data_OVL
# 
_chem_comp.id                                    OVL 
_chem_comp.name                                  "(1~{R},25~{R},26~{S},27~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-26,27-bis(oxidanyl)-28-oxa-2,4,6,9,14,17,21,23-octazatetracyclo[23.2.1.0^{2,10}.0^{3,8}]octacosa-3(8),4,6,9-tetraen-11-yne-16,22-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H36 N14 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-21 
_chem_comp.pdbx_modified_date                    2023-05-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        708.685 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OVL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZZE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OVL C17 C1  C 0 1 N N N 17.207 10.731 13.039 0.893  1.730  1.390  C17 OVL 1  
OVL C21 C2  C 0 1 N N N 12.442 8.923  12.015 2.639  -2.127 3.398  C21 OVL 2  
OVL C22 C3  C 0 1 N N N 14.151 10.002 10.800 0.233  -1.852 3.365  C22 OVL 3  
OVL C26 C4  C 0 1 N N R 16.864 9.404  8.004  -3.003 -2.206 1.973  C26 OVL 4  
OVL C02 C5  C 0 1 N N N 12.174 7.343  11.935 3.198  -2.958 2.272  C02 OVL 5  
OVL C04 C6  C 0 1 N N N 12.997 4.992  11.215 4.881  -3.491 0.641  C04 OVL 6  
OVL C05 C7  C 0 1 N N N 13.710 4.277  10.042 6.082  -2.825 -0.034 C05 OVL 7  
OVL C06 C8  C 0 1 N N N 15.317 4.258  10.199 5.721  -2.466 -1.477 C06 OVL 8  
OVL C08 C9  C 0 1 N N N 16.162 5.633  12.270 4.232  -0.684 -2.101 C08 OVL 9  
OVL C11 C10 C 0 1 N N N 17.022 7.146  14.234 2.608  0.972  -2.752 C11 OVL 10 
OVL C12 C11 C 0 1 N N R 18.545 7.210  14.531 2.327  2.452  -2.495 C12 OVL 11 
OVL C14 C12 C 0 1 N N R 19.834 9.122  14.188 0.910  3.640  -1.067 C14 OVL 12 
OVL C16 C13 C 0 1 Y N N 18.786 11.132 12.895 -0.199 2.556  0.947  C16 OVL 13 
OVL C18 C14 C 0 1 N N N 16.020 10.446 13.156 1.453  0.955  2.111  C18 OVL 14 
OVL C19 C15 C 0 1 N N N 14.454 10.113 13.383 1.677  0.090  3.287  C19 OVL 15 
OVL C23 C16 C 0 1 N N R 15.624 9.907  10.155 -0.909 -1.146 2.632  C23 OVL 16 
OVL C25 C17 C 0 1 N N R 17.122 8.390  9.068  -2.257 -1.538 0.790  C25 OVL 17 
OVL C27 C18 C 0 1 N N S 15.638 10.119 8.579  -2.264 -1.614 3.198  C27 OVL 18 
OVL C31 C19 C 0 1 Y N N 15.971 6.478  7.636  -1.480 -3.275 -0.867 C31 OVL 19 
OVL C33 C20 C 0 1 Y N N 17.683 5.060  7.553  -3.095 -3.260 -2.314 C33 OVL 20 
OVL C34 C21 C 0 1 Y N N 18.120 6.188  8.304  -3.418 -2.323 -1.317 C34 OVL 21 
OVL C36 C22 C 0 1 Y N N 20.224 5.238  8.611  -5.375 -1.846 -2.424 C36 OVL 22 
OVL C38 C23 C 0 1 Y N N 18.653 3.961  7.349  -4.001 -3.439 -3.374 C38 OVL 23 
OVL C41 C24 C 0 1 Y N N 20.684 12.272 12.321 -2.168 3.474  0.876  C41 OVL 24 
OVL C42 C25 C 0 1 Y N N 21.103 11.116 13.050 -1.437 3.970  -0.217 C42 OVL 25 
OVL C44 C26 C 0 1 Y N N 23.375 11.680 12.845 -3.261 5.219  -0.843 C44 OVL 26 
OVL C46 C27 C 0 1 Y N N 21.756 13.177 11.833 -3.490 3.922  1.053  C46 OVL 27 
OVL C48 C28 C 0 1 N N R 19.033 9.326  15.484 2.263  3.613  -0.333 C48 OVL 28 
OVL C49 C29 C 0 1 N N S 18.827 7.864  15.913 3.218  2.948  -1.345 C49 OVL 29 
OVL N03 N1  N 0 1 N N N 13.150 6.481  11.347 4.409  -2.612 1.738  N03 OVL 30 
