data_SLL
# 
_chem_comp.id                                    SLL 
_chem_comp.name                                  "(2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C10 H18 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         6-N-succinyl-L-lysine 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-03-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        246.260 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SLL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3LTT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SLL C    C    C 0 1 N N N Y N Y -13.277 3.582 -71.361 -6.032 -0.453 -0.056 C    SLL 1  
SLL N    N    N 0 1 N N N Y Y N -12.305 5.702 -71.919 -4.914 1.564  0.710  N    SLL 2  
SLL O    O    O 0 1 N N N Y N Y -14.081 3.553 -72.304 -6.681 -0.404 0.962  O    SLL 3  
SLL CA   CA   C 0 1 N N S Y N N -12.771 4.895 -70.799 -4.826 0.435  -0.226 CA   SLL 4  
SLL CB   CB   C 0 1 N N N N N N -13.874 5.730 -70.137 -3.557 -0.369 0.062  CB   SLL 5  
SLL CD   CD   C 0 1 N N N N N N -15.440 5.767 -68.125 -1.059 -0.308 0.058  CD   SLL 6  
SLL CE   CE   C 0 1 N N N N N N -15.870 5.111 -66.819 0.169  0.557  -0.235 CE   SLL 7  
SLL CG   CG   C 0 1 N N N N N N -14.382 4.957 -68.872 -2.329 0.496  -0.230 CG   SLL 8  
SLL CK   CK   C 0 1 N N N N N N -18.536 6.494 -64.460 3.846  -0.441 0.137  CK   SLL 9  
SLL CL   CL   C 0 1 N N N N N N -19.813 5.679 -64.653 5.074  0.423  -0.155 CL   SLL 10 
SLL CP   CP   C 0 1 N N N N N N -20.888 6.086 -63.678 6.325  -0.368 0.128  CP   SLL 11 
SLL CX   CX   C 0 1 N N N N N N -17.409 5.588 -64.968 2.595  0.350  -0.147 CX   SLL 12 
SLL OX   OX   O 0 1 N N N N N N -16.956 4.638 -64.302 2.678  1.493  -0.544 OX   SLL 13 
SLL NZ   NZ   N 0 1 N N N N N N -16.930 5.919 -66.169 1.385  -0.212 0.041  NZ   SLL 14 
SLL OP1  OP1  O 0 1 N N N N N N -20.629 6.213 -62.465 6.242  -1.507 0.523  OP1  SLL 15 
SLL OP2  OP2  O 0 1 N N N N N N -22.062 6.290 -64.141 7.530  0.192  -0.059 OP2  SLL 16 
SLL OXT  OXT  O 0 1 N Y N Y N Y -12.808 2.477 -70.772 -6.382 -1.304 -1.034 OXT  SLL 17 
SLL H    H    H 0 1 N N N Y Y N -11.963 6.578 -71.580 -4.946 1.240  1.665  HN   SLL 18 
SLL H2   H2   H 0 1 N Y N Y Y N -11.569 5.219 -72.394 -4.150 2.208  0.572  H2   SLL 19 
SLL HA   HA   H 0 1 N N N Y N N -11.999 4.651 -70.054 -4.794 0.812  -1.248 HA   SLL 20 
SLL HB   HB   H 0 1 N N N N N N -13.474 6.711 -69.840 -3.547 -0.671 1.109  HB   SLL 21 
SLL HBA  HBA  H 0 1 N N N N N N -14.705 5.880 -70.843 -3.536 -1.255 -0.572 HBA  SLL 22 
SLL HD   HD   H 0 1 N N N N N N -16.324 5.864 -68.772 -1.038 -1.194 -0.576 HD   SLL 23 
SLL HDA  HDA  H 0 1 N N N N N N -15.020 6.757 -67.894 -1.050 -0.609 1.105  HDA  SLL 24 
SLL HE   HE   H 0 1 N N N N N N -16.259 4.104 -67.029 0.160  0.859  -1.282 HE   SLL 25 
SLL HEA  HEA  H 0 1 N N N N N N -15.003 5.040 -66.146 0.148  1.444  0.399  HEA  SLL 26 
SLL HG   HG   H 0 1 N N N N N N -14.822 4.001 -69.190 -2.338 0.798  -1.278 HG   SLL 27 
SLL HGA  HGA  H 0 1 N N N N N N -13.531 4.773 -68.199 -2.349 1.382  0.404  HGA  SLL 28 
SLL HK   HK   H 0 1 N N N N N N -18.576 7.432 -65.033 3.866  -1.328 -0.497 HK   SLL 29 
SLL HKA  HKA  H 0 1 N N N N N N -18.388 6.751 -63.401 3.855  -0.743 1.184  HKA  SLL 30 
SLL HL   HL   H 0 1 N N N N N N -20.184 5.841 -65.676 5.064  0.725  -1.203 HL   SLL 31 
