data_LLL
#

_chem_comp.id                                   LLL
_chem_comp.name                                 
;(2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR
OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H39 N5 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "GENTAMICIN C1A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-11-02
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       449.542
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LLL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LLL  C11   C11   C  0  1  N  N  R   0.932   -7.120  29.442  -3.040   1.340  -0.079  C11   LLL   1  
LLL  O11   O11   O  0  1  N  N  N   0.006   -8.231  29.322  -2.774   0.350   0.917  O11   LLL   2  
LLL  C21   C21   C  0  1  N  N  R   0.327   -5.869  28.796  -3.764   2.525   0.562  C21   LLL   3  
LLL  N21   N21   N  0  1  N  N  N  -0.937   -5.604  29.411  -2.909   3.122   1.597  N21   LLL   4  
LLL  C31   C31   C  0  1  N  N  N   0.193   -6.064  27.247  -5.068   2.032   1.196  C31   LLL   5  
LLL  C41   C41   C  0  1  N  N  N   1.620   -6.317  26.667  -5.873   1.274   0.135  C41   LLL   6  
LLL  C51   C51   C  0  1  N  N  S   2.235   -7.603  27.376  -4.990   0.182  -0.475  C51   LLL   7  
LLL  O51   O51   O  0  1  N  N  N   2.241   -7.483  28.833  -3.855   0.774  -1.104  O51   LLL   8  
LLL  C61   C61   C  0  1  N  N  N   3.617   -7.974  26.892  -5.796  -0.601  -1.513  C61   LLL   9  
LLL  N61   N61   N  0  1  N  N  N   4.559   -8.059  27.977  -4.994  -1.728  -2.007  N61   LLL  10  
LLL  C12   C12   C  0  1  N  N  R  -1.402  -11.351  31.889   0.398  -2.442   0.687  C12   LLL  11  
LLL  N12   N12   N  0  1  N  N  N  -1.411  -12.321  32.940   1.385  -3.367   0.114  N12   LLL  12  
LLL  C22   C22   C  0  1  N  N  N  -0.254  -11.683  30.882  -1.012  -2.916   0.331  C22   LLL  13  
LLL  C32   C32   C  0  1  N  N  S  -0.231  -10.616  29.727  -2.040  -1.952   0.928  C32   LLL  14  
LLL  N32   N32   N  0  1  N  N  N   0.849  -10.924  28.776  -3.394  -2.407   0.587  N32   LLL  15  
LLL  C42   C42   C  0  1  N  N  R  -0.037   -9.177  30.342  -1.814  -0.550   0.360  C42   LLL  16  
LLL  C52   C52   C  0  1  N  N  S  -1.208   -8.873  31.354  -0.404  -0.076   0.715  C52   LLL  17  
LLL  O52   O52   O  0  1  N  N  N  -1.054   -7.575  31.919  -0.193   1.234   0.184  O52   LLL  18  
LLL  C62   C62   C  0  1  N  N  S  -1.216   -9.948  32.497   0.624  -1.040   0.118  C62   LLL  19  
LLL  O62   O62   O  0  1  N  N  N  -2.282   -9.661  33.394   1.941  -0.597   0.451  O62   LLL  20  
LLL  C13   C13   C  0  1  N  N  R  -2.178   -9.841  34.838   2.789  -0.970  -0.637  C13   LLL  21  
LLL  C23   C23   C  0  1  N  N  R  -3.623  -10.040  35.346   4.252  -0.863  -0.202  C23   LLL  22  
LLL  O23   O23   O  0  1  N  N  N  -4.176  -11.175  34.718   4.495  -1.754   0.888  O23   LLL  23  
LLL  C33   C33   C  0  1  N  N  R  -4.442   -8.726  35.015   4.538   0.577   0.239  C33   LLL  24  
