data_ZSL
# 
_chem_comp.id                                    ZSL 
_chem_comp.name                                  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(3aR,5R,6R,6aR)-6-hydroxytetrahydro-2H-furo[2,3-d][1,3]oxathiol-5-yl]methyl dihydrogen diphosphate (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H23 N5 O13 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        587.392 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZSL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F86 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZSL C15 C1  C 0 1 N N R N N N 192.320 185.577 133.517 -2.906 -1.245 1.474  C15 ZSL 1  
ZSL C17 C2  C 0 1 N N R N N N 192.569 184.371 131.488 -5.294 -0.851 1.748  C17 ZSL 2  
ZSL C20 C3  C 0 1 N N R N N N 183.509 180.254 135.687 6.946  1.418  1.309  C20 ZSL 3  
ZSL C21 C4  C 0 1 N N R N N N 183.905 178.794 135.934 7.909  1.831  0.146  C21 ZSL 4  
ZSL C22 C5  C 0 1 Y N N N N N 197.584 184.906 134.224 -7.842 3.261  0.469  C22 ZSL 5  
ZSL C24 C6  C 0 1 N N R N N N 185.663 180.328 136.524 5.904  0.782  -0.696 C24 ZSL 6  
ZSL C26 C7  C 0 1 N N N N N N 186.480 180.352 135.237 5.420  -0.648 -0.944 C26 ZSL 7  
ZSL C28 C8  C 0 1 Y N N N N N 198.245 182.977 133.041 -8.013 2.553  -1.722 C28 ZSL 8  
ZSL C14 C9  C 0 1 N N N N N N 191.733 184.841 134.686 -2.004 -2.374 0.973  C14 ZSL 9  
ZSL C16 C10 C 0 1 N N S N N N 191.614 185.333 132.179 -4.165 -1.824 2.156  C16 ZSL 10 
ZSL C18 C11 C 0 1 N N R N N N 193.894 184.920 131.962 -4.582 0.202  0.867  C18 ZSL 11 
ZSL C19 C12 C 0 1 N N N N N N 181.652 178.491 136.565 7.426  4.065  0.873  C19 ZSL 12 
ZSL C23 C13 C 0 1 N N R N N N 185.141 178.912 136.808 7.418  0.879  -0.978 C23 ZSL 13 
ZSL C25 C14 C 0 1 Y N N N N N 196.080 184.142 132.670 -6.417 1.585  -0.195 C25 ZSL 14 
ZSL C27 C15 C 0 1 Y N N N N N 196.972 183.037 132.309 -6.984 1.626  -1.480 C27 ZSL 15 
ZSL C29 C16 C 0 1 Y N N N N N 195.172 182.912 131.099 -5.445 0.098  -1.502 C29 ZSL 16 
ZSL N03 N1  N 0 1 Y N N N N N 198.470 183.931 133.964 -8.402 3.341  -0.725 N03 ZSL 17 
ZSL N04 N2  N 0 1 Y N N N N N 196.414 185.053 133.624 -6.873 2.413  0.739  N04 ZSL 18 
ZSL N05 N3  N 0 1 N N N N N N 199.137 181.992 132.776 -8.606 2.643  -2.969 N05 ZSL 19 
ZSL N06 N4  N 0 1 Y N N N N N 196.371 182.319 131.348 -6.346 0.694  -2.228 N06 ZSL 20 
ZSL N07 N5  N 0 1 Y N N N N N 195.021 183.995 131.900 -5.450 0.613  -0.240 N07 ZSL 21 
ZSL O31 O1  O 0 1 N N N N N N 191.555 186.597 131.503 -4.004 -1.837 3.576  O31 ZSL 22 
ZSL O32 O2  O 0 1 N N N N N N 192.564 184.463 130.060 -5.866 -0.234 2.903  O32 ZSL 23 
ZSL O33 O3  O 0 1 N N N N N N 193.655 185.087 133.343 -3.408 -0.472 0.362  O33 ZSL 24 
ZSL O34 O4  O 0 1 N N N N N N 182.905 178.012 136.617 7.593  3.172  -0.239 O34 ZSL 25 
ZSL O35 O5  O 0 1 N N N N N N 184.832 178.676 138.185 7.659  1.447  -2.266 O35 ZSL 26 
ZSL O36 O6  O 0 1 N N N N N N 184.414 181.041 136.524 5.695  1.136  0.676  O36 ZSL 27 
ZSL O37 O7  O 0 1 N N N N N N 186.950 181.686 135.036 4.000  -0.703 -0.795 O37 ZSL 28 
ZSL O38 O8  O 0 1 N N N N N N 186.854 182.912 137.191 3.255  -2.546 -2.515 O38 ZSL 29 
ZSL O39 O9  O 0 1 N N N N N N 188.888 181.496 136.776 3.690  -3.108 -0.093 O39 ZSL 30 
ZSL O40 O10 O 0 1 N N N N N N 188.444 183.648 135.493 1.608  -1.780 -0.615 O40 ZSL 31 
