data_RML
#

_chem_comp.id                                   RML
_chem_comp.name                                 "(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C40 H26 N12 Ru"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Lambda-[Ru(1,4,5,8-tetraazaphenanthrene)2(11,12-dimethyl-dipyridophenazine)]2+"
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2012-03-07
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       775.785
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RML
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       4DX4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RML  C53  C53  C   0  1  N  N  N   8.288  -23.580  17.787  ?  ?  ?  C53  RML   1  
RML  C17  C17  C   0  1  Y  N  N   7.540  -24.595  16.925  ?  ?  ?  C17  RML   2  
RML  C18  C18  C   0  1  Y  N  N   8.107  -25.795  16.504  ?  ?  ?  C18  RML   3  
RML  C52  C52  C   0  1  N  N  N   9.547  -26.207  16.867  ?  ?  ?  C52  RML   4  
RML  C14  C14  C   0  1  Y  N  N   7.410  -26.732  15.742  ?  ?  ?  C14  RML   5  
RML  C16  C16  C   0  1  Y  N  N   6.244  -24.197  16.578  ?  ?  ?  C16  RML   6  
RML  C15  C15  C   0  1  Y  N  N   5.576  -25.119  15.776  ?  ?  ?  C15  RML   7  
RML  N3   N3   N   0  1  Y  N  N   4.320  -24.751  15.394  ?  ?  ?  N3   RML   8  
RML  C13  C13  C   0  1  Y  N  N   6.119  -26.318  15.335  ?  ?  ?  C13  RML   9  
RML  N4   N4   N   0  1  Y  N  N   5.416  -27.179  14.560  ?  ?  ?  N4   RML  10  
RML  C7   C7   C   0  1  Y  N  N   4.118  -26.856  14.223  ?  ?  ?  C7   RML  11  
RML  C6   C6   C   0  1  Y  N  N   3.572  -25.613  14.629  ?  ?  ?  C6   RML  12  
RML  C5   C5   C   0  1  Y  N  N   2.208  -25.288  14.263  ?  ?  ?  C5   RML  13  
RML  C4   C4   C   0  1  Y  N  N   1.559  -24.094  14.597  ?  ?  ?  C4   RML  14  
RML  C3   C3   C   0  1  Y  N  N   0.249  -23.862  14.167  ?  ?  ?  C3   RML  15  
RML  C2   C2   C   0  1  Y  N  N  -0.372  -24.818  13.412  ?  ?  ?  C2   RML  16  
RML  C8   C8   C   0  1  Y  N  N   3.379  -27.787  13.415  ?  ?  ?  C8   RML  17  
RML  C10  C10  C   0  1  Y  N  N   2.041  -27.424  13.002  ?  ?  ?  C10  RML  18  
RML  C1   C1   C   0  1  Y  N  N   1.473  -26.183  13.417  ?  ?  ?  C1   RML  19  
RML  N2   N2   N   0  1  Y  N  N   0.133  -25.960  13.129  ?  ?  ?  N2   RML  20  
RML  N1   N1   N   0  1  Y  N  N   1.297  -28.154  12.123  ?  ?  ?  N1   RML  21  
RML  C12  C12  C   0  1  Y  N  N   1.781  -29.388  11.790  ?  ?  ?  C12  RML  22  
RML  C11  C11  C   0  1  Y  N  N   3.125  -29.785  12.154  ?  ?  ?  C11  RML  23  
RML  C9   C9   C   0  1  Y  N  N   3.899  -28.983  12.954  ?  ?  ?  C9   RML  24  
RML  RU   RU   RU  2  0  N  N  N  -0.575  -27.439  11.913  ?  ?  ?  RU   RML  25  
RML  N8   N8   N   0  1  Y  N  N  -1.170  -28.908  10.626  ?  ?  ?  N8   RML  26  
RML  C28  C28  C   0  1  Y  N  N  -1.611  -30.138  10.756  ?  ?  ?  C28  RML  27  
