data_6DM
#

_chem_comp.id                                   6DM
_chem_comp.name                                 6-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H22 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "alpha 1,6 mannobiose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-02-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       342.296
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6DM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5I4F
_chem_comp.pdbx_subcomponent_list               "MAN MAN"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
6DM  "C1'"  C6   C  0  1  N  N  S  -43.218   -8.562  -2.059  -2.710   0.356   1.777  MAN  1  C1   polymer  1   1  
6DM  "C2'"  C5   C  0  1  N  N  S  -43.144   -8.824  -0.561  -4.009   0.654   1.025  MAN  1  C2   polymer  1   2  
6DM  "C3'"  C4   C  0  1  N  N  S  -41.805   -8.882   0.001  -4.231  -0.424  -0.041  MAN  1  C3   polymer  1   3  
6DM  "C4'"  C3   C  0  1  N  N  S  -40.885   -9.511  -0.954  -3.016  -0.463  -0.973  MAN  1  C4   polymer  1   4  
6DM  "C5'"  C2   C  0  1  N  N  R  -40.734   -8.545  -2.073  -1.755  -0.717  -0.143  MAN  1  C5   polymer  1   5  
6DM  "C6'"  C1   C  0  1  N  N  N  -39.784   -9.258  -2.950  -0.529  -0.698  -1.059  MAN  1  C6   polymer  1   6  
6DM  "O1'"  O6   O  0  1  N  N  N  -44.047   -7.488  -2.377  -2.825  -0.900   2.448  MAN  1  O1   polymer  1   7  
6DM  "O2'"  O5   O  0  1  N  N  N  -43.644  -10.140  -0.305  -3.915   1.934   0.397  MAN  1  O2   polymer  1   8  
6DM  "O3'"  O4   O  0  1  N  N  N  -41.836   -9.667   1.223  -5.403  -0.114  -0.798  MAN  1  O3   polymer  1   9  
6DM  "O4'"  O3   O  0  1  N  N  N  -39.604   -9.972  -0.427  -3.179  -1.513  -1.928  MAN  1  O4   polymer  1  10  
6DM  "O5'"  O2   O  0  1  N  N  N  -41.967   -8.544  -2.853  -1.625   0.303   0.849  MAN  1  O5   polymer  1  11  
6DM  "O6'"  O1   O  0  1  N  N  N  -40.424  -10.541  -3.090   0.633  -1.050  -0.306  MAN  1  O6   polymer  1  12  
6DM  C1     C7   C  0  1  N  N  S  -40.444  -10.896  -4.398   1.840  -1.062  -1.072  MAN  2  C1   polymer  1  13  
6DM  C2     C8   C  0  1  N  N  S  -40.638  -12.413  -4.395   2.965  -1.686  -0.242  MAN  2  C2   polymer  1  14  
6DM  C3     C9   C  0  1  N  N  S  -39.445  -13.098  -3.861   3.211  -0.824   1.000  MAN  2  C3   polymer  1  15  
6DM  C4     C10  C  0  1  N  N  S  -38.223  -12.667  -4.521   3.539   0.606   0.558  MAN  2  C4   polymer  1  16  
6DM  C5     C11  C  0  1  N  N  R  -38.023  -11.160  -4.344   2.391   1.141  -0.303  MAN  2  C5   polymer  1  17  
6DM  C6     C12  C  0  1  N  N  N  -36.781  -10.748  -5.046   2.738   2.547  -0.797  MAN  2  C6   polymer  1  18  
6DM  O2     O7   O  0  1  N  N  N  -41.026  -12.977  -5.650   4.159  -1.747  -1.026  MAN  2  O2   polymer  1  19  
6DM  O3     O8   O  0  1  N  N  N  -39.626  -14.555  -4.003   4.308  -1.359   1.743  MAN  2  O3   polymer  1  20  
