data_4IM
# 
_chem_comp.id                                    4IM 
_chem_comp.name                                  "scyllo-inositol 1,2,3,5-tetrakisphosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H16 O18 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(1R,2S,4R,5S)-2,4-bis(oxidanyl)-3,5,6-triphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-23 
_chem_comp.pdbx_modified_date                    2024-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        500.075 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4IM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PP9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4IM C04 C1  C 0 1 N N S N N N 9.483  29.939 85.176 -1.303 1.308  0.698  C04 4IM 1  
4IM C03 C2  C 0 1 N N R N N N 10.854 29.876 85.813 0.077  1.255  0.038  C03 4IM 2  
4IM C02 C3  C 0 1 N N N N N N 11.581 28.652 85.289 0.802  -0.019 0.476  C02 4IM 3  
4IM C01 C4  C 0 1 N N S N N N 11.813 28.822 83.809 -0.014 -1.242 0.052  C01 4IM 4  
4IM C06 C5  C 0 1 N N R N N N 10.460 28.773 83.145 -1.393 -1.188 0.711  C06 4IM 5  
4IM C05 C6  C 0 1 N N N N N N 9.685  29.980 83.670 -2.119 0.086  0.274  C05 4IM 6  
4IM O02 O1  O 0 1 N N N N N N 12.836 28.498 85.964 2.091  -0.069 -0.141 O02 4IM 7  
4IM O03 O2  O 0 1 N N N N N N 10.758 29.801 87.252 0.839  2.397  0.435  O03 4IM 8  
4IM O04 O3  O 0 1 N N N N N N 8.779  31.098 85.601 -1.980 2.499  0.290  O04 4IM 9  
4IM O05 O4  O 0 1 N N N N N N 8.408  29.961 83.029 -3.407 0.136  0.890  O05 4IM 10 
4IM O06 O5  O 0 1 N N N N N N 10.571 28.871 81.725 -2.155 -2.330 0.315  O06 4IM 11 
4IM O01 O6  O 0 1 N N N N N N 12.694 27.796 83.300 0.664  -2.432 0.460  O01 4IM 12 
4IM P02 P1  P 0 1 N N N N N N 13.438 27.157 86.643 3.463  -0.115 0.700  P02 4IM 13 
4IM P01 P2  P 0 1 N N N N N N 14.108 28.157 82.576 1.154  -3.562 -0.577 P01 4IM 14 
4IM P05 P3  P 0 1 N N N N N N 7.679  30.538 81.712 -4.780 0.181  0.050  P05 4IM 15 
4IM O22 O7  O 0 1 N N N N N N 12.430 26.076 86.324 4.704  -0.298 -0.310 O22 4IM 16 
4IM O21 O8  O 0 1 N N N N N N 13.601 27.398 88.128 3.636  1.260  1.520  O21 4IM 17 
4IM O23 O9  O 0 1 N N N N N N 14.754 26.970 85.919 3.425  -1.252 1.646  O23 4IM 18 
4IM O11 O10 O 0 1 N N N N N N 14.896 29.044 83.520 -0.127 -4.238 -1.280 O11 4IM 19 
4IM O12 O11 O 0 1 N N N N N N 13.677 28.867 81.316 2.014  -2.943 -1.610 O12 4IM 20 
4IM O13 O12 O 0 1 N N N N N N 14.793 26.822 82.331 1.989  -4.689 0.213  O13 4IM 21 
4IM O51 O13 O 0 1 N N N N N N 6.280  29.992 81.551 -6.021 0.364  1.059  O51 4IM 22 
4IM O52 O14 O 0 1 N N N N N N 8.635  30.050 80.635 -4.741 1.319  -0.896 O52 4IM 23 
4IM O53 O15 O 0 1 N N N N N N 7.722  32.034 81.913 -4.953 -1.193 -0.770 O53 4IM 24 
4IM P03 P4  P 0 1 N N N N N N 11.214 31.064 88.186 1.410  3.477  -0.614 P03 4IM 25 
4IM O33 O16 O 0 1 N N N N N N 12.666 31.389 87.916 2.102  4.689  0.188  O33 4IM 26 
4IM O32 O17 O 0 1 N N N N N N 10.974 30.588 89.603 2.499  2.774  -1.570 O32 4IM 27 
4IM O31 O18 O 0 1 N N N N N N 10.281 32.153 87.708 0.297  4.002  -1.437 O31 4IM 28 
4IM H1  H1  H 0 1 N N N N N N 8.921  29.030 85.438 -1.187 1.310  1.782  H1  4IM 29 
4IM H2  H2  H 0 1 N N N N N N 11.420 30.774 85.525 -0.039 1.253  -1.046 H2  4IM 30 
4IM H3  H3  H 0 1 N N N N N N 10.952 27.765 85.454 0.918  -0.018 1.559  H3  4IM 31 
4IM H4  H4  H 0 1 N N N N N N 12.258 29.812 83.632 -0.129 -1.243 -1.032 H4  4IM 32 
4IM H5  H5  H 0 1 N N N N N N 9.938  27.849 83.434 -1.278 -1.187 1.795  H5  4IM 33 
4IM H6  H6  H 0 1 N N N N N N 10.231 30.898 83.406 -2.234 0.084  -0.810 H6  4IM 34 
4IM H7  H7  H 0 1 N N N N N N 9.244  31.505 86.322 -2.863 2.599  0.670  H7  4IM 35 