RML  C27  C27  C   0  1  Y  N  N  -1.897  -30.943   9.605  ?  ?  ?  C27  RML  28  
RML  N7   N7   N   0  1  Y  N  N  -1.573  -30.562   8.378  ?  ?  ?  N7   RML  29  
RML  C26  C26  C   0  1  Y  N  N  -0.815  -28.519   9.303  ?  ?  ?  C26  RML  30  
RML  C25  C25  C   0  1  Y  N  N  -1.070  -29.360   8.161  ?  ?  ?  C25  RML  31  
RML  C24  C24  C   0  1  Y  N  N  -0.666  -28.874   6.864  ?  ?  ?  C24  RML  32  
RML  C23  C23  C   0  1  Y  N  N  -0.090  -27.617   6.689  ?  ?  ?  C23  RML  33  
RML  C22  C22  C   0  1  Y  N  N   0.095  -26.711   7.773  ?  ?  ?  C22  RML  34  
RML  N6   N6   N   0  1  Y  N  N   0.558  -25.506   7.715  ?  ?  ?  N6   RML  35  
RML  C19  C19  C   0  1  Y  N  N  -0.250  -27.214   9.125  ?  ?  ?  C19  RML  36  
RML  N5   N5   N   0  1  Y  N  N   0.021  -26.479  10.244  ?  ?  ?  N5   RML  37  
RML  C20  C20  C   0  1  Y  N  N   0.415  -25.206  10.044  ?  ?  ?  C20  RML  38  
RML  C21  C21  C   0  1  Y  N  N   0.804  -24.728   8.750  ?  ?  ?  C21  RML  39  
RML  N12  N12  N   0  1  Y  N  N  -2.478  -26.728  11.822  ?  ?  ?  N12  RML  40  
RML  C38  C38  C   0  1  Y  N  N  -3.063  -25.831  11.111  ?  ?  ?  C38  RML  41  
RML  C37  C37  C   0  1  Y  N  N  -4.450  -25.550  11.271  ?  ?  ?  C37  RML  42  
RML  N11  N11  N   0  1  Y  N  N  -5.195  -26.158  12.219  ?  ?  ?  N11  RML  43  
RML  C36  C36  C   0  1  Y  N  N  -3.188  -27.274  12.818  ?  ?  ?  C36  RML  44  
RML  C29  C29  C   0  1  Y  N  N  -2.576  -28.252  13.667  ?  ?  ?  C29  RML  45  
RML  N9   N9   N   0  1  Y  N  N  -1.243  -28.427  13.490  ?  ?  ?  N9   RML  46  
RML  C30  C30  C   0  1  Y  N  N  -0.729  -29.346  14.231  ?  ?  ?  C30  RML  47  
RML  C31  C31  C   0  1  Y  N  N  -1.470  -30.027  15.298  ?  ?  ?  C31  RML  48  
RML  C35  C35  C   0  1  Y  N  N  -4.582  -27.049  13.023  ?  ?  ?  C35  RML  49  
RML  C34  C34  C   0  1  Y  N  N  -5.291  -27.771  14.016  ?  ?  ?  C34  RML  50  
RML  C33  C33  C   0  1  Y  N  N  -4.698  -28.644  14.892  ?  ?  ?  C33  RML  51  
RML  C32  C32  C   0  1  Y  N  N  -3.314  -28.909  14.696  ?  ?  ?  C32  RML  52  
RML  N10  N10  N   0  1  Y  N  N  -2.778  -29.789  15.503  ?  ?  ?  N10  RML  53  
RML  H1   H1   H   0  1  N  N  N   8.830  -22.876  17.138  ?  ?  ?  H1   RML  54  
RML  H2   H2   H   0  1  N  N  N   7.569  -23.026  18.408  ?  ?  ?  H2   RML  55  
RML  H3   H3   H   0  1  N  N  N   9.004  -24.107  18.435  ?  ?  ?  H3   RML  56  
RML  H4   H4   H   0  1  N  N  N  10.238  -25.850  16.090  ?  ?  ?  H4   RML  57  
RML  H5   H5   H   0  1  N  N  N   9.822  -25.763  17.835  ?  ?  ?  H5   RML  58  
RML  H6   H6   H   0  1  N  N  N   9.608  -27.303  16.936  ?  ?  ?  H6   RML  59  
RML  H7   H7   H   0  1  N  N  N   7.822  -27.696  15.483  ?  ?  ?  H7   RML  60  
RML  H8   H8   H   0  1  N  N  N   5.804  -23.265  16.901  ?  ?  ?  H8   RML  61  
RML  H9   H9   H   0  1  N  N  N   2.071  -23.350  15.189  ?  ?  ?  H9   RML  62  
