data_QLL
# 
_chem_comp.id                                    QLL 
_chem_comp.name                                  "2-({[4-(benzyloxy)-1H-indazol-3-yl]methyl}sulfanyl)-5-(methylsulfanyl)pyrimidin-4-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H18 N4 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-08 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.513 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QLL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FX7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QLL C10 C1  C 0 1 Y N N 20.901 -3.584 -22.851 -4.735 -1.493 0.271  C10 QLL 1  
QLL C11 C2  C 0 1 Y N N 18.897 -3.897 -24.122 -3.422 0.538  0.047  C11 QLL 2  
QLL C13 C3  C 0 1 Y N N 13.776 -4.837 -19.843 2.982  -0.925 1.088  C13 QLL 3  
QLL C18 C4  C 0 1 N N N 16.876 -4.224 -25.319 -2.237 2.585  -0.194 C18 QLL 4  
QLL C19 C5  C 0 1 Y N N 15.413 -4.321 -25.099 -0.829 3.118  -0.143 C19 QLL 5  
QLL C20 C6  C 0 1 Y N N 21.022 -3.485 -25.162 -5.811 0.594  -0.214 C20 QLL 6  
QLL C21 C7  C 0 1 Y N N 21.692 -3.436 -23.992 -5.892 -0.759 0.019  C21 QLL 7  
QLL C22 C8  C 0 1 Y N N 19.647 -3.716 -25.248 -4.582 1.243  -0.200 C22 QLL 8  
QLL C23 C9  C 0 1 N N N 10.938 -5.177 -19.716 5.570  -0.304 2.332  C23 QLL 9  
QLL C24 C10 C 0 1 Y N N 14.573 -4.500 -26.187 -0.060 3.153  -1.291 C24 QLL 10 
QLL C25 C11 C 0 1 Y N N 14.813 -4.185 -23.860 -0.307 3.576  1.053  C25 QLL 11 
QLL C26 C12 C 0 1 Y N N 13.429 -4.282 -23.730 0.985  4.065  1.100  C26 QLL 12 
QLL C27 C13 C 0 1 Y N N 13.212 -4.606 -26.054 1.232  3.642  -1.243 C27 QLL 13 
QLL C28 C14 C 0 1 Y N N 12.609 -4.463 -24.817 1.756  4.095  -0.047 C28 QLL 14 
QLL N1  N1  N 0 1 Y N N 15.715 -6.328 -18.590 2.349  -1.528 -1.470 N1  QLL 15 
QLL N2  N2  N 0 1 Y N N 20.175 -3.753 -20.764 -3.112 -2.980 0.705  N2  QLL 16 
QLL C3  C15 C 0 1 Y N N 19.563 -3.808 -22.881 -3.487 -0.845 0.286  C3  QLL 17 
QLL C4  C16 C 0 1 Y N N 19.129 -3.899 -21.577 -2.513 -1.833 0.564  C4  QLL 18 
QLL C5  C17 C 0 1 Y N N 14.453 -6.508 -18.304 3.623  -1.289 -1.189 C5  QLL 19 
QLL C6  C18 C 0 1 Y N N 16.027 -5.411 -19.498 1.426  -1.476 -0.521 C6  QLL 20 
QLL N7  N3  N 0 1 Y N N 21.290 -3.574 -21.537 -4.491 -2.818 0.527  N7  QLL 21 
QLL C8  C19 C 0 1 Y N N 13.468 -5.807 -18.918 3.981  -0.974 0.127  C8  QLL 22 
QLL N9  N4  N 0 1 Y N N 15.072 -4.647 -20.100 1.731  -1.181 0.734  N9  QLL 23 
QLL S12 S1  S 0 1 N N N 17.696 -5.222 -19.902 -0.254 -1.801 -0.941 S12 QLL 24 
QLL C14 C20 C 0 1 N N N 17.761 -4.104 -21.123 -1.029 -1.596 0.682  C14 QLL 25 
QLL O15 O1  O 0 1 N N N 17.554 -4.099 -24.108 -2.224 1.178  0.058  O15 QLL 26 
QLL S16 S2  S 0 1 N N N 11.806 -6.185 -18.535 5.659  -0.647 0.553  S16 QLL 27 
QLL O17 O2  O 0 1 N N N 14.128 -7.395 -17.329 4.565  -1.344 -2.164 O17 QLL 28 
QLL H30 H1  H 0 1 N N N 13.009 -4.259 -20.336 3.221  -0.686 2.114  H30 QLL 29 
QLL H35 H2  H 0 1 N N N 17.089 -3.344 -25.943 -2.843 3.084  0.562  H35 QLL 30 
QLL H34 H3  H 0 1 N N N 17.224 -5.132 -25.834 -2.661 2.773  -1.181 H34 QLL 31 
QLL H36 H4  H 0 1 N N N 21.576 -3.338 -26.077 -6.711 1.158  -0.409 H36 QLL 32 
QLL H37 H5  H 0 1 N N N 22.761 -3.293 -23.942 -6.853 -1.253 0.006  H37 QLL 33 
QLL H38 H6  H 0 1 N N N 19.172 -3.752 -26.217 -4.535 2.306  -0.384 H38 QLL 34 
QLL H39 H7  H 0 1 N N N 9.854  -5.315 -19.590 6.568  -0.085 2.710  H39 QLL 35 
QLL H41 H8  H 0 1 N N N 11.194 -4.120 -19.554 4.919  0.553  2.504  H41 QLL 36 
QLL H40 H9  H 0 1 N N N 11.230 -5.473 -20.735 5.168  -1.175 2.850  H40 QLL 37 
QLL H42 H10 H 0 1 N N N 15.006 -4.558 -27.175 -0.469 2.798  -2.226 H42 QLL 38 
QLL H43 H11 H 0 1 N N N 15.422 -4.002 -22.987 -0.909 3.553  1.949  H43 QLL 39 
