data_YQL
# 
_chem_comp.id                                    YQL 
_chem_comp.name                                  "(6M)-6-(2-chloro-4-methylphenyl)-2-[(morpholin-4-yl)methyl]-1H-benzimidazole-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H20 Cl N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-15 
_chem_comp.pdbx_modified_date                    2024-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        385.844 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YQL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FUC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YQL C10  C1  C  0 1 Y N N N N N 30.110 -17.852 -20.262 -0.704 0.643  -0.360 C10  YQL 1  
YQL C11  C2  C  0 1 Y N N N N N 29.092 -16.890 -20.300 -0.361 -0.674 -0.712 C11  YQL 2  
YQL C13  C3  C  0 1 Y N N N N N 28.899 -15.951 -19.287 0.933  -1.130 -0.526 C13  YQL 3  
YQL C15  C4  C  0 1 Y N N N N N 29.539 -15.007 -17.048 3.285  -0.779 0.208  C15  YQL 4  
YQL C16  C5  C  0 1 Y N N N N N 29.902 -13.658 -17.103 4.367  -0.037 -0.264 C16  YQL 5  
YQL C18  C6  C  0 1 Y N N N N N 29.718 -12.808 -16.027 5.655  -0.500 -0.072 C18  YQL 6  
YQL C19  C7  C  0 1 Y N N N N N 29.190 -13.288 -14.836 5.871  -1.697 0.585  C19  YQL 7  
YQL C20  C8  C  0 1 N N N N N N 28.999 -12.376 -13.653 7.277  -2.198 0.791  C20  YQL 8  
YQL C21  C9  C  0 1 Y N N N N N 28.857 -14.636 -14.759 4.800  -2.438 1.055  C21  YQL 9  
YQL C22  C10 C  0 1 Y N N N N N 29.024 -15.486 -15.841 3.510  -1.985 0.870  C22  YQL 10 
YQL C23  C11 C  0 1 Y N N N N N 30.760 -16.913 -18.111 1.576  1.024  0.365  C23  YQL 11 
YQL C24  C12 C  0 1 Y N N N N N 30.941 -17.857 -19.127 0.280  1.497  0.184  C24  YQL 12 
YQL C25  C13 C  0 1 N N N N N N 32.098 -18.792 -18.966 -0.063 2.880  0.558  C25  YQL 13 
YQL C1   C14 C  0 1 N N N N N N 28.611 -18.649 -23.449 -3.919 -0.503 -1.583 C1   YQL 14 
YQL C14  C15 C  0 1 Y N N N N N 29.738 -15.962 -18.173 1.901  -0.284 0.011  C14  YQL 15 
YQL C3   C16 C  0 1 N N N N N N 30.452 -18.496 -25.015 -6.077 -1.323 -0.848 C3   YQL 16 
YQL C4   C17 C  0 1 N N N N N N 31.590 -19.267 -25.641 -6.873 -1.772 0.380  C4   YQL 17 
YQL C6   C18 C  0 1 N N N N N N 30.323 -21.270 -25.525 -5.636 -0.254 1.760  C6   YQL 18 
YQL C7   C19 C  0 1 N N N N N N 29.175 -20.521 -24.877 -4.827 0.210  0.546  C7   YQL 19 
YQL C8   C20 C  0 1 Y N N N N N 29.041 -18.147 -22.108 -2.491 -0.303 -1.145 C8   YQL 20 
YQL N12  N1  N  0 1 Y N N N N N 28.455 -17.081 -21.514 -1.517 -1.248 -1.207 N12  YQL 21 
YQL N2   N2  N  0 1 N N N N N N 29.688 -19.374 -24.117 -4.737 -0.890 -0.426 N2   YQL 22 
YQL N9   N3  N  0 1 Y N N N N N 30.052 -18.631 -21.413 -2.012 0.800  -0.644 N9   YQL 23 
YQL O26  O1  O  0 1 N N N N N N 32.106 -19.818 -19.774 0.880  3.691  1.077  O26  YQL 24 
YQL O27  O2  O  0 1 N N N N N N 32.988 -18.579 -18.143 -1.196 3.289  0.398  O27  YQL 25 
YQL O5   O3  O  0 1 N N N N N N 31.114 -20.412 -26.368 -6.924 -0.701 1.327  O5   YQL 26 
YQL CL17 CL1 CL 0 0 N N N N N N 30.573 -12.989 -18.557 4.097  1.466  -1.090 CL17 YQL 27 
YQL H39  H1  H  0 1 N N N N N N 28.106 -15.221 -19.365 1.193  -2.142 -0.797 H39  YQL 28 
YQL H40  H2  H  0 1 N N N N N N 29.987 -11.766 -16.114 6.494  0.073  -0.437 H40  YQL 29 
YQL H42  H3  H  0 1 N N N N N N 27.994 -11.930 -13.692 7.663  -1.818 1.737  H42  YQL 30 
YQL H43  H4  H  0 1 N N N N N N 29.107 -12.954 -12.723 7.276  -3.288 0.811  H43  YQL 31 
YQL H41  H5  H  0 1 N N N N N N 29.756 -11.578 -13.679 7.910  -1.850 -0.025 H41  YQL 32 
YQL H44  H6  H  0 1 N N N N N N 28.459 -15.029 -13.835 4.975  -3.372 1.568  H44  YQL 33 
YQL H45  H7  H  0 1 N N N N N N 28.754 -16.528 -15.750 2.675  -2.564 1.237  H45  YQL 34 
YQL H46  H8  H  0 1 N N N N N N 31.425 -16.919 -17.260 2.332  1.673  0.781  H46  YQL 35 
YQL H28  H9  H  0 1 N N N N N N 28.315 -17.793 -24.073 -4.304 0.425  -2.006 H28  YQL 36 
YQL H29  H10 H  0 1 N N N N N N 27.752 -19.324 -23.320 -3.961 -1.291 -2.336 H29  YQL 37 
YQL H30  H11 H  0 1 N N N N N N 29.789 -18.118 -25.807 -5.986 -2.155 -1.547 H30  YQL 38 
