data_VML
# 
_chem_comp.id                                    VML 
_chem_comp.name                                  "N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H19 F6 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2023-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        495.417 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VML 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EA8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VML C1  C1  C 0 1 N N N 16.678 20.950 19.974 -1.099 2.249  3.683  C1  VML 1  
VML C10 C2  C 0 1 Y N N 9.888  19.233 18.695 1.237  -2.560 -0.059 C10 VML 2  
VML C11 C3  C 0 1 Y N N 9.577  20.521 19.112 0.574  -3.786 -0.014 C11 VML 3  
VML C13 C4  C 0 1 Y N N 7.473  20.319 18.187 2.534  -4.940 -0.404 C13 VML 4  
VML C14 C5  C 0 1 Y N N 7.718  19.025 17.741 3.273  -3.776 -0.471 C14 VML 5  
VML C15 C6  C 0 1 Y N N 8.964  18.458 18.002 2.628  -2.550 -0.297 C15 VML 6  
VML C16 C7  C 0 1 Y N N 9.229  17.122 17.465 3.381  -1.276 -0.362 C16 VML 7  
VML C17 C8  C 0 1 Y N N 8.335  16.064 17.720 3.369  -0.400 0.723  C17 VML 8  
VML C18 C9  C 0 1 Y N N 8.571  14.813 17.148 4.073  0.785  0.657  C18 VML 9  
VML C19 C10 C 0 1 Y N N 9.682  14.644 16.329 4.789  1.105  -0.482 C19 VML 10 
VML C20 C11 C 0 1 Y N N 10.581 15.687 16.067 4.804  0.240  -1.562 C20 VML 11 
VML C21 C12 C 0 1 Y N N 10.356 16.935 16.646 4.109  -0.951 -1.506 C21 VML 12 
VML C22 C13 C 0 1 N N N 9.885  13.316 15.717 5.555  2.401  -0.548 C22 VML 13 
VML C26 C14 C 0 1 Y N N 13.933 18.116 17.902 -3.009 -0.310 0.446  C26 VML 14 
VML C27 C15 C 0 1 Y N N 14.050 18.788 16.685 -3.655 -1.327 1.123  C27 VML 15 
VML C28 C16 C 0 1 Y N N 14.355 18.135 15.485 -5.005 -1.544 0.920  C28 VML 16 
VML C29 C17 C 0 1 Y N N 14.514 16.743 15.522 -5.709 -0.743 0.040  C29 VML 17 
VML C3  C18 C 0 1 N N N 16.319 18.495 20.062 -1.866 2.675  1.302  C3  VML 18 
VML C30 C19 C 0 1 Y N N 14.363 16.060 16.739 -5.062 0.275  -0.636 C30 VML 19 
VML C31 C20 C 0 1 Y N N 14.083 16.728 17.940 -3.712 0.491  -0.434 C31 VML 20 
VML C32 C21 C 0 1 N N N 14.539 14.583 16.782 -5.830 1.148  -1.596 C32 VML 21 
VML C4  C22 C 0 1 N N N 14.489 20.055 19.399 -1.321 0.431  2.076  C4  VML 22 
VML C6  C23 C 0 1 N N S 13.595 18.855 19.171 -1.538 -0.071 0.672  C6  VML 23 
VML C8  C24 C 0 1 N N N 11.200 18.659 19.033 0.497  -1.297 0.132  C8  VML 24 
VML F23 F1  F 0 1 N N N 9.484  12.285 16.463 6.855  2.199  -0.071 F23 VML 25 
VML F24 F2  F 0 1 N N N 9.163  13.165 14.584 5.610  2.844  -1.874 F24 VML 26 
VML F25 F3  F 0 1 N N N 11.162 13.075 15.405 4.913  3.363  0.239  F25 VML 27 
VML F33 F4  F 0 1 N N N 14.259 13.954 15.622 -5.273 1.037  -2.874 F33 VML 28 
VML F34 F5  F 0 1 N N N 15.821 14.237 17.030 -7.167 0.738  -1.632 F34 VML 29 
VML F35 F6  F 0 1 N N N 13.757 14.011 17.720 -5.761 2.479  -1.171 F35 VML 30 
VML N12 N1  N 0 1 Y N N 8.369  21.096 18.853 1.232  -4.913 -0.185 N12 VML 31 
VML N2  N2  N 0 1 N N N 15.791 19.806 19.765 -1.426 1.747  2.346  N2  VML 32 
VML N7  N3  N 0 1 N N N 12.302 19.434 18.837 -0.804 -1.324 0.482  N7  VML 33 
VML O5  O1  O 0 1 N N N 14.050 21.192 19.363 -1.051 -0.350 2.964  O5  VML 34 
VML O9  O2  O 0 1 N N N 11.187 17.542 19.526 1.062  -0.232 -0.025 O9  VML 35 
VML H1  H1  H 0 1 N N N 17.678 20.592 20.260 -0.794 1.418  4.319  H1  VML 36 
VML H2  H2  H 0 1 N N N 16.750 21.533 19.044 -0.285 2.971  3.612  H2  VML 37 
VML H3  H3  H 0 1 N N N 16.273 21.586 20.775 -1.977 2.733  4.113  H3  VML 38 
VML H4  H4  H 0 1 N N N 10.317 21.085 19.660 -0.491 -3.811 0.163  H4  VML 39 
VML H5  H5  H 0 1 N N N 6.498  20.739 17.990 3.029  -5.890 -0.538 H5  VML 40 
VML H6  H6  H 0 1 N N N 6.961  18.472 17.205 4.336  -3.813 -0.655 H6  VML 41 
VML H7  H7  H 0 1 N N N 7.474  16.219 18.353 2.811  -0.649 1.613  H7  VML 42 
VML H8  H8  H 0 1 N N N 7.900  13.988 17.339 4.065  1.464  1.497  H8  VML 43 
VML H9  H9  H 0 1 N N N 11.435 15.526 15.426 5.364  0.496  -2.450 H9  VML 44 
VML H10 H10 H 0 1 N N N 11.041 17.750 16.467 4.122  -1.625 -2.349 H10 VML 45 
