data_QQL
# 
_chem_comp.id                                    QQL 
_chem_comp.name                                  "4-methoxy-~{N}-[(2~{S})-4-methyl-1-[[(2~{S})-4-nitro-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]-1~{H}-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H33 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.549 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QQL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BGA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QQL C13 C1  C 0  1 N N S N N N 7.447  -12.577 24.571 -4.584 -2.097 -0.394 C13 QQL 1  
QQL C15 C2  C 0  1 N N N N N N 5.902  -12.144 26.455 -4.707 -3.866 -2.008 C15 QQL 2  
QQL C17 C3  C 0  1 N N N N N N 6.780  -11.143 24.458 -5.695 -3.069 -0.063 C17 QQL 3  
QQL C20 C4  C 0  1 N N N N N N 8.320  -17.227 22.647 -3.311 2.704  -0.906 C20 QQL 4  
QQL C26 C5  C 0  1 Y N N N N N 13.136 -13.301 28.931 4.429  -0.790 0.513  C26 QQL 5  
QQL C28 C6  C 0  1 Y N N N N N 14.134 -12.690 31.374 6.805  -0.624 -0.503 C28 QQL 6  
QQL O01 O1  O 0  1 N N N N N N 11.198 -12.395 25.805 1.887  -1.103 1.800  O01 QQL 7  
QQL C02 C7  C 0  1 N N N N N N 11.848 -13.119 26.563 1.959  -0.415 0.799  C02 QQL 8  
QQL N03 N1  N 0  1 N N N N N N 12.125 -14.411 26.136 0.855  0.184  0.312  N03 QQL 9  
QQL C04 C8  C 0  1 N N S N N N 11.685 -14.933 24.857 -0.433 0.009  0.988  C04 QQL 10 
QQL C05 C9  C 0  1 N N N N N N 12.235 -16.325 24.520 -0.557 1.028  2.122  C05 QQL 11 
QQL C06 C10 C 0  1 N N N N N N 13.750 -16.338 24.234 0.503  0.739  3.187  C06 QQL 12 
QQL C07 C11 C 0  1 N N N N N N 14.064 -15.727 22.869 0.461  1.831  4.258  C07 QQL 13 
QQL C08 C12 C 0  1 N N N N N N 14.318 -17.776 24.364 0.220  -0.619 3.832  C08 QQL 14 
QQL C09 C13 C 0  1 N N N N N N 10.144 -14.970 24.841 -1.552 0.217  0.000  C09 QQL 15 
QQL N10 N2  N 0  1 N N N N N N 9.514  -14.757 23.664 -2.834 0.104  0.401  N10 QQL 16 
QQL C11 C14 C 0  1 N N S N N N 8.015  -14.799 23.440 -3.921 0.306  -0.560 C11 QQL 17 
QQL C12 C15 C 0  1 N N N N N N 7.372  -13.427 23.253 -5.069 -0.654 -0.240 C12 QQL 18 
QQL C14 C16 C 0  1 N N N N N N 6.727  -13.269 25.744 -4.243 -2.399 -1.871 C14 QQL 19 
QQL N16 N3  N 0  1 N N N N N N 5.898  -10.931 25.531 -5.744 -4.046 -0.985 N16 QQL 20 
QQL O18 O2  O 0  1 N N N N N N 7.023  -10.362 23.538 -6.433 -2.981 0.896  O18 QQL 21 
QQL C19 C17 C 0  1 N N N N N N 7.799  -15.790 22.282 -4.422 1.749  -0.466 C19 QQL 22 
QQL N21 N4  N 1  1 N N N N N N 7.454  -18.457 22.122 -3.791 4.086  -0.816 N21 QQL 23 
QQL O22 O3  O 0  1 N N N N N N 7.952  -19.563 21.979 -4.407 4.454  0.168  O22 QQL 24 
QQL O23 O4  O -1 1 N N N N N N 6.299  -18.157 21.892 -3.574 4.866  -1.726 O23 QQL 25 
QQL O24 O5  O 0  1 N N N N N N 9.552  -15.201 25.894 -1.298 0.485  -1.155 O24 QQL 26 
QQL C25 C18 C 0  1 Y N N N N N 12.371 -12.616 27.987 3.250  -0.239 0.120  C25 QQL 27 
QQL C27 C19 C 0  1 Y N N N N N 13.401 -12.500 30.099 5.425  -0.378 -0.403 C27 QQL 28 
QQL O29 O6  O 0  1 N N N N N N 14.752 -13.926 31.636 7.427  -1.409 0.414  O29 QQL 29 
QQL C30 C20 C 0  1 N N N N N N 14.523 -14.536 32.943 8.832  -1.614 0.246  C30 QQL 30 
QQL C31 C21 C 0  1 Y N N N N N 14.169 -11.623 32.293 7.524  -0.064 -1.540 C31 QQL 31 
QQL C32 C22 C 0  1 Y N N N N N 13.496 -10.364 31.995 6.892  0.739  -2.479 C32 QQL 32 
QQL C33 C23 C 0  1 Y N N N N N 12.790 -10.171 30.791 5.541  0.990  -2.396 C33 QQL 33 