RML  H10  H10  H   0  1  N  N  N  -0.262  -22.946  14.426  ?  ?  ?  H10  RML  63  
RML  H11  H11  H   0  1  N  N  N  -1.356  -24.594  13.028  ?  ?  ?  H11  RML  64  
RML  H12  H12  H   0  1  N  N  N   1.151  -30.077  11.247  ?  ?  ?  H12  RML  65  
RML  H13  H13  H   0  1  N  N  N   3.522  -30.722  11.792  ?  ?  ?  H13  RML  66  
RML  H14  H14  H   0  1  N  N  N   4.902  -29.282  13.221  ?  ?  ?  H14  RML  67  
RML  H15  H15  H   0  1  N  N  N  -1.760  -30.549  11.744  ?  ?  ?  H15  RML  68  
RML  H16  H16  H   0  1  N  N  N  -2.393  -31.892   9.743  ?  ?  ?  H16  RML  69  
RML  H17  H17  H   0  1  N  N  N  -0.815  -29.505   6.000  ?  ?  ?  H17  RML  70  
RML  H18  H18  H   0  1  N  N  N   0.226  -27.320   5.700  ?  ?  ?  H18  RML  71  
RML  H19  H19  H   0  1  N  N  N   0.438  -24.526  10.883  ?  ?  ?  H19  RML  72  
RML  H20  H20  H   0  1  N  N  N   1.281  -23.767   8.628  ?  ?  ?  H20  RML  73  
RML  H21  H21  H   0  1  N  N  N  -2.492  -25.280  10.378  ?  ?  ?  H21  RML  74  
RML  H22  H22  H   0  1  N  N  N  -4.919  -24.831  10.616  ?  ?  ?  H22  RML  75  
RML  H23  H23  H   0  1  N  N  N   0.299  -29.629  14.058  ?  ?  ?  H23  RML  76  
RML  H24  H24  H   0  1  N  N  N  -0.955  -30.734  15.932  ?  ?  ?  H24  RML  77  
RML  H25  H25  H   0  1  N  N  N  -6.359  -27.625  14.087  ?  ?  ?  H25  RML  78  
RML  H26  H26  H   0  1  N  N  N  -5.255  -29.108  15.692  ?  ?  ?  H26  RML  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RML  C23  C24  DOUB  Y  N   1  
RML  C23  C22  SING  Y  N   2  
RML  C24  C25  SING  Y  N   3  
RML  N6   C22  DOUB  Y  N   4  
RML  N6   C21  SING  Y  N   5  
RML  C22  C19  SING  Y  N   6  
RML  C25  N7   DOUB  Y  N   7  
RML  C25  C26  SING  Y  N   8  
RML  N7   C27  SING  Y  N   9  
RML  C21  C20  DOUB  Y  N  10  
RML  C19  C26  SING  Y  N  11  
RML  C19  N5   DOUB  Y  N  12  
RML  C26  N8   DOUB  Y  N  13  
RML  C27  C28  DOUB  Y  N  14  
RML  C20  N5   SING  Y  N  15  
RML  N5   RU   SING  N  N  16  
RML  N8   C28  SING  Y  N  17  
RML  N8   RU   SING  N  N  18  
RML  C38  C37  DOUB  Y  N  19  
RML  C38  N12  SING  Y  N  20  
RML  C37  N11  SING  Y  N  21  
RML  C12  N1   DOUB  Y  N  22  
RML  C12  C11  SING  Y  N  23  
RML  N12  RU   SING  N  N  24  
RML  N12  C36  DOUB  Y  N  25  
RML  RU   N1   SING  N  N  26  
RML  RU   N2   SING  N  N  27  
RML  RU   N9   SING  N  N  28  
RML  N1   C10  SING  Y  N  29  
RML  C11  C9   DOUB  Y  N  30  
RML  N11  C35  DOUB  Y  N  31  
RML  C36  C35  SING  Y  N  32  
RML  C36  C29  SING  Y  N  33  
RML  C9   C8   SING  Y  N  34  
RML  C10  C8   DOUB  Y  N  35  
RML  C10  C1   SING  Y  N  36  
RML  C35  C34  SING  Y  N  37  
RML  N2   C2   DOUB  Y  N  38  
RML  N2   C1   SING  Y  N  39  
RML  C2   C3   SING  Y  N  40  
RML  C8   C7   SING  Y  N  41  
RML  C1   C5   DOUB  Y  N  42  
RML  N9   C29  DOUB  Y  N  43  
RML  N9   C30  SING  Y  N  44  