LLL  N33   N33   N  0  1  N  N  N  -5.876   -8.853  35.435   5.973   0.734   0.511  N33   LLL  25  
LLL  C43   C43   C  0  1  N  N  R  -3.764   -7.446  35.740   4.120   1.530  -0.886  C43   LLL  26  
LLL  O43   O43   O  0  1  N  N  N  -3.785   -7.581  37.146   4.967   1.325  -2.019  O43   LLL  27  
LLL  C53   C53   C  0  1  N  N  N  -2.272   -7.340  35.297   2.668   1.239  -1.273  C53   LLL  28  
LLL  O53   O53   O  0  1  N  N  N  -1.567   -8.650  35.496   2.549  -0.102  -1.743  O53   LLL  29  
LLL  C83   C83   C  0  1  N  N  N  -4.432   -6.084  35.507   4.243   2.979  -0.409  C83   LLL  30  
LLL  C93   C93   C  0  1  N  N  N  -6.770   -9.616  34.548   6.190   0.302   1.898  C93   LLL  31  
LLL  H11   H11   H  0  1  N  N  N   1.113   -6.892  30.518  -2.099   1.680  -0.511  H11   LLL  32  
LLL  H21   H21   H  0  1  N  N  N   0.995   -4.990  28.955  -3.989   3.271  -0.200  H21   LLL  33  
LLL  H211  1H21  H  0  0  N  N  N  -0.869   -5.526  30.426  -3.428   3.891   1.994  H211  LLL  34  
LLL  H212  2H21  H  0  0  N  N  N  -1.340   -4.771  28.981  -2.812   2.432   2.326  H212  LLL  35  
LLL  H311  1H31  H  0  0  N  N  N  -0.330   -5.215  26.749  -5.646   2.884   1.554  H311  LLL  36  
LLL  H312  2H31  H  0  0  N  N  N  -0.532   -6.866  26.975  -4.841   1.366   2.028  H312  LLL  37  
LLL  H411  1H41  H  0  0  N  N  N   2.281   -5.424  26.754  -6.189   1.966  -0.646  H411  LLL  38  
LLL  H412  2H41  H  0  0  N  N  N   1.621   -6.400  25.555  -6.749   0.819   0.597  H412  LLL  39  
LLL  H51   H51   H  0  1  N  N  N   1.550   -8.431  27.079  -4.657  -0.495   0.312  H51   LLL  40  
LLL  H611  1H61  H  0  0  N  N  N   3.972   -7.273  26.101  -6.710  -0.979  -1.054  H611  LLL  41  
LLL  H612  2H61  H  0  0  N  N  N   3.599   -8.916  26.296  -6.052   0.055  -2.345  H612  LLL  42  
LLL  H11A  1H1   H  0  0  N  N  N   4.235   -8.700  28.701  -4.870  -2.358  -1.229  H11A  LLL  43  
LLL  H12A  2H1   H  0  0  N  N  N   5.492   -8.309  27.650  -5.563  -2.213  -2.685  H12A  LLL  44  
LLL  H12   H12   H  0  1  N  N  N  -2.370  -11.374  31.336   0.510  -2.417   1.771  H12   LLL  45  
LLL  H121  1H12  H  0  0  N  N  N  -0.504  -12.398  33.401   1.199  -4.274   0.515  H121  LLL  46  
LLL  H122  2H12  H  0  0  N  N  N  -2.160  -12.104  33.597   1.178  -3.438  -0.871  H122  LLL  47  
LLL  H221  1H22  H  0  0  N  N  N  -0.329  -12.724  30.489  -1.125  -2.941  -0.753  H221  LLL  48  
LLL  H222  2H22  H  0  0  N  N  N   0.735  -11.773  31.389  -1.173  -3.915   0.736  H222  LLL  49  
LLL  H32   H32   H  0  1  N  N  N  -1.200  -10.644  29.177  -1.928  -1.927   2.012  H32   LLL  50  
LLL  H321  1H32  H  0  0  N  N  N   0.780  -11.876  28.415  -3.458  -3.372   0.876  H321  LLL  51  
LLL  H322  2H32  H  0  0  N  N  N   0.864  -10.232  28.027  -4.031  -1.887   1.171  H322  LLL  52  