QQL C34 C24 C 0  1 Y N N N N N 12.741 -11.249 29.823 4.792  0.438  -1.360 C34 QQL 34 
QQL N35 N5  N 0  1 Y N N N N N 12.126 -11.345 28.542 3.461  0.515  -1.020 N35 QQL 35 
QQL H1  H1  H 0  1 N N N N N N 8.506  -12.443 24.837 -3.717 -2.277 0.242  H1  QQL 36 
QQL H2  H2  H 0  1 N N N N N N 6.370  -11.884 27.416 -5.122 -4.040 -3.001 H2  QQL 37 
QQL H3  H3  H 0  1 N N N N N N 4.872  -12.487 26.631 -3.873 -4.544 -1.825 H3  QQL 38 
QQL H4  H4  H 0  1 N N N N N N 8.366  -17.296 23.744 -2.445 2.578  -0.256 H4  QQL 39 
QQL H5  H5  H 0  1 N N N N N N 9.333  -17.330 22.230 -3.029 2.484  -1.935 H5  QQL 40 
QQL H6  H6  H 0  1 N N N N N N 13.489 -14.314 28.802 4.580  -1.426 1.373  H6  QQL 41 
QQL H7  H7  H 0  1 N N N N N N 12.653 -15.009 26.739 0.913  0.732  -0.486 H7  QQL 42 
QQL H8  H8  H 0  1 N N N N N N 12.010 -14.244 24.063 -0.493 -1.000 1.398  H8  QQL 43 
QQL H9  H9  H 0  1 N N N N N N 11.710 -16.700 23.629 -0.408 2.033  1.725  H9  QQL 44 
QQL H10 H10 H 0  1 N N N N N N 12.036 -16.993 25.371 -1.549 0.957  2.568  H10 QQL 45 
QQL H11 H11 H 0  1 N N N N N N 14.239 -15.718 25.000 1.489  0.722  2.723  H11 QQL 46 
QQL H12 H12 H 0  1 N N N N N N 13.646 -14.711 22.817 1.216  1.624  5.017  H12 QQL 47 
QQL H13 H13 H 0  1 N N N N N N 15.154 -15.682 22.729 0.663  2.798  3.799  H13 QQL 48 
QQL H14 H14 H 0  1 N N N N N N 13.618 -16.348 22.078 -0.525 1.847  4.722  H14 QQL 49 
QQL H15 H15 H 0  1 N N N N N N 14.072 -18.180 25.357 0.249  -1.397 3.069  H15 QQL 50 
QQL H16 H16 H 0  1 N N N N N N 13.875 -18.417 23.588 0.974  -0.826 4.590  H16 QQL 51 
QQL H17 H17 H 0  1 N N N N N N 15.411 -17.751 24.239 -0.767 -0.603 4.295  H17 QQL 52 
QQL H18 H18 H 0  1 N N N N N N 10.088 -14.554 22.871 -3.036 -0.111 1.325  H18 QQL 53 
QQL H19 H19 H 0  1 N N N N N N 7.564  -15.249 24.337 -3.556 0.113  -1.568 H19 QQL 54 
QQL H20 H20 H 0  1 N N N N N N 7.899  -12.891 22.450 -5.896 -0.473 -0.927 H20 QQL 55 
QQL H21 H21 H 0  1 N N N N N N 6.317  -13.561 22.973 -5.405 -0.490 0.784  H21 QQL 56 
QQL H22 H22 H 0  1 N N N N N N 6.058  -14.059 25.372 -4.805 -1.748 -2.542 H22 QQL 57 
QQL H23 H23 H 0  1 N N N N N N 7.459  -13.706 26.439 -3.172 -2.310 -2.050 H23 QQL 58 
QQL H24 H24 H 0  1 N N N N N N 5.349  -10.107 25.668 -6.383 -4.776 -0.976 H24 QQL 59 
QQL H25 H25 H 0  1 N N N N N N 8.341  -15.428 21.396 -4.705 1.970  0.563  H25 QQL 60 
QQL H26 H26 H 0  1 N N N N N N 6.724  -15.847 22.056 -5.289 1.876  -1.116 H26 QQL 61 
QQL H27 H27 H 0  1 N N N N N N 15.065 -15.491 33.003 9.346  -0.654 0.285  H27 QQL 62 
QQL H28 H28 H 0  1 N N N N N N 14.884 -13.860 33.732 9.202  -2.258 1.044  H28 QQL 63 
QQL H29 H29 H 0  1 N N N N N N 13.447 -14.717 33.080 9.017  -2.087 -0.718 H29 QQL 64 
QQL H30 H30 H 0  1 N N N N N N 14.699 -11.738 33.227 8.585  -0.250 -1.620 H30 QQL 65 
QQL H31 H31 H 0  1 N N N N N N 13.540 -9.560  32.715 7.467  1.171  -3.285 H31 QQL 66 
QQL H32 H32 H 0  1 N N N N N N 12.292 -9.233  30.592 5.062  1.616  -3.134 H32 QQL 67 
QQL H33 H33 H 0  1 N N N N N N 11.599 -10.618 28.102 2.782  1.012  -1.502 H33 QQL 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QQL O23 N21 SING N N 1  
QQL O22 N21 DOUB N N 2  
QQL N21 C20 SING N N 3  
QQL C19 C20 SING N N 4  
QQL C19 C11 SING N N 5  
QQL C07 C06 SING N N 6  
QQL C12 C11 SING N N 7  
QQL C12 C13 SING N N 8  
QQL C11 N10 SING N N 9  
QQL O18 C17 DOUB N N 10 
QQL N10 C09 SING N N 11 
