data_RPL
#

_chem_comp.id                                   RPL
_chem_comp.name                                 "(C8-S)-HYDANTOCIDIN 5'-PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H22 N3 O13 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;[8,9-DIHYDROXY-3-(4-CARBOXY-HYDROXY-HYDROXYMETHYL-AMINO-BUTYL)-2,4-DIOXO-6-OXA-1,3-DIAZA-SPIRO[4.4]NON-7-YLMETHYL]
PHOSPHATE
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       459.300
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RPL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1QF5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RPL  O1P     O1P   O  0  1  N  N  N  25.211  11.844  23.912  -1.247  -1.215  -6.727  O1P     RPL   1  
RPL  O2P     O2P   O  0  1  N  N  N  27.226  12.761  23.016  -2.096   1.086  -7.322  O2P     RPL   2  
RPL  O3P     O3P   O  0  1  N  N  N  25.075  13.557  22.283   0.420   0.420  -7.682  O3P     RPL   3  
RPL  P       P     P  0  1  N  N  N  25.821  13.064  23.420  -0.871   0.216  -6.744  P       RPL   4  
RPL  "O5'"   O5*   O  0  1  N  N  N  25.865  14.142  24.627  -0.529   0.698  -5.246  "O5'"   RPL   5  
RPL  "C5'"   C5*   C  0  1  N  N  N  26.327  13.849  25.929   0.559  -0.106  -4.792  "C5'"   RPL   6  
RPL  "C4'"   C4*   C  0  1  N  N  R  27.168  14.993  26.493   0.936   0.303  -3.366  "C4'"   RPL   7  
RPL  "O4'"   O4*   O  0  1  N  N  N  28.421  15.070  25.825  -0.173   0.089  -2.476  "O4'"   RPL   8  
RPL  "C3'"   C3*   C  0  1  N  N  S  26.551  16.360  26.292   2.070  -0.604  -2.826  "C3'"   RPL   9  
RPL  "O3'"   O3*   O  0  1  N  N  N  27.136  17.312  27.188   3.355  -0.093  -3.190  "O3'"   RPL  10  
RPL  "C2'"   C2*   C  0  1  N  N  R  27.005  16.659  24.840   1.836  -0.491  -1.293  "C2'"   RPL  11  
RPL  "O2'"   O2*   O  0  1  N  N  N  27.032  18.071  24.662   2.478   0.670  -0.763  "O2'"   RPL  12  
RPL  "C1'"   C1*   C  0  1  N  N  S  28.445  16.075  24.746   0.307  -0.359  -1.212  "C1'"   RPL  13  
RPL  N1      N1    N  0  1  N  N  N  28.553  15.453  23.541  -0.302  -1.636  -0.829  N1      RPL  14  
RPL  C2      C2    C  0  1  N  N  N  29.616  15.959  22.824  -0.944  -1.415   0.334  C2      RPL  15  
RPL  O2      O2    O  0  1  N  N  N  29.926  15.583  21.746  -1.564  -2.270   0.938  O2      RPL  16  
RPL  N3      N3    N  0  1  N  N  N  30.237  16.947  23.576  -0.824  -0.149   0.751  N3      RPL  17  
RPL  C4      C4    C  0  1  N  N  N  29.521  17.028  24.752  -0.090   0.589  -0.108  C4      RPL  18  
RPL  O4      O4    O  0  1  N  N  N  29.846  17.834  25.621   0.194   1.763  -0.011  O4      RPL  19  
RPL  C5A     C5A   C  0  1  N  N  N  31.408  17.767  23.214  -1.419   0.372   1.984  C5A     RPL  20  
RPL  C6A     C6A   C  0  1  N  N  N  31.169  18.457  21.862  -0.431   0.202   3.139  C6A     RPL  21  
RPL  C7A     C7A   C  0  1  N  N  N  30.027  19.502  21.947  -1.052   0.746   4.427  C7A     RPL  22  
RPL  C8A     C8A   C  0  1  N  N  S  29.578  19.916  20.510  -0.064   0.576   5.582  C8A     RPL  23  
RPL  C9A     C9A   C  0  1  N  N  N  28.270  20.708  20.548  -0.676   1.112   6.850  C9A     RPL  24  
RPL  OJA     O91A  O  0  1  N  N  N  27.969  21.523  19.517  -1.396   0.303   7.643  OJA     RPL  25  
RPL  OKA     O92A  O  0  1  N  N  N  27.430  20.618  21.597  -0.519   2.271   7.154  OKA     RPL  26  