VML H11 H11 H 0 1 N N N 13.899 19.857 16.668 -3.105 -1.953 1.811  H11 VML 46 
VML H12 H12 H 0 1 N N N 14.464 18.685 14.562 -5.510 -2.339 1.449  H12 VML 47 
VML H13 H13 H 0 1 N N N 14.751 16.199 14.620 -6.763 -0.913 -0.119 H13 VML 48 
VML H14 H14 H 0 1 N N N 17.384 18.579 20.326 -2.955 2.691  1.266  H14 VML 49 
VML H15 H15 H 0 1 N N N 15.765 18.060 20.907 -1.495 3.676  1.525  H15 VML 50 
VML H16 H16 H 0 1 N N N 16.210 17.847 19.179 -1.475 2.350  0.338  H16 VML 51 
VML H17 H17 H 0 1 N N N 13.986 16.184 18.868 -3.208 1.288  -0.960 H17 VML 52 
VML H18 H18 H 0 1 N N N 13.559 18.190 20.046 -1.178 0.673  -0.039 H18 VML 53 
VML H19 H19 H 0 1 N N N 12.226 20.364 18.478 -1.255 -2.174 0.608  H19 VML 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VML F24 C22 SING N N 1  
VML F25 C22 SING N N 2  
VML C28 C29 DOUB Y N 3  
VML C28 C27 SING Y N 4  
VML C29 C30 SING Y N 5  
VML F33 C32 SING N N 6  
VML C22 C19 SING N N 7  
VML C22 F23 SING N N 8  
VML C20 C19 DOUB Y N 9  
VML C20 C21 SING Y N 10 
VML C19 C18 SING Y N 11 
VML C21 C16 DOUB Y N 12 
VML C27 C26 DOUB Y N 13 
VML C30 C32 SING N N 14 
VML C30 C31 DOUB Y N 15 
VML C32 F34 SING N N 16 
VML C32 F35 SING N N 17 
VML C18 C17 DOUB Y N 18 
VML C16 C17 SING Y N 19 
VML C16 C15 SING N N 20 
VML C14 C15 DOUB Y N 21 
VML C14 C13 SING Y N 22 
VML C26 C31 SING Y N 23 
VML C26 C6  SING N N 24 
VML C15 C10 SING Y N 25 
VML C13 N12 DOUB Y N 26 
VML C10 C8  SING N N 27 
VML C10 C11 DOUB Y N 28 
VML N7  C8  SING N N 29 
VML N7  C6  SING N N 30 
VML N12 C11 SING Y N 31 
VML C8  O9  DOUB N N 32 
VML C6  C4  SING N N 33 
VML O5  C4  DOUB N N 34 
VML C4  N2  SING N N 35 
VML N2  C1  SING N N 36 
VML N2  C3  SING N N 37 
VML C1  H1  SING N N 38 
VML C1  H2  SING N N 39 
VML C1  H3  SING N N 40 
VML C11 H4  SING N N 41 
VML C13 H5  SING N N 42 
VML C14 H6  SING N N 43 
VML C17 H7  SING N N 44 
VML C18 H8  SING N N 45 
VML C20 H9  SING N N 46 
VML C21 H10 SING N N 47 
VML C27 H11 SING N N 48 
VML C28 H12 SING N N 49 
VML C29 H13 SING N N 50 
VML C3  H14 SING N N 51 
VML C3  H15 SING N N 52 
VML C3  H16 SING N N 53 
VML C31 H17 SING N N 54 
VML C6  H18 SING N N 55 
VML N7  H19 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VML SMILES           ACDLabs              12.01 "O=C(NC(c1cccc(c1)C(F)(F)F)C(=O)N(C)C)c1cnccc1c1ccc(cc1)C(F)(F)F"                                                                                                      
VML InChI            InChI                1.06  "InChI=1S/C24H19F6N3O2/c1-33(2)22(35)20(15-4-3-5-17(12-15)24(28,29)30)32-21(34)19-13-31-11-10-18(19)14-6-8-16(9-7-14)23(25,26)27/h3-13,20H,1-2H3,(H,32,34)/t20-/m0/s1" 
VML InChIKey         InChI                1.06  ZMELGOOSPVFBKG-FQEVSTJZSA-N                                                                                                                                            
VML SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)[C@@H](NC(=O)c1cnccc1c2ccc(cc2)C(F)(F)F)c3cccc(c3)C(F)(F)F"                                                                                                 
VML SMILES           CACTVS               3.385 "CN(C)C(=O)[CH](NC(=O)c1cnccc1c2ccc(cc2)C(F)(F)F)c3cccc(c3)C(F)(F)F"                                                                                                   
VML SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)[C@H](c1cccc(c1)C(F)(F)F)NC(=O)c2cnccc2c3ccc(cc3)C(F)(F)F"                                                                                                  
VML SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C(c1cccc(c1)C(F)(F)F)NC(=O)c2cnccc2c3ccc(cc3)C(F)(F)F"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VML "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide"                 
VML "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-2-(dimethylamino)-2-oxidanylidene-1-[3-(trifluoromethyl)phenyl]ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VML "Create component" 2022-09-02 RCSB 
VML "Initial release"  2023-05-03 RCSB 
# 