SLL HLA  HLA  H 0 1 N N N N N N -19.580 4.615 -64.498 5.053  1.310  0.478  HLA  SLL 32 
SLL HNZ  HNZ  H 0 1 N N N N N N -17.292 6.725 -66.638 1.319  -1.127 0.358  HNZ  SLL 33 
SLL HOP2 HOP2 H 0 0 N N N N N N -22.644 6.537 -63.432 8.303  -0.355 0.137  HOP2 SLL 34 
SLL HXT  HXT  H 0 1 N Y N Y N Y -13.185 1.711 -71.189 -7.161 -1.856 -0.878 HXT  SLL 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SLL C   O    DOUB N N 1  
SLL C   CA   SING N N 2  
SLL C   OXT  SING N N 3  
SLL N   CA   SING N N 4  
SLL CA  CB   SING N N 5  
SLL CB  CG   SING N N 6  
SLL CD  CE   SING N N 7  
SLL CD  CG   SING N N 8  
SLL CE  NZ   SING N N 9  
SLL CK  CL   SING N N 10 
SLL CK  CX   SING N N 11 
SLL CL  CP   SING N N 12 
SLL CP  OP1  DOUB N N 13 
SLL CP  OP2  SING N N 14 
SLL CX  OX   DOUB N N 15 
SLL CX  NZ   SING N N 16 
SLL N   H    SING N N 17 
SLL N   H2   SING N N 18 
SLL CA  HA   SING N N 19 
SLL CB  HB   SING N N 20 
SLL CB  HBA  SING N N 21 
SLL CD  HD   SING N N 22 
SLL CD  HDA  SING N N 23 
SLL CE  HE   SING N N 24 
SLL CE  HEA  SING N N 25 
SLL CG  HG   SING N N 26 
SLL CG  HGA  SING N N 27 
SLL CK  HK   SING N N 28 
SLL CK  HKA  SING N N 29 
SLL CL  HL   SING N N 30 
SLL CL  HLA  SING N N 31 
SLL NZ  HNZ  SING N N 32 
SLL OP2 HOP2 SING N N 33 
SLL OXT HXT  SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SLL SMILES           ACDLabs              12.01 "O=C(O)C(N)CCCCNC(=O)CCC(=O)O"                                                                                      
SLL SMILES_CANONICAL CACTVS               3.370 "N[C@@H](CCCCNC(=O)CCC(O)=O)C(O)=O"                                                                                 
SLL SMILES           CACTVS               3.370 "N[CH](CCCCNC(=O)CCC(O)=O)C(O)=O"                                                                                   
SLL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C(CCNC(=O)CCC(=O)O)C[C@@H](C(=O)O)N"                                                                               
SLL SMILES           "OpenEye OEToolkits" 1.7.0 "C(CCNC(=O)CCC(=O)O)CC(C(=O)O)N"                                                                                    
SLL InChI            InChI                1.03  "InChI=1S/C10H18N2O5/c11-7(10(16)17)3-1-2-6-12-8(13)4-5-9(14)15/h7H,1-6,11H2,(H,12,13)(H,14,15)(H,16,17)/t7-/m0/s1" 
SLL InChIKey         InChI                1.03  ZAFOVBXOMIXMTH-ZETCQYMHSA-N                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SLL "SYSTEMATIC NAME" ACDLabs              12.01 "N~6~-(3-carboxypropanoyl)-L-lysine"                             
SLL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SLL "Create component"  2010-03-04 PDBJ 
SLL "Modify descriptor" 2011-06-04 RCSB 
SLL "Modify synonyms"   2020-06-05 PDBE 
SLL "Modify backbone"   2023-11-03 PDBE 
SLL "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      SLL 
_pdbx_chem_comp_synonyms.name         6-N-succinyl-L-lysine 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            SLL 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               Succinylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     PTM-0438 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
