data_5TM
#

_chem_comp.id                                   5TM
_chem_comp.name                                 "[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-2,5-bis(oxidanyl)-4-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O10 S2"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-2,5-bis(oxidanyl)-4-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-11-28
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.283
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5TM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EBZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5TM
_pdbx_chem_comp_synonyms.name        "[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-2,5-bis(oxidanyl)-4-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5TM  C1     C1     C  0  1  N  N  S   98.365  95.469  -36.651  -0.453  -1.785   0.396  C1     5TM   1  
5TM  C2     C2     C  0  1  N  N  R   98.524  94.387  -37.734   0.331  -0.563  -0.090  C2     5TM   2  
5TM  C3     C3     C  0  1  N  N  S   98.482  93.012  -37.073  -0.483   0.703   0.196  C3     5TM   3  
5TM  C4     C4     C  0  1  N  N  R   97.199  92.856  -36.253  -1.851   0.581  -0.483  C4     5TM   4  
5TM  C5     C5     C  0  1  N  N  R   97.029  94.016  -35.262  -2.550  -0.685   0.019  C5     5TM   5  
5TM  C6     C6     C  0  1  N  N  N   98.024  94.024  -34.104  -3.892  -0.846  -0.699  C6     5TM   6  
5TM  O2     O2     O  0  1  N  N  N   97.470  94.500  -38.687   1.581  -0.492   0.598  O2     5TM   7  
5TM  O3     O3     O  0  1  N  N  N   99.616  92.844  -36.230   0.207   1.842  -0.321  O3     5TM   8  
5TM  O4     O4     O  0  1  N  N  N   96.078  92.810  -37.124  -2.646   1.724  -0.163  O4     5TM   9  
5TM  O5     O5     O  0  1  N  N  N   97.122  95.294  -35.952  -1.727  -1.821  -0.251  O5     5TM  10  
5TM  O6     O6     O  0  1  N  N  N   97.338  93.946  -32.855  -4.596  -1.961  -0.149  O6     5TM  11  
5TM  O1S    O1S    O  0  1  N  N  N   98.811  95.855  -40.258   3.121  -0.171  -1.281  O1S    5TM  12  
5TM  O2S    O2S    O  0  1  N  N  N   98.821  93.401  -40.453   3.841  -1.147   0.740  O2S    5TM  13  
5TM  O3S    O3S    O  0  1  N  N  N   96.808  94.679  -41.056   2.223  -2.293  -0.782  O3S    5TM  14  
5TM  O3X    O3X    O  0  1  N  N  N  101.508  91.424  -35.558   0.865   4.130  -0.240  O3X    5TM  15  
5TM  S      S      S  0  1  N  N  N   97.979  94.608  -40.112   2.740  -1.125  -0.158  S      5TM  16  
5TM  "S'"   "S'"   S  0  1  N  N  N  100.381  91.583  -36.546   0.047   3.098   0.523  "S'"   5TM  17  
5TM  O1     O1     O  0  1  N  Y  N   98.376  96.732  -37.224  -0.639  -1.699   1.811  O1     5TM  18  
5TM  H1     H1     H  0  1  N  N  N   99.200  95.368  -35.942   0.102  -2.692   0.157  H1     5TM  19  
5TM  H2     H2     H  0  1  N  N  N   99.500  94.518  -38.225   0.508  -0.647  -1.162  H2     5TM  20  
5TM  H3     H3     H  0  1  N  N  N   98.486  92.246  -37.862  -0.619   0.814   1.271  H3     5TM  21  
5TM  H4     H4     H  0  1  N  N  N   97.266  91.919  -35.680  -1.718   0.520  -1.563  H4     5TM  22  
5TM  H5     H5     H  0  1  N  N  N   96.021  93.931  -34.829  -2.720  -0.605   1.092  H5     5TM  23  
5TM  H61    H6     H  0  1  N  N  N   98.699  93.161  -34.201  -4.485   0.059  -0.568  H61    5TM  24  
5TM  H62    H7     H  0  1  N  N  N   98.611  94.954  -34.137  -3.717  -1.015  -1.762  H62    5TM  25  
5TM  HO4    H8     H  0  1  N  Y  N   95.283  92.713  -36.613  -3.528   1.714  -0.561  HO4    5TM  26  
5TM  HO6    H9     H  0  1  N  Y  N   97.970  93.952  -32.145  -5.457  -2.122  -0.558  HO6    5TM  27  
5TM  H10    H10    H  0  1  N  N  N  101.992  90.630  -35.754   0.872   5.007   0.168  H10    5TM  28  
5TM  HO1    H11    H  0  1  N  Y  N   98.277  97.389  -36.545  -1.130  -2.442   2.188  HO1    5TM  29  