RPL  NAA     N10A  N  0  1  N  N  N  30.598  20.799  19.817   0.246  -0.849   5.754  NAA     RPL  27  
RPL  OAA     O10A  O  0  1  N  N  N  31.157  21.760  20.765  -0.987  -1.499   6.194  OAA     RPL  28  
RPL  CBA     C11A  C  0  1  N  N  N  31.679  19.999  19.237   1.195  -0.942   6.872  CBA     RPL  29  
RPL  OBA     O11A  O  0  1  N  N  N  32.385  20.720  18.230   2.374  -0.198   6.560  OBA     RPL  30  
RPL  HO2P    HO2P  H  0  0  N  N  N  27.625  13.560  22.693  -2.269   0.766  -8.218  HO2P    RPL  31  
RPL  HO3P    HO3P  H  0  0  N  N  N  25.474  14.356  21.960   0.632   1.363  -7.665  HO3P    RPL  32  
RPL  "H5'1"  1H5*  H  0  0  N  N  N  25.485  13.585  26.611   1.416   0.036  -5.449  "H5'1"  RPL  33  
RPL  "H5'2"  2H5*  H  0  0  N  N  N  26.881  12.881  25.957   0.264  -1.155  -4.802  "H5'2"  RPL  34  
RPL  H4      H4    H  0  1  N  N  N  27.254  14.759  27.579   1.244   1.348  -3.343  H4      RPL  35  
RPL  H3      H3    H  0  1  N  N  N  25.451  16.405  26.468   1.948  -1.631  -3.167  H3      RPL  36  
RPL  "HO3'"  HO3*  H  0  0  N  N  N  26.748  18.170  27.061   3.391  -0.091  -4.156  "HO3'"  RPL  37  
RPL  H2      H2    H  0  1  N  N  N  26.333  16.221  24.065   2.177  -1.390  -0.780  H2      RPL  38  
RPL  "HO2'"  HO2*  H  0  0  N  N  N  27.310  18.254  23.772   3.425   0.566  -0.928  "HO2'"  RPL  39  
RPL  HN1     HN1   H  0  1  N  N  N  27.682  15.501  23.011  -0.253  -2.474  -1.316  HN1     RPL  40  
RPL  H51     1H5   H  0  1  N  N  N  31.670  18.496  24.014  -2.335  -0.175   2.205  H51     RPL  41  
RPL  H52     2H5   H  0  1  N  N  N  32.351  17.173  23.219  -1.650   1.430   1.856  H52     RPL  42  
RPL  H61     1H6   H  0  1  N  N  N  32.107  18.910  21.465   0.484   0.750   2.918  H61     RPL  43  
RPL  H62     2H6   H  0  1  N  N  N  30.980  17.713  21.053  -0.200  -0.855   3.267  H62     RPL  44  
RPL  H71     1H7   H  0  1  N  N  N  29.172  19.139  22.564  -1.968   0.198   4.648  H71     RPL  45  
RPL  H72     2H7   H  0  1  N  N  N  30.311  20.383  22.567  -1.284   1.804   4.299  H72     RPL  46  
RPL  H81     1H8   H  0  1  N  N  N  29.457  18.959  19.950   0.851   1.124   5.361  H81     RPL  47  
RPL  H91     H91   H  0  1  N  N  N  27.156  22.014  19.540  -1.789   0.647   8.457  H91     RPL  48  
RPL  H10     H10   H  0  1  N  N  N  31.795  22.313  20.330  -1.612  -1.438   5.459  H10     RPL  49  
RPL  H111    1H11  H  0  0  N  N  N  32.370  19.617  20.024   1.458  -1.986   7.039  H111    RPL  50  
RPL  H112    2H11  H  0  0  N  N  N  31.301  19.024  18.850   0.735  -0.534   7.773  H112    RPL  51  
RPL  H11     H11   H  0  1  N  N  N  33.086  20.201  17.853   2.968  -0.285   7.318  H11     RPL  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RPL  O1P    P       DOUB  N  N   1  
RPL  O2P    P       SING  N  N   2  
RPL  O2P    HO2P    SING  N  N   3  
RPL  O3P    P       SING  N  N   4  
RPL  O3P    HO3P    SING  N  N   5  
RPL  P      "O5'"   SING  N  N   6  
RPL  "O5'"  "C5'"   SING  N  N   7  
RPL  "C5'"  "C4'"   SING  N  N   8  
RPL  "C5'"  "H5'1"  SING  N  N   9  
RPL  "C5'"  "H5'2"  SING  N  N  10  
RPL  "C4'"  "O4'"   SING  N  N  11  
RPL  "C4'"  "C3'"   SING  N  N  12  
RPL  "C4'"  H4      SING  N  N  13  
RPL  "O4'"  "C1'"   SING  N  N  14  
RPL  "C3'"  "O3'"   SING  N  N  15  
