data_XGL
# 
_chem_comp.id                                    XGL 
_chem_comp.name                                  "[(1S,4R,6R)-6-HYDROXY-4-(GUANIN-9-YL)CYCLOHEX-2-EN-1-YL]METHYL DIHYDROGEN PHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H16 N5 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-05-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.259 
_chem_comp.one_letter_code                       G 
_chem_comp.three_letter_code                     XGL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XGL P      P    P 0 1 N N N -2.686 -9.775  20.847 -5.094 -0.678 -0.214 P      XGL 1  
XGL OP1    O1P  O 0 1 N N N -3.616 -10.062 21.959 -5.467 -0.604 1.216  OP1    XGL 2  
XGL OP2    O2P  O 0 1 N N N -1.560 -10.670 20.614 -6.406 -0.470 -1.123 OP2    XGL 3  
XGL "O5'"  O5*  O 0 1 N N N -2.092 -8.276  21.147 -4.020 0.474  -0.549 "O5'"  XGL 4  
XGL "C5'"  C5*  C 0 1 N N N -3.045 -7.287  21.589 -2.935 0.306  0.366  "C5'"  XGL 5  
XGL "C4'"  C4*  C 0 1 N N S -2.706 -5.921  21.076 -1.874 1.376  0.100  "C4'"  XGL 6  
XGL "C6'"  C6*  C 0 1 N N N -2.772 -6.010  19.621 -1.295 1.168  -1.269 "C6'"  XGL 7  
XGL "C7'"  C7*  C 0 1 N N N -2.125 -5.186  18.805 -0.035 1.253  -1.541 "C7'"  XGL 8  
XGL "C3'"  C3*  C 0 1 N N R -1.309 -5.498  21.543 -0.774 1.273  1.159  "C3'"  XGL 9  
XGL "O3'"  O3*  O 0 1 N N N -1.528 -5.055  22.871 -1.274 1.714  2.422  "O3'"  XGL 10 
XGL "C2'"  C2*  C 0 1 N N N -0.818 -4.295  20.739 0.398  2.164  0.728  "C2'"  XGL 11 
XGL "C1'"  C1*  C 0 1 N N R -0.690 -4.740  19.252 1.029  1.561  -0.528 "C1'"  XGL 12 
XGL N9     N9   N 0 1 Y N N 0.455  -5.627  18.906 1.734  0.327  -0.173 N9     XGL 13 
XGL C8     C8   C 0 1 Y N N 0.373  -7.002  18.893 1.160  -0.839 0.243  C8     XGL 14 
XGL N7     N7   N 0 1 Y N N 1.501  -7.578  18.558 2.082  -1.728 0.472  N7     XGL 15 
XGL C6     C6   C 0 1 N N N 3.729  -6.511  17.960 4.626  -1.672 0.288  C6     XGL 16 
XGL O6     O6   O 0 1 N N N 4.460  -7.470  17.728 4.856  -2.815 0.645  O6     XGL 17 
XGL C5     C5   C 0 1 Y N N 2.370  -6.516  18.342 3.299  -1.188 0.217  C5     XGL 18 
XGL C4     C4   C 0 1 Y N N 1.740  -5.307  18.552 3.088  0.132  -0.199 C4     XGL 19 
XGL N3     N3   N 0 1 N N N 2.249  -4.064  18.443 4.136  0.902  -0.517 N3     XGL 20 
XGL C2     C2   C 0 1 N N N 3.525  -4.065  18.083 5.364  0.440  -0.447 C2     XGL 21 
XGL N2     N2   N 0 1 N N N 4.201  -2.918  17.924 6.407  1.266  -0.784 N2     XGL 22 
XGL N1     N1   N 0 1 N N N 4.230  -5.221  17.854 5.633  -0.838 -0.055 N1     XGL 23 
XGL OP3    O3P  O 0 1 N Y N -3.457 -9.936  19.665 -4.449 -2.120 -0.526 OP3    XGL 24 
XGL HOP2   2HOP H 0 0 N N N -1.496 -10.865 19.686 -7.022 -1.178 -0.891 HOP2   XGL 25 
XGL "H5'"  1H5* H 0 1 N N N -3.023 -7.256  22.688 -2.496 -0.683 0.232  "H5'"  XGL 26 
XGL "H5''" 2H5* H 0 0 N N N -4.042 -7.566  21.217 -3.303 0.405  1.387  "H5''" XGL 27 
XGL "H4'"  H4*  H 0 1 N N N -3.404 -5.161  21.458 -2.334 2.362  0.152  "H4'"  XGL 28 
XGL "H6'"  H6*  H 0 1 N N N -3.380 -6.788  19.184 -1.973 0.933  -2.076 "H6'"  XGL 29 
XGL "H7'"  H7*  H 0 1 N N N -2.565 -4.841  17.881 0.275  1.093  -2.563 "H7'"  XGL 30 
XGL "H3'"  H3*  H 0 1 N N N -0.575 -6.310  21.438 -0.438 0.239  1.239  "H3'"  XGL 31 
XGL "HO3'" H3T  H 0 0 N Y N -1.577 -5.805  23.452 -0.544 1.646  3.052  "HO3'" XGL 32 
XGL "H2'"  1H2* H 0 1 N N N 0.153  -3.947  21.121 1.139  2.205  1.527  "H2'"  XGL 33 
XGL "H2''" 2H2* H 0 0 N N N -1.536 -3.466  20.824 0.034  3.168  0.510  "H2''" XGL 34 
XGL "H1'"  H1*  H 0 1 N N N -0.365 -3.894  18.629 1.738  2.272  -0.954 "H1'"  XGL 35 