QQL C06 C08 SING N N 12 
QQL C06 C05 SING N N 13 
QQL C17 C13 SING N N 14 
QQL C17 N16 SING N N 15 
QQL C05 C04 SING N N 16 
QQL C13 C14 SING N N 17 
QQL C09 C04 SING N N 18 
QQL C09 O24 DOUB N N 19 
QQL C04 N03 SING N N 20 
QQL N16 C15 SING N N 21 
QQL C14 C15 SING N N 22 
QQL O01 C02 DOUB N N 23 
QQL N03 C02 SING N N 24 
QQL C02 C25 SING N N 25 
QQL C25 N35 SING Y N 26 
QQL C25 C26 DOUB Y N 27 
QQL N35 C34 SING Y N 28 
QQL C26 C27 SING Y N 29 
QQL C34 C27 DOUB Y N 30 
QQL C34 C33 SING Y N 31 
QQL C27 C28 SING Y N 32 
QQL C33 C32 DOUB Y N 33 
QQL C28 O29 SING N N 34 
QQL C28 C31 DOUB Y N 35 
QQL O29 C30 SING N N 36 
QQL C32 C31 SING Y N 37 
QQL C13 H1  SING N N 38 
QQL C15 H2  SING N N 39 
QQL C15 H3  SING N N 40 
QQL C20 H4  SING N N 41 
QQL C20 H5  SING N N 42 
QQL C26 H6  SING N N 43 
QQL N03 H7  SING N N 44 
QQL C04 H8  SING N N 45 
QQL C05 H9  SING N N 46 
QQL C05 H10 SING N N 47 
QQL C06 H11 SING N N 48 
QQL C07 H12 SING N N 49 
QQL C07 H13 SING N N 50 
QQL C07 H14 SING N N 51 
QQL C08 H15 SING N N 52 
QQL C08 H16 SING N N 53 
QQL C08 H17 SING N N 54 
QQL N10 H18 SING N N 55 
QQL C11 H19 SING N N 56 
QQL C12 H20 SING N N 57 
QQL C12 H21 SING N N 58 
QQL C14 H22 SING N N 59 
QQL C14 H23 SING N N 60 
QQL N16 H24 SING N N 61 
QQL C19 H25 SING N N 62 
QQL C19 H26 SING N N 63 
QQL C30 H27 SING N N 64 
QQL C30 H28 SING N N 65 
QQL C30 H29 SING N N 66 
QQL C31 H30 SING N N 67 
QQL C32 H31 SING N N 68 
QQL C33 H32 SING N N 69 
QQL N35 H33 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QQL InChI            InChI                1.06  "InChI=1S/C24H33N5O6/c1-14(2)11-19(28-24(32)20-13-17-18(27-20)5-4-6-21(17)35-3)23(31)26-16(8-10-29(33)34)12-15-7-9-25-22(15)30/h4-6,13-16,19,27H,7-12H2,1-3H3,(H,25,30)(H,26,31)(H,28,32)/t15-,16+,19-/m0/s1" 
QQL InChIKey         InChI                1.06  FFTZSDWTZYJKTH-FCEWJHQRSA-N                                                                                                                                                                                   
QQL SMILES_CANONICAL CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CC[N+]([O-])=O)C[C@@H]3CCNC3=O"                                                                                                                          
QQL SMILES           CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](CC[N+]([O-])=O)C[CH]3CCNC3=O"                                                                                                                               
QQL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@H](CC[N+](=O)[O-])C[C@@H]1CCNC1=O)NC(=O)c2cc3c([nH]2)cccc3OC"                                                                                                                          
QQL SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC[N+](=O)[O-])CC1CCNC1=O)NC(=O)c2cc3c([nH]2)cccc3OC"                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           QQL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-methoxy-~{N}-[(2~{S})-4-methyl-1-[[(2~{S})-4-nitro-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QQL "Create component" 2022-11-11 PDBE 
QQL "Modify formula"   2023-05-15 PDBE 
QQL "Initial release"  2023-11-08 RCSB 
QQL "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            QQL 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
