data_PDL
# 
_chem_comp.id                                    PDL 
_chem_comp.name                                  "N-(5'-PHOSPHOPYRIDOXYL)-L-ALANINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H17 N2 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-03-18 
_chem_comp.pdbx_modified_date                    2009-01-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      PP3 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        320.236 
_chem_comp.one_letter_code                       X 
_chem_comp.three_letter_code                     PDL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1L6F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PDL N    N    N 0 1 N N N 24.055 16.136 68.451 1.987  0.826  -0.132 N    PDL 1  
PDL N1   N1   N 0 1 Y N N 24.031 10.791 69.250 -0.127 -3.601 -0.639 N1   PDL 2  
PDL C2   C2   C 0 1 Y N N 25.209 11.452 69.308 1.158  -3.566 -0.344 C2   PDL 3  
PDL C2A  C2A  C 0 1 N N N 26.427 10.656 69.656 2.011  -4.786 -0.580 C2A  PDL 4  
PDL C3   C3   C 0 1 Y N N 25.302 12.832 69.064 1.732  -2.418 0.182  C3   PDL 5  
PDL O3A  O3A  O 0 1 N N N 26.500 13.490 69.295 3.057  -2.387 0.485  O3A  PDL 6  
PDL C4   C4   C 0 1 Y N N 24.181 13.539 68.566 0.933  -1.299 0.395  C4   PDL 7  
PDL C4A  C4A  C 0 1 N N N 24.581 14.888 67.956 1.515  -0.031 0.964  C4A  PDL 8  
PDL C5   C5   C 0 1 Y N N 22.870 12.866 68.577 -0.413 -1.381 0.076  C5   PDL 9  
PDL C5A  C5A  C 0 1 N N N 21.534 13.498 68.229 -1.320 -0.197 0.287  C5A  PDL 10 
PDL OP4  OP4  O 0 1 N N N 21.564 14.090 66.947 -2.646 -0.532 -0.128 OP4  PDL 11 
PDL P    P    P 0 1 N N N 20.296 14.780 66.386 -3.556 0.772  0.125  P    PDL 12 
PDL OP1  OP1  O 0 1 N N N 19.181 13.811 66.283 -3.433 1.193  1.539  OP1  PDL 13 
PDL OP2  OP2  O 0 1 N N N 20.631 15.330 65.029 -3.062 1.966  -0.836 OP2  PDL 14 
PDL OP3  OP3  O 0 1 N N N 19.881 15.883 67.310 -5.094 0.424  -0.199 OP3  PDL 15 
PDL C6   C6   C 0 1 Y N N 22.885 11.486 68.917 -0.911 -2.559 -0.449 C6   PDL 16 
PDL CA   CA   C 0 1 N N S 24.556 17.397 67.847 2.540  2.038  0.488  CA   PDL 17 
PDL CB   CB   C 0 1 N N N 23.808 18.597 68.514 3.996  1.788  0.884  CB   PDL 18 
PDL C    C    C 0 1 N N N 26.082 17.688 68.121 2.475  3.179  -0.495 C    PDL 19 
PDL O    O    O 0 1 N N N 26.520 18.811 67.523 2.015  3.001  -1.598 O    PDL 20 
PDL OXT  OXT  O 0 1 N Y N 26.816 17.033 68.803 2.928  4.393  -0.144 OXT  PDL 21 
PDL H    HN   H 0 1 N N N 24.186 16.176 69.462 1.169  1.112  -0.649 H    PDL 22 
PDL H2A1 1H2A H 0 0 N N N 26.520 9.796  68.953 2.007  -5.410 0.314  H2A1 PDL 23 
PDL H2A2 2H2A H 0 0 N N N 27.399 11.201 69.704 1.610  -5.352 -1.421 H2A2 PDL 24 
PDL H2A3 3H2A H 0 0 N N N 26.256 10.120 70.619 3.032  -4.477 -0.803 H2A3 PDL 25 
PDL HO3  HO3  H 0 1 N N N 26.563 14.423 69.130 3.140  -2.678 1.403  HO3  PDL 26 
PDL H4A1 1H4A H 0 0 N N N 25.694 14.955 67.979 2.352  -0.277 1.618  H4A1 PDL 27 
PDL H4A2 2H4A H 0 0 N N N 24.373 14.841 66.862 0.751  0.496  1.534  H4A2 PDL 28 
PDL H5A1 1H5A H 0 0 N N N 21.211 14.227 69.009 -1.327 0.071  1.344  H5A1 PDL 29 
PDL H5A2 2H5A H 0 0 N N N 20.699 12.766 68.322 -0.958 0.648  -0.299 H5A2 PDL 30 