RPL  "C3'"  "C2'"   SING  N  N  16  
RPL  "C3'"  H3      SING  N  N  17  
RPL  "O3'"  "HO3'"  SING  N  N  18  
RPL  "C2'"  "O2'"   SING  N  N  19  
RPL  "C2'"  "C1'"   SING  N  N  20  
RPL  "C2'"  H2      SING  N  N  21  
RPL  "O2'"  "HO2'"  SING  N  N  22  
RPL  "C1'"  N1      SING  N  N  23  
RPL  "C1'"  C4      SING  N  N  24  
RPL  N1     C2      SING  N  N  25  
RPL  N1     HN1     SING  N  N  26  
RPL  C2     O2      DOUB  N  N  27  
RPL  C2     N3      SING  N  N  28  
RPL  N3     C4      SING  N  N  29  
RPL  N3     C5A     SING  N  N  30  
RPL  C4     O4      DOUB  N  N  31  
RPL  C5A    C6A     SING  N  N  32  
RPL  C5A    H51     SING  N  N  33  
RPL  C5A    H52     SING  N  N  34  
RPL  C6A    C7A     SING  N  N  35  
RPL  C6A    H61     SING  N  N  36  
RPL  C6A    H62     SING  N  N  37  
RPL  C7A    C8A     SING  N  N  38  
RPL  C7A    H71     SING  N  N  39  
RPL  C7A    H72     SING  N  N  40  
RPL  C8A    C9A     SING  N  N  41  
RPL  C8A    NAA     SING  N  N  42  
RPL  C8A    H81     SING  N  N  43  
RPL  C9A    OJA     SING  N  N  44  
RPL  C9A    OKA     DOUB  N  N  45  
RPL  OJA    H91     SING  N  N  46  
RPL  NAA    OAA     SING  N  N  47  
RPL  NAA    CBA     SING  N  N  48  
RPL  OAA    H10     SING  N  N  49  
RPL  CBA    OBA     SING  N  N  50  
RPL  CBA    H111    SING  N  N  51  
RPL  CBA    H112    SING  N  N  52  
RPL  OBA    H11     SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RPL  SMILES            ACDLabs               10.04  "O=C(O)C(N(O)CO)CCCN2C(=O)C1(OC(C(O)C1O)COP(=O)(O)O)NC2=O"  
RPL  SMILES_CANONICAL  CACTVS                3.341  "OCN(O)[C@@H](CCCN1C(=O)N[C@@]2(O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O)C(O)=O"  
RPL  SMILES            CACTVS                3.341  "OCN(O)[CH](CCCN1C(=O)N[C]2(O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C1=O)C(O)=O"  
RPL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C(C[C@@H](C(=O)O)[N@](CO)O)CN1C(=O)[C@@]2([C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)NC1=O"  
RPL  SMILES            "OpenEye OEToolkits"  1.5.0  "C(CC(C(=O)O)N(CO)O)CN1C(=O)C2(C(C(C(O2)COP(=O)(O)O)O)O)NC1=O"  
RPL  InChI             InChI                 1.03   "InChI=1S/C13H22N3O13P/c17-5-16(24)6(10(20)21)2-1-3-15-11(22)13(14-12(15)23)9(19)8(18)7(29-13)4-28-30(25,26)27/h6-9,17-19,24H,1-5H2,(H,14,23)(H,20,21)(H2,25,26,27)/t6-,7+,8+,9+,13-/m0/s1"  
RPL  InChIKey          InChI                 1.03   MAXSFYCTFIBEAR-FUIMDIGMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RPL  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-{(5S,7R,8S,9R)-8,9-dihydroxy-2,4-dioxo-7-[(phosphonooxy)methyl]-6-oxa-1,3-diazaspiro[4.4]non-3-yl}-N-hydroxy-N-(hydroxymethyl)-L-norvaline"  
RPL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-5-[(2R,3S,4R,5S)-3,4-dihydroxy-7,9-dioxo-2-(phosphonooxymethyl)-1-oxa-6,8-diazaspiro[4.4]nonan-8-yl]-2-(hydroxy-(hydroxymethyl)amino)pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RPL  "Create component"   1999-07-08  EBI   
RPL  "Modify descriptor"  2011-06-04  RCSB  
RPL  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RPL
_pdbx_chem_comp_synonyms.name        "[8,9-DIHYDROXY-3-(4-CARBOXY-HYDROXY-HYDROXYMETHYL-AMINO-BUTYL)-2,4-DIOXO-6-OXA-1,3-DIAZA-SPIRO[4.4]NON-7-YLMETHYL] PHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