YQL H31  H12 H  0 1 N N N N N N 30.857 -17.650 -24.440 -6.592 -0.494 -1.333 H31  YQL 39 
YQL H32  H13 H  0 1 N N N N N N 32.133 -18.605 -26.332 -7.885 -2.040 0.080  H32  YQL 40 
YQL H33  H14 H  0 1 N N N N N N 32.272 -19.606 -24.847 -6.386 -2.636 0.834  H33  YQL 41 
YQL H34  H15 H  0 1 N N N N N N 29.914 -22.089 -26.135 -5.113 -1.074 2.254  H34  YQL 42 
YQL H35  H16 H  0 1 N N N N N N 30.967 -21.686 -24.736 -5.754 0.575  2.458  H35  YQL 43 
YQL H37  H17 H  0 1 N N N N N N 28.637 -21.197 -24.197 -5.323 1.064  0.084  H37  YQL 44 
YQL H36  H18 H  0 1 N N N N N N 28.487 -20.163 -25.657 -3.826 0.499  0.864  H36  YQL 45 
YQL H38  H19 H  0 1 N N N N N N 27.703 -16.534 -21.883 -1.615 -2.155 -1.537 H38  YQL 46 
YQL H47  H22 H  0 1 N N N N N N 32.884 -20.340 -19.616 0.608  4.590  1.306  H47  YQL 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YQL C1  N2   SING N N 1  
YQL C1  C8   SING N N 2  
YQL N2  C3   SING N N 3  
YQL N2  C7   SING N N 4  
YQL C3  C4   SING N N 5  
YQL C4  O5   SING N N 6  
YQL O5  C6   SING N N 7  
YQL C6  C7   SING N N 8  
YQL C8  N9   DOUB Y N 9  
YQL C8  N12  SING Y N 10 
YQL N9  C10  SING Y N 11 
YQL C10 C11  DOUB Y N 12 
YQL C10 C24  SING Y N 13 
YQL C11 N12  SING Y N 14 
YQL C11 C13  SING Y N 15 
YQL C13 C14  DOUB Y N 16 
YQL C14 C15  SING N N 17 
YQL C14 C23  SING Y N 18 
YQL C15 C16  DOUB Y N 19 
YQL C15 C22  SING Y N 20 
YQL C16 CL17 SING N N 21 
YQL C16 C18  SING Y N 22 
YQL C18 C19  DOUB Y N 23 
YQL C19 C20  SING N N 24 
YQL C19 C21  SING Y N 25 
YQL C21 C22  DOUB Y N 26 
YQL C23 C24  DOUB Y N 27 
YQL C24 C25  SING N N 28 
YQL C25 O26  SING N N 29 
YQL C25 O27  DOUB N N 30 
YQL C13 H39  SING N N 31 
YQL C18 H40  SING N N 32 
YQL C20 H42  SING N N 33 
YQL C20 H43  SING N N 34 
YQL C20 H41  SING N N 35 
YQL C21 H44  SING N N 36 
YQL C22 H45  SING N N 37 
YQL C23 H46  SING N N 38 
YQL C1  H28  SING N N 39 
YQL C1  H29  SING N N 40 
YQL C3  H30  SING N N 41 
YQL C3  H31  SING N N 42 
YQL C4  H32  SING N N 43 
YQL C4  H33  SING N N 44 
YQL C6  H34  SING N N 45 
YQL C6  H35  SING N N 46 
YQL C7  H37  SING N N 47 
YQL C7  H36  SING N N 48 
YQL N12 H38  SING N N 49 
YQL O26 H47  SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YQL SMILES           ACDLabs              12.01 "O=C(O)c1cc(cc2[NH]c(CN3CCOCC3)nc12)c1ccc(C)cc1Cl"                                                                                                      
YQL InChI            InChI                1.06  "InChI=1S/C20H20ClN3O3/c1-12-2-3-14(16(21)8-12)13-9-15(20(25)26)19-17(10-13)22-18(23-19)11-24-4-6-27-7-5-24/h2-3,8-10H,4-7,11H2,1H3,(H,22,23)(H,25,26)" 
YQL InChIKey         InChI                1.06  VUKBMIDXDNOSLK-UHFFFAOYSA-N                                                                                                                             
YQL SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(c(Cl)c1)c2cc3[nH]c(CN4CCOCC4)nc3c(c2)C(O)=O"                                                                                                    
YQL SMILES           CACTVS               3.385 "Cc1ccc(c(Cl)c1)c2cc3[nH]c(CN4CCOCC4)nc3c(c2)C(O)=O"                                                                                                    
YQL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)[nH]c(n3)CN4CCOCC4)C(=O)O"                                                                                                  
YQL SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)[nH]c(n3)CN4CCOCC4)C(=O)O"                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YQL "SYSTEMATIC NAME" ACDLabs              12.01 "(6M)-6-(2-chloro-4-methylphenyl)-2-[(morpholin-4-yl)methyl]-1H-benzimidazole-4-carboxylic acid" 
YQL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-chloranyl-4-methyl-phenyl)-2-(morpholin-4-ylmethyl)-1~{H}-benzimidazole-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YQL "Create component" 2023-02-15 RCSB 
YQL "Initial release"  2024-02-21 RCSB 
# 
