data_WNL
# 
_chem_comp.id                                    WNL 
_chem_comp.name                                  "(6M)-5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H16 N2 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-15 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        276.354 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WNL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G1D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WNL C01 C1  C 0 1 N N N 4.527  6.099 18.175 0.293  -0.077 0.253  C01 WNL 1  
WNL C02 C2  C 0 1 N N N 5.129  7.114 18.884 0.994  -1.234 0.070  C02 WNL 2  
WNL C05 C3  C 0 1 N N N 6.396  5.870 16.613 2.299  1.162  0.100  C05 WNL 3  
WNL C07 C4  C 0 1 N N N 4.509  7.800 20.084 0.284  -2.563 0.051  C07 WNL 4  
WNL C13 C5  C 0 1 Y N N 3.076  4.423 19.229 -1.737 -0.874 1.456  C13 WNL 5  
WNL C15 C6  C 0 1 Y N N 0.692  4.535 18.969 -3.925 -0.182 0.769  C15 WNL 6  
WNL C16 C7  C 0 1 Y N N 0.810  5.705 18.201 -3.373 0.581  -0.251 C16 WNL 7  
WNL C17 C8  C 0 1 Y N N 2.067  6.230 17.948 -2.001 0.612  -0.429 C17 WNL 8  
WNL C19 C9  C 0 1 N N N -0.339 7.343 16.924 -5.588 1.221  -0.834 C19 WNL 9  
WNL C03 C10 C 0 1 N N N 6.450  7.574 18.511 2.393  -1.166 -0.101 C03 WNL 10 
WNL N04 N1  N 0 1 N N N 7.019  6.965 17.366 3.007  0.033  -0.082 N04 WNL 11 
WNL C31 C11 C 0 1 N N N 8.261  7.478 16.857 4.460  0.107  -0.260 C31 WNL 12 
WNL N06 N2  N 0 1 N N N 5.129  5.469 17.030 0.965  1.125  0.266  N06 WNL 13 
WNL C08 C12 C 0 1 N N N 5.031  7.255 21.423 -0.042 -2.947 -1.394 C08 WNL 14 
WNL O09 O1  O 0 1 N N N 7.125  8.515 19.076 3.040  -2.185 -0.266 O09 WNL 15 
WNL S11 S1  S 0 1 N N N 7.087  5.204 15.304 3.109  2.670  0.121  S11 WNL 16 
WNL C12 C13 C 0 1 Y N N 3.187  5.606 18.468 -1.173 -0.114 0.429  C12 WNL 17 
WNL C14 C14 C 0 1 Y N N 1.826  3.891 19.499 -3.107 -0.906 1.618  C14 WNL 18 
WNL O18 O2  O 0 1 N N N -0.391 6.234 17.772 -4.181 1.299  -1.075 O18 WNL 19 
WNL H22 H1  H 0 1 N N N 4.737  8.875 20.030 0.927  -3.325 0.493  H22 WNL 20 
WNL H21 H2  H 0 1 N N N 3.419  7.654 20.047 -0.640 -2.490 0.625  H21 WNL 21 
WNL H29 H3  H 0 1 N N N 3.964  3.933 19.600 -1.101 -1.441 2.120  H29 WNL 22 
WNL H31 H4  H 0 1 N N N -0.288 4.121 19.157 -4.996 -0.204 0.906  H31 WNL 23 
WNL H32 H5  H 0 1 N N N 2.172  7.122 17.348 -1.571 1.205  -1.223 H32 WNL 24 
WNL H35 H6  H 0 1 N N N -1.361 7.655 16.665 -6.116 1.839  -1.560 H35 WNL 25 
WNL H34 H7  H 0 1 N N N 0.179  8.170 17.433 -5.916 0.187  -0.930 H34 WNL 26 
WNL H33 H8  H 0 1 N N N 0.207  7.078 16.007 -5.804 1.579  0.173  H33 WNL 27 
WNL H1  H10 H 0 1 N N N 8.563  6.898 15.972 4.691  0.208  -1.320 H1  WNL 28 
WNL H2  H11 H 0 1 N N N 8.134  8.534 16.577 4.848  0.970  0.281  H2  WNL 29 
WNL H3  H12 H 0 1 N N N 9.037  7.395 17.632 4.920  -0.802 0.127  H3  WNL 30 
