data_VCL
# 
_chem_comp.id                                    VCL 
_chem_comp.name                                  
;3-(1~{H}-imidazol-4-yl)propyl ~{N}'-[(4-chlorophenyl)methyl]carbamimidothioate
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H17 Cl N4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Clobenpropit 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-14 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        308.830 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VCL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JXX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VCL C15 C1  C  0 1 Y N N N N N 136.645 146.196 110.216 -5.771 -0.475 -0.305 C15 VCL 1  
VCL C16 C2  C  0 1 Y N N N N N 135.610 145.288 110.345 -6.981 -0.035 0.092  C16 VCL 2  
VCL C18 C3  C  0 1 Y N N N N N 136.672 144.745 108.518 -6.878 -2.205 0.356  C18 VCL 3  
VCL CL1 CL1 CL 0 0 N N N N N N 143.663 147.137 104.034 6.753  -1.860 -0.612 CL1 VCL 4  
VCL C01 C4  C  0 1 Y N N N N N 141.689 145.351 107.044 4.450  1.066  0.831  C01 VCL 5  
VCL C02 C5  C  0 1 Y N N N N N 142.008 145.869 105.785 5.545  0.340  0.402  C02 VCL 6  
VCL C03 C6  C  0 1 Y N N N N N 143.239 146.479 105.610 5.378  -0.949 -0.071 C03 VCL 7  
VCL C04 C7  C  0 1 Y N N N N N 144.143 146.578 106.654 4.115  -1.512 -0.114 C04 VCL 8  
VCL C05 C8  C  0 1 Y N N N N N 143.795 146.049 107.903 3.020  -0.785 0.316  C05 VCL 9  
VCL C06 C9  C  0 1 Y N N N N N 142.570 145.424 108.142 3.188  0.503  0.789  C06 VCL 10 
VCL C07 C10 C  0 1 N N N N N N 142.204 144.841 109.529 1.995  1.292  1.263  C07 VCL 11 
VCL N08 N1  N  0 1 N N N N N N 142.931 145.466 110.661 1.502  2.136  0.172  N08 VCL 12 
VCL C09 C11 C  0 1 N N N N N N 142.609 146.617 111.145 0.314  1.931  -0.326 C09 VCL 13 
VCL N10 N2  N  0 1 N N N N N N 143.290 147.192 112.205 -0.106 2.647  -1.423 N10 VCL 14 
VCL S11 S1  S  0 1 N N N N N N 141.193 147.583 110.458 -0.754 0.737  0.408  S11 VCL 15 
VCL C12 C12 C  0 1 N N N N N N 139.568 147.007 111.103 -2.252 1.011  -0.571 C12 VCL 16 
VCL C13 C13 C  0 1 N N N N N N 138.407 147.891 110.674 -3.387 0.146  -0.020 C13 VCL 17 
VCL C14 C14 C  0 1 N N N N N N 137.052 147.321 111.053 -4.653 0.378  -0.847 C14 VCL 18 
VCL N17 N3  N  0 1 Y N N N N N 135.622 144.387 109.292 -7.683 -1.133 0.511  N17 VCL 19 
VCL N19 N4  N  0 1 Y N N N N N 137.311 145.840 109.059 -5.734 -1.804 -0.127 N19 VCL 20 
VCL H1  H1  H  0 1 N N N N N N 134.893 145.282 111.153 -7.329 0.987  0.081  H1  VCL 21 
VCL H2  H2  H  0 1 N N N N N N 136.967 144.245 107.607 -7.135 -3.226 0.599  H2  VCL 22 
VCL H3  H3  H  0 1 N N N N N N 140.729 144.876 107.181 4.580  2.071  1.205  H3  VCL 23 
VCL H4  H4  H  0 1 N N N N N N 141.308 145.795 104.965 6.531  0.780  0.435  H4  VCL 24 
VCL H5  H5  H  0 1 N N N N N N 145.101 147.055 106.508 3.984  -2.518 -0.483 H5  VCL 25 
VCL H6  H6  H  0 1 N N N N N N 144.503 146.128 108.714 2.034  -1.224 0.283  H6  VCL 26 
VCL H7  H7  H  0 1 N N N N N N 141.125 144.985 109.690 1.207  0.607  1.577  H7  VCL 27 
VCL H8  H8  H  0 1 N N N N N N 142.434 143.765 109.523 2.286  1.920  2.105  H8  VCL 28 
VCL H10 H10 H  0 1 N N N N N N 144.062 146.712 112.623 0.482  3.305  -1.826 H10 VCL 29 