RML  C29  C32  SING  Y  N  45  
RML  C34  C33  DOUB  Y  N  46  
RML  C3   C4   DOUB  Y  N  47  
RML  C7   N4   DOUB  Y  N  48  
RML  C7   C6   SING  Y  N  49  
RML  C30  C31  DOUB  Y  N  50  
RML  C5   C4   SING  Y  N  51  
RML  C5   C6   SING  Y  N  52  
RML  N4   C13  SING  Y  N  53  
RML  C6   N3   DOUB  Y  N  54  
RML  C32  C33  SING  Y  N  55  
RML  C32  N10  DOUB  Y  N  56  
RML  C31  N10  SING  Y  N  57  
RML  C13  C14  DOUB  Y  N  58  
RML  C13  C15  SING  Y  N  59  
RML  N3   C15  SING  Y  N  60  
RML  C14  C18  SING  Y  N  61  
RML  C15  C16  DOUB  Y  N  62  
RML  C18  C52  SING  N  N  63  
RML  C18  C17  DOUB  Y  N  64  
RML  C16  C17  SING  Y  N  65  
RML  C17  C53  SING  N  N  66  
RML  C53  H1   SING  N  N  67  
RML  C53  H2   SING  N  N  68  
RML  C53  H3   SING  N  N  69  
RML  C52  H4   SING  N  N  70  
RML  C52  H5   SING  N  N  71  
RML  C52  H6   SING  N  N  72  
RML  C14  H7   SING  N  N  73  
RML  C16  H8   SING  N  N  74  
RML  C4   H9   SING  N  N  75  
RML  C3   H10  SING  N  N  76  
RML  C2   H11  SING  N  N  77  
RML  C12  H12  SING  N  N  78  
RML  C11  H13  SING  N  N  79  
RML  C9   H14  SING  N  N  80  
RML  C28  H15  SING  N  N  81  
RML  C27  H16  SING  N  N  82  
RML  C24  H17  SING  N  N  83  
RML  C23  H18  SING  N  N  84  
RML  C20  H19  SING  N  N  85  
RML  C21  H20  SING  N  N  86  
RML  C38  H21  SING  N  N  87  
RML  C37  H22  SING  N  N  88  
RML  C30  H23  SING  N  N  89  
RML  C31  H24  SING  N  N  90  
RML  C34  H25  SING  N  N  91  
RML  C33  H26  SING  N  N  92  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RML  SMILES            ACDLabs  12.01  "n1c3c6c5c4c(c3nc2c1cc(c(c2)C)C)cccn4[Ru+2]%12%10(n5ccc6)(n7c9c(ncc7)ccc8nccn%10c89)n%13c%14c%11c(nccn%11%12)ccc%14ncc%13"  
RML  InChI             InChI     1.03  "InChI=1S/C20H14N4.2C10H6N4.Ru/c1-11-9-15-16(10-12(11)2)24-20-14-6-4-8-22-18(14)17-13(19(20)23-15)5-3-7-21-17;2*1-2-8-10(14-6-4-12-8)9-7(1)11-3-5-13-9;/h3-10H,1-2H3;2*1-6H;/q;;;+2"  
RML  InChIKey          InChI     1.03  GGHWDMRPXFPGCU-UHFFFAOYSA-N  
RML  SMILES_CANONICAL  CACTVS   3.385  "[Ru++]|1|2|3(|n4cccc5c4c6n|1cccc6c7nc8cc(C)c(C)cc8nc57)(|n9ccnc%10ccc%11nccn|2c%11c9%10)|n%12ccnc%13ccc%14nccn|3c%14c%12%13"  
RML  SMILES            CACTVS   3.385  "[Ru++]|1|2|3(|n4cccc5c4c6n|1cccc6c7nc8cc(C)c(C)cc8nc57)(|n9ccnc%10ccc%11nccn|2c%11c9%10)|n%12ccnc%13ccc%14nccn|3c%14c%12%13"  
#
_pdbx_chem_comp_identifier.comp_id          RML
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RML  "Create component"    2012-03-07  RCSB  
RML  "Initial release"     2013-03-06  RCSB  
RML  "Other modification"  2013-03-21  RCSB  
RML  "Modify synonyms"     2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RML
_pdbx_chem_comp_synonyms.name        "Lambda-[Ru(1,4,5,8-tetraazaphenanthrene)2(11,12-dimethyl-dipyridophenazine)]2+"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