WNL H5  H14 H 0 1 N N N 4.641  4.748 16.537 0.472  1.951  0.395  H5  WNL 31 
WNL H25 H15 H 0 1 N N N 4.545  7.791 22.252 -0.684 -2.185 -1.836 H25 WNL 32 
WNL H24 H16 H 0 1 N N N 4.802  6.182 21.496 0.882  -3.020 -1.968 H24 WNL 33 
WNL H23 H17 H 0 1 N N N 6.120  7.402 21.479 -0.555 -3.908 -1.408 H23 WNL 34 
WNL H30 H18 H 0 1 N N N 1.724  3.002 20.103 -3.542 -1.497 2.409  H30 WNL 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WNL C01 C02 DOUB N N 1  
WNL C02 C03 SING N N 2  
WNL C03 N04 SING N N 3  
WNL N04 C05 SING N N 4  
WNL C01 N06 SING N N 5  
WNL C05 N06 SING N N 6  
WNL C02 C07 SING N N 7  
WNL C07 C08 SING N N 8  
WNL C03 O09 DOUB N N 9  
WNL C05 S11 DOUB N N 10 
WNL C01 C12 SING N N 11 
WNL C12 C13 DOUB Y N 12 
WNL C13 C14 SING Y N 13 
WNL C14 C15 DOUB Y N 14 
WNL C15 C16 SING Y N 15 
WNL C12 C17 SING Y N 16 
WNL C16 C17 DOUB Y N 17 
WNL C16 O18 SING N N 18 
WNL O18 C19 SING N N 19 
WNL C07 H22 SING N N 20 
WNL C07 H21 SING N N 21 
WNL C13 H29 SING N N 22 
WNL C15 H31 SING N N 23 
WNL C17 H32 SING N N 24 
WNL C19 H35 SING N N 25 
WNL C19 H34 SING N N 26 
WNL C19 H33 SING N N 27 
WNL C31 H1  SING N N 28 
WNL C31 H2  SING N N 29 
WNL C31 H3  SING N N 30 
WNL N06 H5  SING N N 31 
WNL C08 H25 SING N N 32 
WNL C08 H24 SING N N 33 
WNL C08 H23 SING N N 34 
WNL C14 H30 SING N N 35 
WNL N04 C31 SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WNL SMILES           ACDLabs              12.01 "S=C1NC(c2cccc(OC)c2)=C(CC)C(=O)N1C"                                                                   
WNL InChI            InChI                1.06  "InChI=1S/C14H16N2O2S/c1-4-11-12(15-14(19)16(2)13(11)17)9-6-5-7-10(8-9)18-3/h5-8H,4H2,1-3H3,(H,15,19)" 
WNL InChIKey         InChI                1.06  FCPKQULJMYPFNN-UHFFFAOYSA-N                                                                            
WNL SMILES_CANONICAL CACTVS               3.385 "CCC1=C(NC(=S)N(C)C1=O)c2cccc(OC)c2"                                                                   
WNL SMILES           CACTVS               3.385 "CCC1=C(NC(=S)N(C)C1=O)c2cccc(OC)c2"                                                                   
WNL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1=C(NC(=S)N(C1=O)C)c2cccc(c2)OC"                                                                   
WNL SMILES           "OpenEye OEToolkits" 2.0.7 "CCC1=C(NC(=S)N(C1=O)C)c2cccc(c2)OC"                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WNL "SYSTEMATIC NAME" ACDLabs              12.01 "(6M)-5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one" 
WNL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-1~{H}-pyrimidin-4-one"               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WNL "Create component" 2023-05-15 RCSB 
WNL "Initial release"  2023-06-14 RCSB 
# 