PDL HOP2 2HOP H 0 0 N N N 19.853 15.753 64.685 -3.158 1.651  -1.745 HOP2 PDL 31 
PDL HOP3 3HOP H 0 0 N N N 19.103 16.306 66.966 -5.603 1.229  -0.035 HOP3 PDL 32 
PDL H6   H6   H 0 1 N N N 21.942 10.915 68.923 -1.959 -2.628 -0.704 H6   PDL 33 
PDL HA   HA   H 0 1 N N N 24.391 17.285 66.750 1.959  2.289  1.375  HA   PDL 34 
PDL HB1  1HB  H 0 1 N N N 23.894 18.591 69.626 4.406  2.688  1.344  HB1  PDL 35 
PDL HB2  2HB  H 0 1 N N N 24.184 19.544 68.061 4.043  0.963  1.595  HB2  PDL 36 
PDL HB3  3HB  H 0 1 N N N 22.699 18.501 68.447 4.577  1.537  -0.003 HB3  PDL 37 
PDL HXT  HXT  H 0 1 N Y N 27.735 17.208 68.968 2.886  5.125  -0.774 HXT  PDL 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PDL N   C4A  SING N N 1  
PDL N   CA   SING N N 2  
PDL N   H    SING N N 3  
PDL N1  C2   DOUB Y N 4  
PDL N1  C6   SING Y N 5  
PDL C2  C2A  SING N N 6  
PDL C2  C3   SING Y N 7  
PDL C2A H2A1 SING N N 8  
PDL C2A H2A2 SING N N 9  
PDL C2A H2A3 SING N N 10 
PDL C3  O3A  SING N N 11 
PDL C3  C4   DOUB Y N 12 
PDL O3A HO3  SING N N 13 
PDL C4  C4A  SING N N 14 
PDL C4  C5   SING Y N 15 
PDL C4A H4A1 SING N N 16 
PDL C4A H4A2 SING N N 17 
PDL C5  C5A  SING N N 18 
PDL C5  C6   DOUB Y N 19 
PDL C5A OP4  SING N N 20 
PDL C5A H5A1 SING N N 21 
PDL C5A H5A2 SING N N 22 
PDL OP4 P    SING N N 23 
PDL P   OP1  DOUB N N 24 
PDL P   OP2  SING N N 25 
PDL P   OP3  SING N N 26 
PDL OP2 HOP2 SING N N 27 
PDL OP3 HOP3 SING N N 28 
PDL C6  H6   SING N N 29 
PDL CA  CB   SING N N 30 
PDL CA  C    SING N N 31 
PDL CA  HA   SING N N 32 
PDL CB  HB1  SING N N 33 
PDL CB  HB2  SING N N 34 
PDL CB  HB3  SING N N 35 
PDL C   O    DOUB N N 36 
PDL C   OXT  SING N N 37 
PDL OXT HXT  SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PDL SMILES           ACDLabs              10.04 "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)C"                                                                                                              
PDL InChI            InChI                1.02b "InChI=1/C11H17N2O7P/c1-6-10(14)9(4-13-7(2)11(15)16)8(3-12-6)5-20-21(17,18)19/h3,7,13-14H,4-5H2,1-2H3,(H,15,16)(H2,17,18,19)/t7-/m0/s1/f/h15,17-18H" 
PDL InChIKey         InChI                1.02b WACJCHFWJNNBPR-QVTHEYPJDI                                                                                                                            
PDL SMILES_CANONICAL CACTVS               3.341 "C[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                                        
PDL SMILES           CACTVS               3.341 "C[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                                         
PDL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](C)C(=O)O)O"                                                                                                       
PDL SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)C(=O)O)O"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PDL "SYSTEMATIC NAME" ACDLabs              10.04 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-alanine"             
PDL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PDL "Create component" 2002-03-18 RCSB 
# 