ZSL O41 O11 O 0 1 N N N N N N 188.758 183.793 132.926 0.814  -3.715 0.797  O41 ZSL 32 
ZSL O42 O12 O 0 1 N N N N N N 190.264 182.382 134.436 -0.177 -3.488 -1.513 O42 ZSL 33 
ZSL O43 O13 O 0 1 N N N N N N 190.312 184.965 134.579 -0.809 -1.820 0.418  O43 ZSL 34 
ZSL P44 P1  P 0 1 N N N N N N 187.746 182.422 136.234 3.150  -2.057 -0.985 P44 ZSL 35 
ZSL P45 P2  P 0 1 N N N N N N 189.480 183.630 134.257 0.369  -2.723 -0.206 P45 ZSL 36 
ZSL S46 S1  S 0 1 N N N N N N 181.798 180.256 136.037 6.823  2.997  2.235  S46 ZSL 37 
ZSL H1  H1  H 0 1 N N N N N N 192.330 186.656 133.728 -2.360 -0.603 2.166  H1  ZSL 38 
ZSL H2  H2  H 0 1 N N N N N N 192.416 183.341 131.842 -6.059 -1.374 1.175  H2  ZSL 39 
ZSL H3  H3  H 0 1 N N N N N N 183.632 180.506 134.623 7.326  0.595  1.914  H3  ZSL 40 
ZSL H4  H4  H 0 1 N N N N N N 184.176 178.324 134.977 8.962  1.702  0.399  H4  ZSL 41 
ZSL H5  H5  H 0 1 N N N N N N 197.847 185.628 134.983 -8.189 3.921  1.251  H5  ZSL 42 
ZSL H6  H6  H 0 1 N N N N N N 186.295 180.656 137.363 5.363  1.473  -1.343 H6  ZSL 43 
ZSL H7  H7  H 0 1 N N N N N N 185.849 180.047 134.389 5.691  -0.953 -1.955 H7  ZSL 44 
ZSL H8  H8  H 0 1 N N N N N N 187.334 179.665 135.325 5.888  -1.320 -0.224 H8  ZSL 45 
ZSL H9  H9  H 0 1 N N N N N N 192.025 183.781 134.652 -1.747 -3.031 1.805  H9  ZSL 46 
ZSL H10 H10 H 0 1 N N N N N N 192.082 185.287 135.629 -2.529 -2.946 0.207  H10 ZSL 47 
ZSL H11 H11 H 0 1 N N N N N N 190.622 184.880 132.326 -4.372 -2.828 1.786  H11 ZSL 48 
ZSL H12 H12 H 0 1 N N N N N N 194.124 185.871 131.460 -4.294 1.066  1.466  H12 ZSL 49 
ZSL H13 H13 H 0 1 N Y N N N N 181.178 178.427 137.555 8.378  4.522  1.141  H13 ZSL 50 
ZSL H14 H14 H 0 1 N Y N N N N 181.056 177.923 135.836 6.690  4.834  0.636  H14 ZSL 51 
ZSL H15 H15 H 0 1 N N N N N N 185.891 178.186 136.461 7.891  -0.099 -0.890 H15 ZSL 52 
ZSL H16 H16 H 0 1 N N N N N N 194.449 182.571 130.372 -4.791 -0.688 -1.849 H16 ZSL 53 
ZSL H17 H17 H 0 1 N N N N N N 199.941 182.104 133.360 -9.314 3.287  -3.123 H17 ZSL 54 
ZSL H18 H18 H 0 1 N N N N N N 198.715 181.103 132.956 -8.312 2.063  -3.688 H18 ZSL 55 
ZSL H19 H19 H 0 1 N N N N N N 190.952 187.172 131.959 -4.787 -2.135 4.058  H19 ZSL 56 
ZSL H20 H20 H 0 1 N N N N N N 191.742 184.125 129.723 -6.325 -0.849 3.491  H20 ZSL 57 
ZSL H21 H21 H 0 1 N N N N N N 185.623 178.756 138.706 7.370  0.891  -3.002 H21 ZSL 58 
ZSL H22 H22 H 0 1 N N N N N N 187.100 182.587 138.049 2.919  -1.906 -3.157 H22 ZSL 59 
ZSL H23 H23 H 0 1 N N N N N N 190.193 181.848 133.654 -0.486 -2.899 -2.214 H23 ZSL 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZSL O32 C17 SING N N 1  
ZSL C29 N06 DOUB Y N 2  
ZSL C29 N07 SING Y N 3  
ZSL N06 C27 SING Y N 4  
ZSL C17 C18 SING N N 5  
ZSL C17 C16 SING N N 6  
ZSL O31 C16 SING N N 7  
ZSL N07 C18 SING N N 8  
ZSL N07 C25 SING Y N 9  
ZSL C18 O33 SING N N 10 
ZSL C16 C15 SING N N 11 
ZSL C27 C25 DOUB Y N 12 
ZSL C27 C28 SING Y N 13 
ZSL C25 N04 SING Y N 14 
ZSL N05 C28 SING N N 15 
ZSL O41 P45 DOUB N N 16 
ZSL C28 N03 DOUB Y N 17 
ZSL O33 C15 SING N N 18 
ZSL C15 C14 SING N N 19 
ZSL N04 C22 DOUB Y N 20 
ZSL N03 C22 SING Y N 21 
ZSL P45 O42 SING N N 22 
ZSL P45 O43 SING N N 23 
ZSL P45 O40 SING N N 24 
ZSL O43 C14 SING N N 25 
ZSL O37 C26 SING N N 26 
ZSL O37 P44 SING N N 27 