LLL  H42   H42   H  0  1  N  N  N   0.928   -9.131  30.899  -1.927  -0.575  -0.724  H42   LLL  53  
LLL  H52   H52   H  0  1  N  N  N  -2.175   -8.911  30.801  -0.292  -0.051   1.799  H52   LLL  54  
LLL  H3    H3    H  0  1  N  N  N  -1.759   -7.392  32.529   0.647   1.550   0.544  H3    LLL  55  
LLL  H62   H62   H  0  1  N  N  N  -0.247   -9.921  33.049   0.511  -1.065  -0.965  H62   LLL  56  
LLL  H13   H13   H  0  1  N  N  N  -1.523  -10.711  35.079   2.572  -1.998  -0.930  H13   LLL  57  
LLL  H23   H23   H  0  1  N  N  N  -3.652  -10.212  36.447   4.901  -1.124  -1.038  H23   LLL  58  
LLL  H2    H2    H  0  1  N  N  N  -5.065  -11.297  35.030   4.304  -2.646   0.568  H2    LLL  59  
LLL  H1    H1    H  0  1  N  N  N  -4.418   -8.579  33.910   3.968   0.803   1.140  H1    LLL  60  
LLL  H33   H33   H  0  1  N  N  N  -6.267   -7.924  35.594   6.167   1.723   0.482  H33   LLL  61  
LLL  H43   H43   H  0  1  N  N  N  -3.387   -6.830  37.571   4.666   1.935  -2.707  H43   LLL  62  
LLL  H531  1H53  H  0  0  N  N  N  -1.745   -6.504  35.814   2.357   1.928  -2.058  H531  LLL  63  
LLL  H532  2H53  H  0  0  N  N  N  -2.177   -6.974  34.248   2.029   1.375  -0.400  H532  LLL  64  
LLL  H831  1H83  H  0  0  N  N  N  -5.509   -6.144  35.787   3.599   3.131   0.457  H831  LLL  65  
LLL  H832  2H83  H  0  0  N  N  N  -3.965   -5.203  36.006   5.277   3.185  -0.135  H832  LLL  66  
LLL  H833  3H83  H  0  0  N  N  N  -4.515   -5.892  34.412   3.939   3.652  -1.211  H833  LLL  67  
LLL  H931  1H93  H  0  0  N  N  N  -6.343  -10.631  34.375   7.246   0.400   2.149  H931  LLL  68  
LLL  H932  2H93  H  0  0  N  N  N  -7.836   -9.710  34.860   5.598   0.924   2.569  H932  LLL  69  
LLL  H933  3H93  H  0  0  N  N  N  -6.721   -9.192  33.518   5.886  -0.740   2.006  H933  LLL  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LLL  C11  O11   SING  N  N   1  
LLL  C11  C21   SING  N  N   2  
LLL  C11  O51   SING  N  N   3  
LLL  C11  H11   SING  N  N   4  
LLL  O11  C42   SING  N  N   5  
LLL  C21  N21   SING  N  N   6  
LLL  C21  C31   SING  N  N   7  
LLL  C21  H21   SING  N  N   8  
LLL  N21  H211  SING  N  N   9  
LLL  N21  H212  SING  N  N  10  
LLL  C31  C41   SING  N  N  11  
LLL  C31  H311  SING  N  N  12  
LLL  C31  H312  SING  N  N  13  
LLL  C41  C51   SING  N  N  14  
LLL  C41  H411  SING  N  N  15  
LLL  C41  H412  SING  N  N  16  
LLL  C51  O51   SING  N  N  17  
LLL  C51  C61   SING  N  N  18  
LLL  C51  H51   SING  N  N  19  
LLL  C61  N61   SING  N  N  20  
LLL  C61  H611  SING  N  N  21  
LLL  C61  H612  SING  N  N  22  
LLL  N61  H11A  SING  N  N  23  
LLL  N61  H12A  SING  N  N  24  
LLL  C12  N12   SING  N  N  25  
LLL  C12  C22   SING  N  N  26  
LLL  C12  C62   SING  N  N  27  
LLL  C12  H12   SING  N  N  28  
LLL  N12  H121  SING  N  N  29  
LLL  N12  H122  SING  N  N  30  
LLL  C22  C32   SING  N  N  31  
LLL  C22  H221  SING  N  N  32  
LLL  C22  H222  SING  N  N  33  