QLL H44 H12 H 0 1 N N N 12.988 -4.213 -22.746 1.393  4.424  2.034  H44 QLL 40 
QLL H45 H13 H 0 1 N N N 12.604 -4.803 -26.925 1.832  3.669  -2.141 H45 QLL 41 
QLL H46 H14 H 0 1 N N N 11.535 -4.493 -24.710 2.765  4.477  -0.010 H46 QLL 42 
QLL H29 H15 H 0 1 N N N 22.225 -3.456 -21.202 -5.158 -3.520 0.581  H29 QLL 43 
QLL H32 H16 H 0 1 N N N 17.358 -3.149 -20.756 -0.851 -0.583 1.045  H32 QLL 44 
QLL H31 H17 H 0 1 N N N 17.152 -4.459 -21.967 -0.601 -2.313 1.382  H31 QLL 45 
QLL H33 H18 H 0 1 N N N 14.920 -7.781 -16.974 4.714  -0.501 -2.615 H33 QLL 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QLL N2  C4  DOUB Y N 1  
QLL C3  C4  SING Y N 2  
QLL N1  C5  DOUB Y N 3  
QLL N1  C6  SING Y N 4  
QLL N2  N7  SING Y N 5  
QLL C5  C8  SING Y N 6  
QLL C6  N9  DOUB Y N 7  
QLL C3  C10 DOUB Y N 8  
QLL N7  C10 SING Y N 9  
QLL C3  C11 SING Y N 10 
QLL C6  S12 SING N N 11 
QLL C8  C13 DOUB Y N 12 
QLL N9  C13 SING Y N 13 
QLL C4  C14 SING N N 14 
QLL S12 C14 SING N N 15 
QLL C11 O15 SING N N 16 
QLL C8  S16 SING N N 17 
QLL C5  O17 SING N N 18 
QLL O15 C18 SING N N 19 
QLL C18 C19 SING N N 20 
QLL C10 C21 SING Y N 21 
QLL C20 C21 DOUB Y N 22 
QLL C11 C22 DOUB Y N 23 
QLL C20 C22 SING Y N 24 
QLL S16 C23 SING N N 25 
QLL C19 C24 DOUB Y N 26 
QLL C19 C25 SING Y N 27 
QLL C25 C26 DOUB Y N 28 
QLL C24 C27 SING Y N 29 
QLL C26 C28 SING Y N 30 
QLL C27 C28 DOUB Y N 31 
QLL C13 H30 SING N N 32 
QLL C18 H35 SING N N 33 
QLL C18 H34 SING N N 34 
QLL C20 H36 SING N N 35 
QLL C21 H37 SING N N 36 
QLL C22 H38 SING N N 37 
QLL C23 H39 SING N N 38 
QLL C23 H41 SING N N 39 
QLL C23 H40 SING N N 40 
QLL C24 H42 SING N N 41 
QLL C25 H43 SING N N 42 
QLL C26 H44 SING N N 43 
QLL C27 H45 SING N N 44 
QLL C28 H46 SING N N 45 
QLL N7  H29 SING N N 46 
QLL C14 H32 SING N N 47 
QLL C14 H31 SING N N 48 
QLL O17 H33 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QLL SMILES           ACDLabs              12.01 "Oc1nc(ncc1SC)SCc1n[NH]c2cccc(OCc3ccccc3)c21"                                                                                                            
QLL InChI            InChI                1.06  "InChI=1S/C20H18N4O2S2/c1-27-17-10-21-20(22-19(17)25)28-12-15-18-14(23-24-15)8-5-9-16(18)26-11-13-6-3-2-4-7-13/h2-10H,11-12H2,1H3,(H,23,24)(H,21,22,25)" 
QLL InChIKey         InChI                1.06  WPFAYHFCRNQLGD-UHFFFAOYSA-N                                                                                                                              
QLL SMILES_CANONICAL CACTVS               3.385 "CSc1cnc(SCc2n[nH]c3cccc(OCc4ccccc4)c23)nc1O"                                                                                                            
QLL SMILES           CACTVS               3.385 "CSc1cnc(SCc2n[nH]c3cccc(OCc4ccccc4)c23)nc1O"                                                                                                            
QLL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSc1cnc(nc1O)SCc2c3c(cccc3OCc4ccccc4)[nH]n2"                                                                                                            
QLL SMILES           "OpenEye OEToolkits" 2.0.7 "CSc1cnc(nc1O)SCc2c3c(cccc3OCc4ccccc4)[nH]n2"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
QLL "SYSTEMATIC NAME" ACDLabs              12.01 "2-({[4-(benzyloxy)-1H-indazol-3-yl]methyl}sulfanyl)-5-(methylsulfanyl)pyrimidin-4-ol"  
QLL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-methylsulfanyl-2-[(4-phenylmethoxy-1~{H}-indazol-3-yl)methylsulfanyl]pyrimidin-4-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QLL "Create component" 2023-05-08 RCSB 
QLL "Initial release"  2023-06-14 RCSB 
# 