XGL H8     H8   H 0 1 N N N -0.527 -7.548  19.134 0.099  -1.000 0.365  H8     XGL 36 
XGL HN21   1HN2 H 0 0 N N N 5.162  -2.857  17.655 6.231  2.177  -1.069 HN21   XGL 37 
XGL HN22   2HN2 H 0 0 N N N 3.611  -2.132  18.111 7.319  0.941  -0.734 HN22   XGL 38 
XGL HN1    HN1  H 0 1 N N N 5.189  -5.125  17.587 6.551  -1.147 -0.015 HN1    XGL 39 
XGL HOP3   3HOP H 0 0 N N N -4.379 -9.972  19.890 -4.220 -2.127 -1.465 HOP3   XGL 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XGL P     OP1    DOUB N N 1  
XGL P     OP2    SING N N 2  
XGL P     "O5'"  SING N N 3  
XGL P     OP3    SING N N 4  
XGL OP2   HOP2   SING N N 5  
XGL "O5'" "C5'"  SING N N 6  
XGL "C5'" "C4'"  SING N N 7  
XGL "C5'" "H5'"  SING N N 8  
XGL "C5'" "H5''" SING N N 9  
XGL "C4'" "C6'"  SING N N 10 
XGL "C4'" "C3'"  SING N N 11 
XGL "C4'" "H4'"  SING N N 12 
XGL "C6'" "C7'"  DOUB N N 13 
XGL "C6'" "H6'"  SING N N 14 
XGL "C7'" "C1'"  SING N N 15 
XGL "C7'" "H7'"  SING N N 16 
XGL "C3'" "O3'"  SING N N 17 
XGL "C3'" "C2'"  SING N N 18 
XGL "C3'" "H3'"  SING N N 19 
XGL "O3'" "HO3'" SING N N 20 
XGL "C2'" "C1'"  SING N N 21 
XGL "C2'" "H2'"  SING N N 22 
XGL "C2'" "H2''" SING N N 23 
XGL "C1'" N9     SING N N 24 
XGL "C1'" "H1'"  SING N N 25 
XGL N9    C8     SING Y N 26 
XGL N9    C4     SING Y N 27 
XGL C8    N7     DOUB Y N 28 
XGL C8    H8     SING N N 29 
XGL N7    C5     SING Y N 30 
XGL C6    O6     DOUB N N 31 
XGL C6    C5     SING N N 32 
XGL C6    N1     SING N N 33 
XGL C5    C4     DOUB Y N 34 
XGL C4    N3     SING N N 35 
XGL N3    C2     DOUB N N 36 
XGL C2    N2     SING N N 37 
XGL C2    N1     SING N N 38 
XGL N2    HN21   SING N N 39 
XGL N2    HN22   SING N N 40 
XGL N1    HN1    SING N N 41 
XGL OP3   HOP3   SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XGL SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3C=CC(n1c2N=C(NC(=O)c2nc1)N)CC3O"                                                                                                                  
XGL SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3C[C@@H](O)[C@H](CO[P](O)(O)=O)C=C3"                                                                                                
XGL SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)C=C3"                                                                                                     
XGL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@@H]3C[C@H]([C@@H](C=C3)COP(=O)(O)O)O)N=C(NC2=O)N"                                                                                                  
XGL SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(C=C3)COP(=O)(O)O)O)N=C(NC2=O)N"                                                                                                                
XGL InChI            InChI                1.03  "InChI=1S/C12H16N5O6P/c13-12-15-10-9(11(19)16-12)14-5-17(10)7-2-1-6(8(18)3-7)4-23-24(20,21)22/h1-2,5-8,18H,3-4H2,(H2,20,21,22)(H3,13,15,16,19)/t6-,7-,8+/m0/s1" 
XGL InChIKey         InChI                1.03  FOPKVDVUUHAUSX-BIIVOSGPSA-N                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XGL "SYSTEMATIC NAME" ACDLabs              10.04 "[(1S,4R,6R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-6-hydroxycyclohex-2-en-1-yl]methyl dihydrogen phosphate" 
XGL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1S,4R,6R)-4-(2-amino-6-oxo-1H-purin-9-yl)-6-hydroxy-1-cyclohex-2-enyl]methyl dihydrogen phosphate"             
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XGL "Create component"  2006-05-19 RCSB 
XGL "Modify descriptor" 2011-06-04 RCSB 
# 
