data_3VM
# 
_chem_comp.id                                    3VM 
_chem_comp.name                                  "trans-N-{(1S)-1-[4-(3-amino-2H-indazol-6-yl)pyridin-2-yl]-2-phenylethyl}-4-(aminomethyl)cyclohexanecarboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-11-14 
_chem_comp.pdbx_modified_date                    2015-01-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.593 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3VM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WXI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3VM C13 C1  C 0 1 Y N N 44.671 -21.024 29.987 3.942  0.061  0.427  C13 3VM 1  
3VM C18 C2  C 0 1 Y N N 48.060 -21.742 32.349 7.516  -1.117 -1.339 C18 3VM 2  
3VM C17 C3  C 0 1 Y N N 41.277 -20.592 28.455 0.414  1.183  1.093  C17 3VM 3  
3VM C16 C4  C 0 1 Y N N 46.988 -20.859 30.615 6.246  -0.629 0.506  C16 3VM 4  
3VM C15 C5  C 0 1 Y N N 39.793 -23.148 28.765 -2.474 3.327  -0.150 C15 3VM 5  
3VM C19 C6  C 0 1 N N N 38.935 -18.308 29.145 -1.993 -0.595 -0.002 C19 3VM 6  
3VM C20 C7  C 0 1 N N N 37.057 -16.675 29.540 -4.447 -0.922 0.154  C20 3VM 7  
3VM C21 C8  C 0 1 N N N 38.817 -16.170 27.743 -2.968 -2.806 -0.560 C21 3VM 8  
3VM C22 C9  C 0 1 N N N 36.169 -15.617 28.896 -5.549 -1.922 0.510  C22 3VM 9  
3VM C23 C10 C 0 1 N N N 37.912 -15.064 27.173 -4.071 -3.806 -0.204 C23 3VM 10 
3VM C24 C11 C 0 1 N N N 38.046 -17.255 28.522 -3.079 -1.580 0.349  C24 3VM 11 
3VM C11 C12 C 0 1 Y N N 42.872 -20.332 26.780 1.484  0.965  3.127  C11 3VM 12 
3VM C12 C13 C 0 1 Y N N 46.774 -21.619 31.773 6.239  -0.711 -0.964 C12 3VM 13 
3VM C27 C14 C 0 1 N N N 36.057 -13.421 27.767 -6.540 -4.148 -0.042 C27 3VM 14 
3VM C1  C15 C 0 1 Y N N 41.153 -25.376 29.720 -4.641 4.029  -1.717 C1  3VM 15 
3VM C2  C16 C 0 1 Y N N 41.177 -25.058 28.356 -3.357 4.305  -2.149 C2  3VM 16 
3VM C3  C17 C 0 1 Y N N 40.459 -24.574 30.612 -4.842 3.401  -0.502 C3  3VM 17 
3VM C4  C18 C 0 1 Y N N 45.474 -22.103 32.052 5.057  -0.394 -1.662 C4  3VM 18 
3VM C5  C19 C 0 1 Y N N 44.439 -21.804 31.144 3.949  -0.020 -0.978 C5  3VM 19 
3VM C6  C20 C 0 1 Y N N 40.501 -23.942 27.865 -2.274 3.954  -1.365 C6  3VM 20 
3VM C7  C21 C 0 1 Y N N 39.790 -23.448 30.131 -3.758 3.050  0.282  C7  3VM 21 
3VM C8  C22 C 0 1 Y N N 43.901 -20.541 27.691 2.659  0.574  2.518  C8  3VM 22 
3VM C9  C23 C 0 1 Y N N 45.957 -20.528 29.709 5.065  -0.235 1.167  C9  3VM 23 
3VM C10 C24 C 0 1 Y N N 42.245 -20.829 29.432 1.545  0.797  0.405  C10 3VM 24 
3VM C14 C25 C 0 1 Y N N 43.589 -20.770 29.040 2.703  0.482  1.124  C14 3VM 25 
3VM C25 C26 C 0 1 N N N 37.007 -14.495 28.267 -5.438 -3.148 -0.398 C25 3VM 26 
3VM C26 C27 C 0 1 N N N 39.108 -21.899 28.289 -1.293 2.938  0.702  C26 3VM 27 
3VM C28 C28 C 0 1 N N S 39.806 -20.642 28.844 -0.840 1.525  0.331  C28 3VM 28 
3VM N29 N1  N 0 1 Y N N 41.563 -20.364 27.133 0.414  1.253  2.411  N29 3VM 29 
3VM N30 N2  N 0 1 Y N N 48.990 -21.054 31.671 8.241  -1.273 -0.218 N30 3VM 30 
3VM N31 N3  N 0 1 Y N N 48.327 -20.549 30.625 7.459  -0.973 0.902  N31 3VM 31 
3VM N32 N4  N 0 1 N N N 48.268 -22.419 33.513 7.960  -1.325 -2.635 N32 3VM 32 