OVL N07 N2  N 0 1 N N N 15.857 5.497  10.825 5.435  -1.013 -1.537 N07 OVL 31 
OVL N10 N3  N 0 1 N N N 16.656 6.873  12.800 3.943  0.650  -2.191 N10 OVL 32 
OVL N15 N4  N 0 1 Y N N 19.909 10.389 13.428 -0.192 3.383  -0.144 N15 OVL 33 
OVL N20 N5  N 0 1 N N N 13.919 9.256  12.083 1.519  -1.317 2.898  N20 OVL 34 
OVL N30 N6  N 0 1 Y N N 17.022 7.119  8.369  -2.379 -2.351 -0.422 N30 OVL 35 
OVL N32 N7  N 0 1 Y N N 16.344 5.286  7.158  -1.903 -3.807 -1.977 N32 OVL 36 
OVL N35 N8  N 0 1 Y N N 19.409 6.272  8.837  -4.557 -1.645 -1.412 N35 OVL 37 
OVL N37 N9  N 0 1 Y N N 19.904 4.080  7.884  -5.115 -2.715 -3.383 N37 OVL 38 
OVL N39 N10 N 0 1 N N N 18.315 2.772  6.604  -3.737 -4.347 -4.384 N39 OVL 39 
OVL N40 N11 N 0 1 Y N N 19.258 12.240 12.253 -1.364 2.624  1.551  N40 OVL 40 
OVL N43 N12 N 0 1 Y N N 22.442 10.848 13.292 -2.020 4.828  -1.046 N43 OVL 41 
OVL N45 N13 N 0 1 Y N N 23.071 12.829 12.137 -3.985 4.788  0.173  N45 OVL 42 
OVL N47 N14 N 0 1 N N N 21.468 14.370 11.091 -4.255 3.474  2.115  N47 OVL 43 
OVL O01 O1  O 0 1 N N N 11.128 6.915  12.373 2.586  -3.916 1.848  O01 OVL 44 
OVL O09 O2  O 0 1 N N N 15.987 4.676  13.018 3.460  -1.533 -2.501 O09 OVL 45 
OVL O13 O3  O 0 1 N N N 19.196 8.021  13.564 0.964  2.638  -2.091 O13 OVL 46 
OVL O24 O4  O 0 1 N N N 15.992 8.546  10.082 -0.885 -1.495 1.238  O24 OVL 47 
OVL O28 O5  O 0 1 N N N 15.698 11.447 8.303  -2.991 -0.507 3.735  O28 OVL 48 
OVL O29 O6  O 0 1 N N N 18.024 10.144 7.912  -4.382 -1.834 1.982  O29 OVL 49 
OVL O50 O7  O 0 1 N N N 20.026 7.385  16.441 4.166  3.901  -1.831 O50 OVL 50 
OVL O51 O8  O 0 1 N N N 19.765 9.971  16.442 2.697  4.940  -0.031 O51 OVL 51 
OVL H1  H1  H 0 1 N N N 12.013 9.400  11.121 2.287  -2.783 4.194  H1  OVL 52 
OVL H2  H2  H 0 1 N N N 11.949 9.320  12.915 3.418  -1.470 3.787  H2  OVL 53 
OVL H3  H3  H 0 1 N N N 13.940 11.065 10.991 0.137  -1.681 4.438  H3  OVL 54 
OVL H4  H4  H 0 1 N N N 13.438 9.615  10.057 0.189  -2.922 3.162  H4  OVL 55 
OVL H5  H5  H 0 1 N N N 16.604 8.912  7.055  -2.893 -3.290 1.940  H5  OVL 56 
OVL H6  H6  H 0 1 N N N 11.921 4.784  11.117 4.082  -3.629 -0.087 H6  OVL 57 
OVL H7  H7  H 0 1 N N N 13.374 4.543  12.146 5.176  -4.458 1.049  H7  OVL 58 
OVL H8  H8  H 0 1 N N N 13.455 4.798  9.107  6.348  -1.919 0.510  H8  OVL 59 
OVL H9  H9  H 0 1 N N N 13.350 3.239  9.993  6.927  -3.513 -0.032 H9  OVL 60 
OVL H10 H10 H 0 1 N N N 15.598 3.398  10.825 6.557  -2.703 -2.134 H10 OVL 61 
OVL H11 H11 H 0 1 N N N 15.765 4.146  9.201  4.839  -3.027 -1.786 H11 OVL 62 
OVL H12 H12 H 0 1 N N N 16.579 8.112  14.519 1.847  0.363  -2.264 H12 OVL 63 
OVL H13 H13 H 0 1 N N N 16.589 6.347  14.853 2.603  0.777  -3.824 H13 OVL 64 
OVL H14 H14 H 0 1 N N N 18.955 6.189  14.527 2.526  3.038  -3.391 H14 OVL 65 
OVL H15 H15 H 0 1 N N N 20.856 8.831  14.473 0.768  4.619  -1.530 H15 OVL 66 
OVL H16 H16 H 0 1 N N N 13.883 11.049 13.473 2.685  0.251  3.669  H16 OVL 67 
OVL H17 H17 H 0 1 N N N 14.329 9.517  14.299 0.951  0.336  4.062  H17 OVL 68 
OVL H18 H18 H 0 1 N N N 16.342 10.561 10.671 -0.812 -0.066 2.748  H18 OVL 69 
OVL H19 H19 H 0 1 N N N 18.105 8.533  9.540  -2.636 -0.530 0.618  H19 OVL 70 