LLL  C32  N32   SING  N  N  34  
LLL  C32  C42   SING  N  N  35  
LLL  C32  H32   SING  N  N  36  
LLL  N32  H321  SING  N  N  37  
LLL  N32  H322  SING  N  N  38  
LLL  C42  C52   SING  N  N  39  
LLL  C42  H42   SING  N  N  40  
LLL  C52  O52   SING  N  N  41  
LLL  C52  C62   SING  N  N  42  
LLL  C52  H52   SING  N  N  43  
LLL  O52  H3    SING  N  N  44  
LLL  C62  O62   SING  N  N  45  
LLL  C62  H62   SING  N  N  46  
LLL  O62  C13   SING  N  N  47  
LLL  C13  C23   SING  N  N  48  
LLL  C13  O53   SING  N  N  49  
LLL  C13  H13   SING  N  N  50  
LLL  C23  O23   SING  N  N  51  
LLL  C23  C33   SING  N  N  52  
LLL  C23  H23   SING  N  N  53  
LLL  O23  H2    SING  N  N  54  
LLL  C33  N33   SING  N  N  55  
LLL  C33  C43   SING  N  N  56  
LLL  C33  H1    SING  N  N  57  
LLL  N33  C93   SING  N  N  58  
LLL  N33  H33   SING  N  N  59  
LLL  C43  O43   SING  N  N  60  
LLL  C43  C53   SING  N  N  61  
LLL  C43  C83   SING  N  N  62  
LLL  O43  H43   SING  N  N  63  
LLL  C53  O53   SING  N  N  64  
LLL  C53  H531  SING  N  N  65  
LLL  C53  H532  SING  N  N  66  
LLL  C83  H831  SING  N  N  67  
LLL  C83  H832  SING  N  N  68  
LLL  C83  H833  SING  N  N  69  
LLL  C93  H931  SING  N  N  70  
LLL  C93  H932  SING  N  N  71  
LLL  C93  H933  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LLL  SMILES            ACDLabs               10.04  "O(C2C(O)C(OC1OC(CN)CCC1N)C(N)CC2N)C3OCC(O)(C(NC)C3O)C"  
LLL  SMILES_CANONICAL  CACTVS                3.341  "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CN)CC[C@H]3N)[C@@H]2O"  
LLL  SMILES            CACTVS                3.341  "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CN)CC[CH]3N)[CH]2O"  
LLL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]2[C@@H](C[C@@H]([C@H]([C@@H]2O)O[C@@H]3[C@@H](CC[C@H](O3)CN)N)N)N)O"  
LLL  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1(COC(C(C1NC)O)OC2C(CC(C(C2O)OC3C(CCC(O3)CN)N)N)N)O"  
LLL  InChI             InChI                 1.03   "InChI=1S/C19H39N5O7/c1-19(27)7-28-18(13(26)16(19)24-2)31-15-11(23)5-10(22)14(12(15)25)30-17-9(21)4-3-8(6-20)29-17/h8-18,24-27H,3-7,20-23H2,1-2H3/t8-,9+,10-,11+,12-,13+,14+,15-,16+,17+,18+,19-/m0/s1"  
LLL  InChIKey          InChI                 1.03   VEGXETMJINRLTH-BOZYPMBZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LLL  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside"  
LLL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4R,5R)-2-[(1S,2S,3R,4S,6R)-4,6-diamino-3-[(2R,3R,6S)-3-amino-6-(aminomethyl)oxan-2-yl]oxy-2-hydroxy-cyclohexyl]oxy-5-methyl-4-methylamino-oxane-3,5-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LLL  "Create component"   2005-11-02  RCSB  
LLL  "Modify descriptor"  2011-06-04  RCSB  
LLL  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LLL
_pdbx_chem_comp_synonyms.name        "GENTAMICIN C1A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