4IM H8  H8  H 0 1 N N N N N N 9.812  29.324 81.378 -3.043 -2.362 0.697  H8  4IM 36 
4IM H9  H9  H 0 1 N N N N N N 12.811 25.458 85.712 5.566  -0.333 0.128  H9  4IM 37 
4IM H10 H10 H 0 1 N N N N N N 14.524 27.389 88.351 3.669  2.049  0.962  H10 4IM 38 
4IM H11 H11 H 0 1 N N N N N N 14.982 29.912 83.143 -0.737 -4.663 -0.661 H11 4IM 39 
4IM H12 H12 H 0 1 N N N N N N 14.836 26.654 81.397 2.317  -5.403 -0.351 H12 4IM 40 
4IM H13 H13 H 0 1 N N N N N N 6.246  29.428 80.788 -6.882 0.400  0.621  H13 4IM 41 
4IM H14 H14 H 0 1 N N N N N N 8.355  32.416 81.316 -4.986 -1.982 -0.212 H14 4IM 42 
4IM H15 H15 H 0 1 N N N N N N 12.727 32.234 87.487 2.469  5.379  -0.382 H15 4IM 43 
4IM H16 H16 H 0 1 N N N N N N 10.247 31.069 89.980 3.258  2.407  -1.097 H16 4IM 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4IM O52 P05 DOUB N N 1  
4IM O12 P01 DOUB N N 2  
4IM O51 P05 SING N N 3  
4IM P05 O53 SING N N 4  
4IM P05 O05 SING N N 5  
4IM O06 C06 SING N N 6  
4IM O13 P01 SING N N 7  
4IM P01 O01 SING N N 8  
4IM P01 O11 SING N N 9  
4IM O05 C05 SING N N 10 
4IM C06 C05 SING N N 11 
4IM C06 C01 SING N N 12 
4IM O01 C01 SING N N 13 
4IM C05 C04 SING N N 14 
4IM C01 C02 SING N N 15 
4IM C04 O04 SING N N 16 
4IM C04 C03 SING N N 17 
4IM C02 C03 SING N N 18 
4IM C02 O02 SING N N 19 
4IM C03 O03 SING N N 20 
4IM O23 P02 DOUB N N 21 
4IM O02 P02 SING N N 22 
4IM O22 P02 SING N N 23 
4IM P02 O21 SING N N 24 
4IM O03 P03 SING N N 25 
4IM O31 P03 DOUB N N 26 
4IM O33 P03 SING N N 27 
4IM P03 O32 SING N N 28 
4IM C04 H1  SING N N 29 
4IM C03 H2  SING N N 30 
4IM C02 H3  SING N N 31 
4IM C01 H4  SING N N 32 
4IM C06 H5  SING N N 33 
4IM C05 H6  SING N N 34 
4IM O04 H7  SING N N 35 
4IM O06 H8  SING N N 36 
4IM O22 H9  SING N N 37 
4IM O21 H10 SING N N 38 
4IM O11 H11 SING N N 39 
4IM O13 H12 SING N N 40 
4IM O51 H13 SING N N 41 
4IM O53 H14 SING N N 42 
4IM O33 H15 SING N N 43 
4IM O32 H16 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4IM InChI            InChI                1.06  "InChI=1S/C6H16O18P4/c7-1-3(21-25(9,10)11)2(8)5(23-27(15,16)17)6(24-28(18,19)20)4(1)22-26(12,13)14/h1-8H,(H2,9,10,11)(H2,12,13,14)(H2,15,16,17)(H2,18,19,20)/t1-,2+,3-,4+,5-,6-" 
4IM InChIKey         InChI                1.06  CIPFCGZLFXVXBG-FAEUDGQSSA-N                                                                                                                                                      
4IM SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@H](O[P](O)(O)=O)[C@@H](O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O"                                                                                  
4IM SMILES           CACTVS               3.385 "O[CH]1[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O"                                                                                           
4IM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[C@H]1([C@H](C([C@H]([C@@H](C1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O"                                                                                                  
4IM SMILES           "OpenEye OEToolkits" 2.0.7 "C1(C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           4IM 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{R},2~{S},4~{R},5~{S})-2,4-bis(oxidanyl)-3,5,6-triphosphonooxy-cyclohexyl] dihydrogen phosphate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      4IM 
_pdbx_chem_comp_synonyms.name         "[(1R,2S,4R,5S)-2,4-bis(oxidanyl)-3,5,6-triphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4IM "Create component" 2023-07-12 PDBE 
4IM "Initial release"  2024-02-28 RCSB 
# 
