N -7.484  -11.870 -5.264  6.274  1.405  -0.895 H1  LDL 29 
LDL H2  H2  H 0 1 N N N -9.222  -10.176 -5.538  4.413  2.704  0.052  H2  LDL 30 
LDL H3  H3  H 0 1 N N N -9.970  -7.663  -4.127  2.748  2.870  1.805  H3  LDL 31 
LDL H4  H4  H 0 1 N N N -10.757 -8.311  -2.648  2.138  1.413  2.626  H4  LDL 32 
LDL H5  H5  H 0 1 N N N -13.830 -11.339 -7.676  -2.152 1.732  -2.349 H5  LDL 33 
LDL H6  H6  H 0 1 N N N -17.447 -11.492 -4.338  -4.798 0.088  1.488  H6  LDL 34 
LDL H7  H7  H 0 1 N N N -19.267 -13.236 -10.638 -6.822 -2.855 1.948  H7  LDL 35 
LDL H8  H8  H 0 1 N N N -20.016 -11.680 -10.143 -6.451 -3.721 0.425  H8  LDL 36 
LDL H9  H9  H 0 1 N N N -7.170  -10.867 -1.138  4.810  -2.103 1.091  H9  LDL 37 
LDL H10 H10 H 0 1 N N N -8.997  -9.259  -1.399  2.950  -0.788 2.019  H10 LDL 38 
LDL H11 H11 H 0 1 N N N -15.923 -12.512 -8.202  -4.536 1.217  -2.643 H11 LDL 39 
LDL H12 H12 H 0 1 N N N -15.307 -10.420 -3.776  -2.413 0.602  1.777  H12 LDL 40 
LDL H13 H13 H 0 1 N N N -20.052 -14.486 -7.105  -8.650 -0.606 -0.829 H13 LDL 41 
LDL H14 H14 H 0 1 N N N -21.457 -12.746 -8.647  -8.524 -3.160 -0.397 H14 LDL 42 
LDL H15 H15 H 0 1 N N N -20.980 -14.284 -9.445  -8.893 -2.288 1.123  H15 LDL 43 
LDL H16 H16 H 0 1 N N N -17.677 -11.894 -9.053  -4.968 -1.610 0.631  H16 LDL 44 
LDL H17 H17 H 0 1 N N N -12.942 -10.044 -3.173  -0.314 1.054  2.019  H17 LDL 45 
LDL H18 H18 H 0 1 N N N -5.132  -11.410 -1.596  6.238  -2.966 0.323  H18 LDL 46 
LDL H19 H19 H 0 1 N N N -3.351  -12.768 -1.343  8.811  -2.856 -0.537 H19 LDL 47 
LDL H20 H20 H 0 1 N N N -4.301  -14.018 -1.792  7.872  -4.228 -0.481 H20 LDL 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LDL C17 C16 SING N N 1  
LDL C17 N6  SING N N 2  
LDL C16 N5  SING N N 3  
LDL N6  C15 SING N N 4  
LDL N5  C15 SING N N 5  
LDL C15 N4  DOUB N N 6  
LDL C11 C10 DOUB Y N 7  
LDL C11 C14 SING Y N 8  
LDL C10 C9  SING Y N 9  
LDL N4  C14 SING N N 10 
LDL N3  N2  DOUB Y N 11 
LDL N3  C8  SING Y N 12 
LDL C14 C13 DOUB Y N 13 
LDL N2  N1  SING Y N 14 
LDL C9  C8  SING N N 15 
LDL C9  C12 DOUB Y N 16 
LDL C8  C18 DOUB Y N 17 
LDL C13 C12 SING Y N 18 
LDL C5  C4  DOUB Y N 19 
LDL C5  C6  SING Y N 20 
LDL N1  C18 SING Y N 21 
LDL N1  C7  SING N N 22 
LDL C4  C1  SING Y N 23 
LDL O1  C19 DOUB N N 24 
LDL C7  C6  SING N N 25 
LDL C6  C3  DOUB Y N 26 
LDL C1  C19 SING N N 27 
LDL C1  C2  DOUB Y N 28 
LDL C19 N7  SING N N 29 
LDL C3  C2  SING Y N 30 
LDL N7  N8  SING N N 31 
LDL C4  H1  SING N N 32 
LDL C5  H2  SING N N 33 
LDL C7  H3  SING N N 34 
LDL C7  H4  SING N N 35 
LDL C10 H5  SING N N 36 
LDL C13 H6  SING N N 37 
LDL C17 H7  SING N N 38 
LDL C17 H8  SING N N 39 
LDL C2  H9  SING N N 40 
LDL C3  H10 SING N N 41 
LDL C11 H11 SING N N 42 
LDL C12 H12 SING N N 43 
LDL N5  H13 SING N N 44 
LDL C16 H14 SING N N 45 
LDL C16 H15 SING N N 46 
LDL N6  H16 SING N N 47 
LDL C18 H17 SING N N 48 
LDL N7  H18 SING N N 49 
LDL N8  H19 SING N N 50 
LDL N8  H20 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LDL InChI            InChI                1.06  "InChI=1S/C19H20N8O/c20-24-18(28)15-3-1-13(2-4-15)11-27-12-17(25-26-27)14-5-7-16(8-6-14)23-19-21-9-10-22-19/h1-8,12H,9-11,20H2,(H,24,28)(H2,21,22,23)" 
LDL InChIKey         InChI                1.06  FNWSHZHKFUFPQJ-UHFFFAOYSA-N                                                                                                                            
LDL SMILES_CANONICAL CACTVS               3.385 "NNC(=O)c1ccc(Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)cc1"                                                                                                       
LDL SMILES           CACTVS               3.385 "NNC(=O)c1ccc(Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)cc1"                                                                                                       
LDL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)C(=O)NN"                                                                                                       
LDL SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)C(=O)NN"                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           LDL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[[4-[4-(imidazolidin-2-ylideneamino)phenyl]-1,2,3-triazol-1-yl]methyl]benzohydrazide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LDL "Create component"  2022-07-01 PDBE 
LDL "Modify descriptor" 2022-08-22 RCSB 
LDL "Initial release"   2023-01-25 RCSB 
# 