VCL H11 H11 H  0 1 N N N N N N 139.386 145.987 110.733 -2.536 2.062  -0.513 H11 VCL 30 
VCL H12 H12 H  0 1 N N N N N N 139.612 146.996 112.202 -2.062 0.743  -1.610 H12 VCL 31 
VCL H13 H13 H  0 1 N N N N N N 138.443 148.010 109.581 -3.103 -0.905 -0.077 H13 VCL 32 
VCL H14 H14 H  0 1 N N N N N N 138.520 148.874 111.154 -3.578 0.414  1.019  H14 VCL 33 
VCL H15 H15 H  0 1 N N N N N N 136.299 148.117 110.958 -4.463 0.109  -1.886 H15 VCL 34 
VCL H16 H16 H  0 1 N N N N N N 137.096 146.981 112.098 -4.937 1.429  -0.790 H16 VCL 35 
VCL H17 H17 H  0 1 N N N N N N 134.987 143.630 109.137 -8.591 -1.139 0.853  H17 VCL 36 
VCL H9  H9  H  0 1 N N N N N N 143.010 148.087 112.553 -0.989 2.495  -1.793 H9  VCL 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VCL CL1 C03 SING N N 1  
VCL C03 C02 DOUB Y N 2  
VCL C03 C04 SING Y N 3  
VCL C02 C01 SING Y N 4  
VCL C04 C05 DOUB Y N 5  
VCL C01 C06 DOUB Y N 6  
VCL C05 C06 SING Y N 7  
VCL C06 C07 SING N N 8  
VCL C18 N19 DOUB Y N 9  
VCL C18 N17 SING Y N 10 
VCL N19 C15 SING Y N 11 
VCL N17 C16 SING Y N 12 
VCL C07 N08 SING N N 13 
VCL C15 C16 DOUB Y N 14 
VCL C15 C14 SING N N 15 
VCL S11 C12 SING N N 16 
VCL S11 C09 SING N N 17 
VCL N08 C09 DOUB N N 18 
VCL C13 C14 SING N N 19 
VCL C13 C12 SING N N 20 
VCL C09 N10 SING N N 21 
VCL C16 H1  SING N N 22 
VCL C18 H2  SING N N 23 
VCL C01 H3  SING N N 24 
VCL C02 H4  SING N N 25 
VCL C04 H5  SING N N 26 
VCL C05 H6  SING N N 27 
VCL C07 H7  SING N N 28 
VCL C07 H8  SING N N 29 
VCL N10 H10 SING N N 30 
VCL C12 H11 SING N N 31 
VCL C12 H12 SING N N 32 
VCL C13 H13 SING N N 33 
VCL C13 H14 SING N N 34 
VCL C14 H15 SING N N 35 
VCL C14 H16 SING N N 36 
VCL N17 H17 SING N N 37 
VCL N10 H9  SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VCL InChI            InChI                1.06  "InChI=1S/C14H17ClN4S/c15-12-5-3-11(4-6-12)8-18-14(16)20-7-1-2-13-9-17-10-19-13/h3-6,9-10H,1-2,7-8H2,(H2,16,18)(H,17,19)" 
VCL InChIKey         InChI                1.06  UCAIEVHKDLMIFL-UHFFFAOYSA-N                                                                                               
VCL SMILES_CANONICAL CACTVS               3.385 "NC(SCCCc1c[nH]cn1)=NCc2ccc(Cl)cc2"                                                                                       
VCL SMILES           CACTVS               3.385 "NC(SCCCc1c[nH]cn1)=NCc2ccc(Cl)cc2"                                                                                       
VCL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C/N=C(/N)\SCCCc2c[nH]cn2)Cl"                                                                                    
VCL SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN=C(N)SCCCc2c[nH]cn2)Cl"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           VCL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;3-(1~{H}-imidazol-4-yl)propyl ~{N}'-[(4-chlorophenyl)methyl]carbamimidothioate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VCL "Create component" 2023-07-14 PDBJ 
VCL "Initial release"  2024-03-20 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      VCL 
_pdbx_chem_comp_synonyms.name         Clobenpropit 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