OVL H20 H20 H 0 1 N N N 14.729 9.661  8.162  -2.115 -2.379 3.960  H20 OVL 71 
OVL H21 H21 H 0 1 N N N 14.991 6.908  7.487  -0.553 -3.526 -0.373 H21 OVL 72 
OVL H22 H22 H 0 1 N N N 21.220 5.298  9.025  -6.293 -1.279 -2.470 H22 OVL 73 
OVL H23 H23 H 0 1 N N N 24.412 11.451 13.042 -3.703 5.921  -1.534 H23 OVL 74 
OVL H24 H24 H 0 1 N N N 18.068 9.809  15.273 2.194  3.016  0.576  H24 OVL 75 
OVL H25 H25 H 0 1 N N N 17.967 7.758  16.590 3.736  2.109  -0.881 H25 OVL 76 
OVL H26 H26 H 0 1 N N N 13.991 6.896  11.000 4.919  -1.850 2.052  H26 OVL 77 
OVL H27 H27 H 0 1 N N N 16.024 6.286  10.234 6.054  -0.346 -1.201 H27 OVL 78 
OVL H28 H28 H 0 1 N N N 16.768 7.628  12.154 4.567  1.337  -1.909 H28 OVL 79 
OVL H30 H30 H 0 1 N N N 19.103 2.156  6.582  -2.920 -4.869 -4.366 H30 OVL 80 
OVL H31 H31 H 0 1 N N N 17.544 2.311  7.044  -4.370 -4.462 -5.110 H31 OVL 81 
OVL H32 H32 H 0 1 N N N 22.323 14.839 10.868 -5.165 3.790  2.224  H32 OVL 82 
OVL H33 H33 H 0 1 N N N 20.990 14.130 10.246 -3.881 2.842  2.749  H33 OVL 83 
OVL H34 H34 H 0 1 N N N 14.934 11.881 8.664  -3.876 -0.735 4.052  H34 OVL 84 
OVL H35 H35 H 0 1 N N N 18.715 9.606  7.545  -4.871 -2.154 2.752  H35 OVL 85 
OVL H36 H36 H 0 1 N N N 20.186 7.792  17.284 4.757  4.251  -1.150 H36 OVL 86 
OVL H37 H37 H 0 1 N N N 19.238 10.078 17.225 3.545  4.981  0.431  H37 OVL 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OVL N39 C38 SING N N 1  
OVL N32 C33 SING Y N 2  
OVL N32 C31 DOUB Y N 3  
OVL C38 C33 DOUB Y N 4  
OVL C38 N37 SING Y N 5  
OVL C33 C34 SING Y N 6  
OVL C31 N30 SING Y N 7  
OVL N37 C36 DOUB Y N 8  
OVL O29 C26 SING N N 9  
OVL C26 C27 SING N N 10 
OVL C26 C25 SING N N 11 
OVL O28 C27 SING N N 12 
OVL C34 N30 SING Y N 13 
OVL C34 N35 DOUB Y N 14 
OVL N30 C25 SING N N 15 
OVL C27 C23 SING N N 16 
OVL C36 N35 SING Y N 17 
OVL C25 O24 SING N N 18 
OVL C05 C06 SING N N 19 
OVL C05 C04 SING N N 20 
OVL O24 C23 SING N N 21 
OVL C23 C22 SING N N 22 
OVL C06 N07 SING N N 23 
OVL C22 N20 SING N N 24 
OVL N07 C08 SING N N 25 
OVL N47 C46 SING N N 26 
OVL C04 N03 SING N N 27 
OVL N03 C02 SING N N 28 
OVL C46 N45 DOUB Y N 29 
OVL C46 C41 SING Y N 30 
OVL C02 C21 SING N N 31 
OVL C02 O01 DOUB N N 32 
OVL C21 N20 SING N N 33 
OVL N20 C19 SING N N 34 
OVL N45 C44 SING Y N 35 
OVL N40 C41 SING Y N 36 
OVL N40 C16 DOUB Y N 37 
OVL C08 N10 SING N N 38 
OVL C08 O09 DOUB N N 39 
OVL C41 C42 DOUB Y N 40 
OVL N10 C11 SING N N 41 
OVL C44 N43 DOUB Y N 42 
OVL C16 C17 SING N N 43 
OVL C16 N15 SING Y N 44 
OVL C17 C18 TRIP N N 45 
OVL C42 N43 SING Y N 46 
OVL C42 N15 SING Y N 47 
OVL C18 C19 SING N N 48 
OVL N15 C14 SING N N 49 
OVL O13 C14 SING N N 50 
OVL O13 C12 SING N N 51 
OVL C14 C48 SING N N 52 
OVL C11 C12 SING N N 53 
OVL C12 C49 SING N N 54 
OVL C48 C49 SING N N 55 
OVL C48 O51 SING N N 56 
OVL C49 O50 SING N N 57 
OVL C21 H1  SING N N 58 
OVL C21 H2  SING N N 59 
OVL C22 H3  SING N N 60 
OVL C22 H4  SING N N 61 
OVL C26 H5  SING N N 62 
OVL C04 H6  SING N N 63 
OVL C04 H7  SING N N 64 
OVL C05 H8  SING N N 65 
OVL C05 H9  SING N N 66 
OVL C06 H10 SING N N 67 
OVL C06 H11 SING N N 68 