3VM N33 N5  N 0 1 N N N 36.744 -12.219 27.483 -7.852 -3.558 -0.343 N33 3VM 33 
3VM N34 N6  N 0 1 N N N 39.039 -19.484 28.430 -1.895 0.568  0.672  N34 3VM 34 
3VM O35 O1  O 0 1 N N N 39.501 -18.099 30.203 -1.209 -0.849 -0.892 O35 3VM 35 
3VM H1  H1  H 0 1 N N N 36.425 -17.486 29.930 -4.557 -0.615 -0.887 H1  3VM 36 
3VM H2  H2  H 0 1 N N N 37.619 -16.218 30.368 -4.525 -0.049 0.801  H2  3VM 37 
3VM H3  H3  H 0 1 N N N 39.347 -16.651 26.908 -1.994 -3.274 -0.421 H3  3VM 38 
3VM H4  H4  H 0 1 N N N 39.548 -15.706 28.422 -3.079 -2.499 -1.600 H4  3VM 39 
3VM H5  H5  H 0 1 N N N 35.511 -15.185 29.664 -5.438 -2.229 1.550  H5  3VM 40 
3VM H6  H6  H 0 1 N N N 35.558 -16.090 28.113 -6.523 -1.453 0.371  H6  3VM 41 
3VM H7  H7  H 0 1 N N N 38.539 -14.257 26.766 -3.992 -4.679 -0.851 H7  3VM 42 
3VM H8  H8  H 0 1 N N N 37.289 -15.484 26.370 -3.960 -4.113 0.836  H8  3VM 43 
3VM H9  H9  H 0 1 N N N 37.433 -17.779 27.774 -2.969 -1.887 1.388  H9  3VM 44 
3VM H10 H10 H 0 1 N N N 43.125 -20.136 25.749 1.439  1.035  4.204  H10 3VM 45 
3VM H11 H11 H 0 1 N N N 35.298 -13.226 28.539 -6.408 -5.058 -0.627 H11 3VM 46 
3VM H12 H12 H 0 1 N N N 35.564 -13.777 26.850 -6.484 -4.387 1.020  H12 3VM 47 
3VM H13 H13 H 0 1 N N N 41.677 -26.250 30.078 -5.487 4.304  -2.329 H13 3VM 48 
3VM H14 H14 H 0 1 N N N 41.728 -25.688 27.673 -3.200 4.795  -3.098 H14 3VM 49 
3VM H15 H15 H 0 1 N N N 40.436 -24.817 31.664 -5.845 3.186  -0.164 H15 3VM 50 
3VM H16 H16 H 0 1 N N N 45.280 -22.687 32.939 5.035  -0.449 -2.740 H16 3VM 51 
3VM H17 H17 H 0 1 N N N 43.445 -22.179 31.336 3.049  0.220  -1.524 H17 3VM 52 
3VM H18 H18 H 0 1 N N N 40.525 -23.699 26.813 -1.271 4.170  -1.702 H18 3VM 53 
3VM H19 H19 H 0 1 N N N 39.265 -22.802 30.820 -3.915 2.560  1.231  H19 3VM 54 
3VM H20 H20 H 0 1 N N N 44.930 -20.527 27.364 3.531  0.340  3.110  H20 3VM 55 
3VM H21 H21 H 0 1 N N N 46.148 -19.919 28.838 5.042  -0.167 2.245  H21 3VM 56 
3VM H22 H22 H 0 1 N N N 41.968 -21.050 30.452 1.537  0.737  -0.673 H22 3VM 57 
3VM H23 H23 H 0 1 N N N 37.644 -14.059 29.051 -5.549 -2.841 -1.439 H23 3VM 58 
3VM H24 H24 H 0 1 N N N 39.135 -21.870 27.190 -0.476 3.639  0.531  H24 3VM 59 
3VM H25 H25 H 0 1 N N N 38.062 -21.910 28.630 -1.579 2.963  1.753  H25 3VM 60 
3VM H26 H26 H 0 1 N N N 39.761 -20.707 29.941 -0.638 1.478  -0.740 H26 3VM 61 
3VM H27 H27 H 0 1 N N N 49.958 -20.944 31.896 9.170  -1.551 -0.190 H27 3VM 62 
3VM H28 H28 H 0 1 N N N 47.413 -22.845 33.809 7.358  -1.186 -3.383 H28 3VM 63 
3VM H29 H29 H 0 1 N N N 48.960 -23.126 33.368 8.874  -1.610 -2.795 H29 3VM 64 
3VM H30 H30 H 0 1 N N N 36.094 -11.532 27.157 -8.597 -4.200 -0.116 H30 3VM 65 
3VM H31 H31 H 0 1 N N N 37.191 -11.887 28.313 -7.972 -2.680 0.138  H31 3VM 66 
3VM H33 H33 H 0 1 N N N 38.548 -19.541 27.561 -2.522 0.771  1.383  H33 3VM 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3VM C11 N29 DOUB Y N 1  
3VM C11 C8  SING Y N 2  
3VM N29 C17 SING Y N 3  
3VM C23 C21 SING N N 4  
3VM C23 C25 SING N N 5  
3VM N33 C27 SING N N 6  
3VM C8  C14 DOUB Y N 7  
3VM C21 C24 SING N N 8  