5TM  H12    H12    H  0  1  N  N  N   98.421  96.421  -40.914   3.855  -0.481  -1.828  H12    5TM  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5TM  O3S    S    DOUB  N  N   1  
5TM  O2S    S    DOUB  N  N   2  
5TM  O1S    S    SING  N  N   3  
5TM  S      O2   SING  N  N   4  
5TM  O2     C2   SING  N  N   5  
5TM  C2     C3   SING  N  N   6  
5TM  C2     C1   SING  N  N   7  
5TM  O4     C4   SING  N  N   8  
5TM  C3     C4   SING  N  N   9  
5TM  C3     O3   SING  N  N  10  
5TM  C1     O5   SING  N  N  11  
5TM  "S'"   O3   SING  N  N  12  
5TM  "S'"   O3X  SING  N  N  13  
5TM  C4     C5   SING  N  N  14  
5TM  O5     C5   SING  N  N  15  
5TM  C5     C6   SING  N  N  16  
5TM  C6     O6   SING  N  N  17  
5TM  C1     O1   SING  N  N  18  
5TM  C1     H1   SING  N  N  19  
5TM  C2     H2   SING  N  N  20  
5TM  C3     H3   SING  N  N  21  
5TM  C4     H4   SING  N  N  22  
5TM  C5     H5   SING  N  N  23  
5TM  C6     H61  SING  N  N  24  
5TM  C6     H62  SING  N  N  25  
5TM  O4     HO4  SING  N  N  26  
5TM  O6     HO6  SING  N  N  27  
5TM  O3X    H10  SING  N  N  28  
5TM  O1     HO1  SING  N  N  29  
5TM  O1S    H12  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5TM  InChI             InChI                 1.03   "InChI=1S/C6H12O10S2/c7-1-2-3(8)4(15-17-10)5(6(9)14-2)16-18(11,12)13/h2-10H,1H2,(H,11,12,13)/t2-,3-,4+,5-,6+/m1/s1"  
5TM  InChIKey          InChI                 1.03   AAAMJICHKUQUOZ-DVKNGEFBSA-N  
5TM  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O)[C@H](O[S](O)(=O)=O)[C@@H](OSO)[C@@H]1O"  
5TM  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](OSO)[CH]1O"  
5TM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OS(=O)(=O)O)OSO)O)O"  
5TM  SMILES            "OpenEye OEToolkits"  2.0.4  "C(C1C(C(C(C(O1)O)OS(=O)(=O)O)OSO)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          5TM
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-2,5-bis(oxidanyl)-4-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
#
_pdbx_chem_comp_related.comp_id            5TM
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  5TM  C1   GLC  C1   "Carbohydrate core"  
 2  5TM  C2   GLC  C2   "Carbohydrate core"  
 3  5TM  C3   GLC  C3   "Carbohydrate core"  
 4  5TM  C4   GLC  C4   "Carbohydrate core"  
 5  5TM  C5   GLC  C5   "Carbohydrate core"  
 6  5TM  C6   GLC  C6   "Carbohydrate core"  
 7  5TM  O1   GLC  O1   "Carbohydrate core"  
 8  5TM  O2   GLC  O2   "Carbohydrate core"  
 9  5TM  O3   GLC  O3   "Carbohydrate core"  
10  5TM  O4   GLC  O4   "Carbohydrate core"  
11  5TM  O5   GLC  O5   "Carbohydrate core"  
12  5TM  O6   GLC  O6   "Carbohydrate core"  
13  5TM  H1   GLC  H1   "Carbohydrate core"  
14  5TM  HO1  GLC  HO1  "Carbohydrate core"  
15  5TM  H2   GLC  H2   "Carbohydrate core"  
16  5TM  H3   GLC  H3   "Carbohydrate core"  
17  5TM  H4   GLC  H4   "Carbohydrate core"  
18  5TM  H5   GLC  H5   "Carbohydrate core"  
19  5TM  H61  GLC  H61  "Carbohydrate core"  
20  5TM  H62  GLC  H62  "Carbohydrate core"  
21  5TM  HO4  GLC  HO4  "Carbohydrate core"  
22  5TM  HO6  GLC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5TM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
5TM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5TM  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
5TM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5TM  "Create component"          2015-11-28  RCSB  
5TM  "Initial release"           2016-11-02  RCSB  
5TM  "Other modification"        2020-07-03  RCSB  
5TM  "Modify parent residue"     2020-07-17  RCSB  
5TM  "Modify name"               2020-07-17  RCSB  
5TM  "Modify synonyms"           2020-07-17  RCSB  
5TM  "Modify internal type"      2020-07-17  RCSB  
5TM  "Modify linking type"       2020-07-17  RCSB  
5TM  "Modify atom id"            2020-07-17  RCSB  
5TM  "Modify component atom id"  2020-07-17  RCSB  
5TM  "Modify leaving atom flag"  2020-07-17  RCSB  
##