OVL C11 H12 SING N N 69 
OVL C11 H13 SING N N 70 
OVL C12 H14 SING N N 71 
OVL C14 H15 SING N N 72 
OVL C19 H16 SING N N 73 
OVL C19 H17 SING N N 74 
OVL C23 H18 SING N N 75 
OVL C25 H19 SING N N 76 
OVL C27 H20 SING N N 77 
OVL C31 H21 SING N N 78 
OVL C36 H22 SING N N 79 
OVL C44 H23 SING N N 80 
OVL C48 H24 SING N N 81 
OVL C49 H25 SING N N 82 
OVL N03 H26 SING N N 83 
OVL N07 H27 SING N N 84 
OVL N10 H28 SING N N 85 
OVL N39 H30 SING N N 86 
OVL N39 H31 SING N N 87 
OVL N47 H32 SING N N 88 
OVL N47 H33 SING N N 89 
OVL O28 H34 SING N N 90 
OVL O29 H35 SING N N 91 
OVL O50 H36 SING N N 92 
OVL O51 H37 SING N N 93 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OVL InChI            InChI                1.06  "InChI=1S/C29H36N14O8/c30-23-17-25(37-10-35-23)42(12-39-17)27-21(47)20(46)14(51-27)8-41-6-1-3-15-40-18-24(31)36-11-38-26(18)43(15)28-22(48)19(45)13(50-28)7-34-29(49)33-5-2-4-32-16(44)9-41/h10-14,19-22,27-28,45-48H,2,4-9H2,(H,32,44)(H2,30,35,37)(H2,31,36,38)(H2,33,34,49)/t13-,14-,19-,20-,21-,22-,27-,28-/m1/s1" 
OVL InChIKey         InChI                1.06  JUVLXNMEOQXWRD-CGZJSAOLSA-N                                                                                                                                                                                                                                                                                            
OVL SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN4CC#Cc5nc6c(N)ncnc6n5[C@@H]7O[C@H](CNC(=O)NCCCNC(=O)C4)[C@@H](O)[C@H]7O)[C@@H](O)[C@H]3O"                                                                                                                                                                                             
OVL SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN4CC#Cc5nc6c(N)ncnc6n5[CH]7O[CH](CNC(=O)NCCCNC(=O)C4)[CH](O)[CH]7O)[CH](O)[CH]3O"                                                                                                                                                                                                         
OVL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CC#Cc5nc6c(ncnc6n5[C@H]7[C@@H]([C@@H]([C@H](O7)CNC(=O)NCCCNC(=O)C4)O)O)N)O)O)N"                                                                                                                                                                                     
OVL SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN4CC#Cc5nc6c(ncnc6n5C7C(C(C(O7)CNC(=O)NCCCNC(=O)C4)O)O)N)O)O)N"                                                                                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           OVL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(1~{R},25~{R},26~{S},27~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-26,27-bis(oxidanyl)-28-oxa-2,4,6,9,14,17,21,23-octazatetracyclo[23.2.1.0^{2,10}.0^{3,8}]octacosa-3(8),4,6,9-tetraen-11-yne-16,22-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OVL "Create component" 2022-09-21 PDBE 
OVL "Initial release"  2023-01-11 RCSB 
OVL "Modify formula"   2023-05-15 PDBE 
# 