ZSL C26 C24 SING N N 28 
ZSL O40 P44 SING N N 29 
ZSL C20 C21 SING N N 30 
ZSL C20 S46 SING N N 31 
ZSL C20 O36 SING N N 32 
ZSL C21 O34 SING N N 33 
ZSL C21 C23 SING N N 34 
ZSL S46 C19 SING N N 35 
ZSL P44 O39 DOUB N N 36 
ZSL P44 O38 SING N N 37 
ZSL O36 C24 SING N N 38 
ZSL C24 C23 SING N N 39 
ZSL C19 O34 SING N N 40 
ZSL C23 O35 SING N N 41 
ZSL C15 H1  SING N N 42 
ZSL C17 H2  SING N N 43 
ZSL C20 H3  SING N N 44 
ZSL C21 H4  SING N N 45 
ZSL C22 H5  SING N N 46 
ZSL C24 H6  SING N N 47 
ZSL C26 H7  SING N N 48 
ZSL C26 H8  SING N N 49 
ZSL C14 H9  SING N N 50 
ZSL C14 H10 SING N N 51 
ZSL C16 H11 SING N N 52 
ZSL C18 H12 SING N N 53 
ZSL C19 H13 SING N N 54 
ZSL C19 H14 SING N N 55 
ZSL C23 H15 SING N N 56 
ZSL C29 H16 SING N N 57 
ZSL N05 H17 SING N N 58 
ZSL N05 H18 SING N N 59 
ZSL O31 H19 SING N N 60 
ZSL O32 H20 SING N N 61 
ZSL O35 H21 SING N N 62 
ZSL O38 H22 SING N N 63 
ZSL O42 H23 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZSL SMILES           ACDLabs              12.01 "Nc1ncnc2c1ncn2C1OC(COP(=O)(O)OP(=O)(O)OCC2OC3SCOC3C2O)C(O)C1O"                                                                                                                                                                                      
ZSL InChI            InChI                1.06  "InChI=1S/C16H23N5O13P2S/c17-13-8-14(19-3-18-13)21(4-20-8)15-11(24)9(22)6(32-15)1-30-35(25,26)34-36(27,28)31-2-7-10(23)12-16(33-7)37-5-29-12/h3-4,6-7,9-12,15-16,22-24H,1-2,5H2,(H,25,26)(H,27,28)(H2,17,18,19)/t6-,7-,9-,10-,11-,12-,15-,16-/m1/s1" 
ZSL InChIKey         InChI                1.06  JPGLSFZFEDXQNE-MLCZKHQMSA-N                                                                                                                                                                                                                          
ZSL SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@@H]5SCO[C@@H]5[C@@H]4O)[C@@H](O)[C@H]3O"                                                                                                                                           
ZSL SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]5SCO[CH]5[CH]4O)[CH](O)[CH]3O"                                                                                                                                                        
ZSL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@@H]5[C@H](O4)SCO5)O)O)O)N"                                                                                                                                      
ZSL SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C5C(O4)SCO5)O)O)O)N"                                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZSL "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(3aR,5R,6R,6aR)-6-hydroxytetrahydro-2H-furo[2,3-d][1,3]oxathiol-5-yl]methyl dihydrogen diphosphate (non-preferred name)"                                           
ZSL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(3~{a}~{R},5~{R},6~{R},6~{a}~{R})-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZSL "Create component" 2023-03-29 RCSB 
ZSL "Initial release"  2023-04-05 RCSB 
ZSL "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ZSL 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