3VM C27 C25 SING N N 9  
3VM C6  C2  DOUB Y N 10 
3VM C6  C15 SING Y N 11 
3VM C25 C22 SING N N 12 
3VM C26 C15 SING N N 13 
3VM C26 C28 SING N N 14 
3VM C2  C1  SING Y N 15 
3VM N34 C28 SING N N 16 
3VM N34 C19 SING N N 17 
3VM C17 C28 SING N N 18 
3VM C17 C10 DOUB Y N 19 
3VM C24 C19 SING N N 20 
3VM C24 C20 SING N N 21 
3VM C15 C7  DOUB Y N 22 
3VM C22 C20 SING N N 23 
3VM C14 C10 SING Y N 24 
3VM C14 C13 SING N N 25 
3VM C19 O35 DOUB N N 26 
3VM C9  C13 DOUB Y N 27 
3VM C9  C16 SING Y N 28 
3VM C1  C3  DOUB Y N 29 
3VM C13 C5  SING Y N 30 
3VM C7  C3  SING Y N 31 
3VM C16 N31 DOUB Y N 32 
3VM C16 C12 SING Y N 33 
3VM N31 N30 SING Y N 34 
3VM C5  C4  DOUB Y N 35 
3VM N30 C18 SING Y N 36 
3VM C12 C4  SING Y N 37 
3VM C12 C18 DOUB Y N 38 
3VM C18 N32 SING N N 39 
3VM C20 H1  SING N N 40 
3VM C20 H2  SING N N 41 
3VM C21 H3  SING N N 42 
3VM C21 H4  SING N N 43 
3VM C22 H5  SING N N 44 
3VM C22 H6  SING N N 45 
3VM C23 H7  SING N N 46 
3VM C23 H8  SING N N 47 
3VM C24 H9  SING N N 48 
3VM C11 H10 SING N N 49 
3VM C27 H11 SING N N 50 
3VM C27 H12 SING N N 51 
3VM C1  H13 SING N N 52 
3VM C2  H14 SING N N 53 
3VM C3  H15 SING N N 54 
3VM C4  H16 SING N N 55 
3VM C5  H17 SING N N 56 
3VM C6  H18 SING N N 57 
3VM C7  H19 SING N N 58 
3VM C8  H20 SING N N 59 
3VM C9  H21 SING N N 60 
3VM C10 H22 SING N N 61 
3VM C25 H23 SING N N 62 
3VM C26 H24 SING N N 63 
3VM C26 H25 SING N N 64 
3VM C28 H26 SING N N 65 
3VM N30 H27 SING N N 66 
3VM N32 H28 SING N N 67 
3VM N32 H29 SING N N 68 
3VM N33 H30 SING N N 69 
3VM N33 H31 SING N N 70 
3VM N34 H33 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3VM SMILES           ACDLabs              12.01 "O=C(NC(c3nccc(c1ccc2c(N)nnc2c1)c3)Cc4ccccc4)C5CCC(CN)CC5" 
3VM InChI            InChI                1.03  
"InChI=1S/C28H32N6O/c29-17-19-6-8-20(9-7-19)28(35)32-26(14-18-4-2-1-3-5-18)25-16-22(12-13-31-25)21-10-11-23-24(15-21)33-34-27(23)30/h1-5,10-13,15-16,19-20,26H,6-9,14,17,29H2,(H,32,35)(H3,30,33,34)/t19-,20-,26-/m0/s1" 
3VM InChIKey         InChI                1.03  ABPMTNUZKFZRKL-DYLHXGEVSA-N 
3VM SMILES_CANONICAL CACTVS               3.385 "NC[C@H]1CC[C@@H](CC1)C(=O)N[C@@H](Cc2ccccc2)c3cc(ccn3)c4ccc5c(N)[nH]nc5c4" 
3VM SMILES           CACTVS               3.385 "NC[CH]1CC[CH](CC1)C(=O)N[CH](Cc2ccccc2)c3cc(ccn3)c4ccc5c(N)[nH]nc5c4" 
3VM SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)C[C@@H](c2cc(ccn2)c3ccc4c(c3)n[nH]c4N)NC(=O)C5CCC(CC5)CN" 
3VM SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CC(c2cc(ccn2)c3ccc4c(c3)n[nH]c4N)NC(=O)C5CCC(CC5)CN" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3VM "SYSTEMATIC NAME" ACDLabs              12.01 "trans-N-{(1S)-1-[4-(3-amino-2H-indazol-6-yl)pyridin-2-yl]-2-phenylethyl}-4-(aminomethyl)cyclohexanecarboxamide" 
3VM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-(aminomethyl)-N-[(1S)-1-[4-(3-azanyl-2H-indazol-6-yl)pyridin-2-yl]-2-phenyl-ethyl]cyclohexane-1-carboxamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3VM "Create component" 2014-11-14 RCSB 
3VM "Initial release"  2015-01-28 RCSB 
# 