6DM  O4     O9   O  0  1  N  N  N  -37.125  -13.335  -3.867   3.699   1.437   1.710  MAN  2  O4   polymer  1  21  
6DM  O5     O10  O  0  1  N  N  N  -39.149  -10.449  -4.927   2.195   0.277  -1.423  MAN  2  O5   polymer  1  22  
6DM  O6     O11  O  0  1  N  N  N  -36.905  -11.092  -6.398   1.621   3.093  -1.502  MAN  2  O6   polymer  1  23  
6DM  H10    H10  H  0  1  N  N  N  -43.753   -9.444  -2.442  -2.525   1.143   2.508  MAN  1  H1   polymer  1  24  
6DM  H8     H8   H  0  1  N  N  N  -43.747   -8.072  -0.031  -4.844   0.652   1.725  MAN  1  H2   polymer  1  25  
6DM  H6     H6   H  0  1  N  N  N  -41.456   -7.863   0.226  -4.354  -1.394   0.441  MAN  1  H3   polymer  1  26  
6DM  H4     H4   H  0  1  N  N  N  -41.401  -10.392  -1.364  -2.925   0.491  -1.493  MAN  1  H4   polymer  1  27  
6DM  H3     H3   H  0  1  N  N  N  -40.394   -7.547  -1.759  -1.830  -1.689   0.343  MAN  1  H5   polymer  1  28  
6DM  H1     H1   H  0  1  N  N  N  -38.795   -9.352  -2.477  -0.669  -1.415  -1.868  MAN  1  H61  polymer  1  29  
6DM  H2     H2   H  0  1  N  N  N  -39.679   -8.754  -3.922  -0.403   0.301  -1.477  MAN  1  H62  polymer  1  30  
6DM  H11    H11  H  0  1  N  N  N  -44.837   -7.531  -1.851  -2.036  -1.153   2.947  MAN  1  HO1  polymer  1  31  
6DM  H9     H9   H  0  1  N  N  N  -43.604  -10.319   0.627  -3.770   2.665   1.013  MAN  1  HO2  polymer  1  32  
6DM  H7     H7   H  0  1  N  N  N  -42.431   -9.263   1.844  -6.212  -0.066  -0.269  MAN  1  HO3  polymer  1  33  
6DM  H5     H5   H  0  1  N  N  N  -39.755  -10.585   0.283  -3.963  -1.419  -2.486  MAN  1  HO4  polymer  1  34  
6DM  H12    H12  H  0  1  N  N  N  -41.269  -10.419  -4.947   1.689  -1.648  -1.979  MAN  2  H1   polymer  1  35  
6DM  H13    H13  H  0  1  N  N  N  -41.455  -12.611  -3.686   2.677  -2.692   0.064  MAN  2  H2   polymer  1  36  
6DM  H15    H15  H  0  1  N  N  N  -39.364  -12.864  -2.789   2.317  -0.817   1.622  MAN  2  H3   polymer  1  37  
6DM  H17    H17  H  0  1  N  N  N  -38.251  -12.914  -5.593   4.461   0.607  -0.023  MAN  2  H4   polymer  1  38  
6DM  H19    H19  H  0  1  N  N  N  -37.940  -10.929  -3.272   1.478   1.180   0.292  MAN  2  H5   polymer  1  39  
6DM  H20    H20  H  0  1  N  N  N  -35.916  -11.268  -4.608   2.975   3.184   0.055  MAN  2  H61  polymer  1  40  
6DM  H21    H21  H  0  1  N  N  N  -36.643   -9.661  -4.950   3.599   2.497  -1.463  MAN  2  H62  polymer  1  41  
6DM  H14    H14  H  0  1  N  N  N  -41.124  -13.918  -5.558   4.074  -2.274  -1.832  MAN  2  HO2  polymer  1  42  
6DM  H16    H16  H  0  1  N  N  N  -40.428  -14.819  -3.567   4.170  -2.266   2.049  MAN  2  HO3  polymer  1  43  
6DM  H18    H18  H  0  1  N  N  N  -37.224  -14.275  -3.962   4.411   1.156   2.302  MAN  2  HO4  polymer  1  44  
6DM  H22    H22  H  0  1  N  N  N  -36.118  -10.835  -6.864   1.769   3.985  -1.845  MAN  2  HO6  polymer  1  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6DM  O6     C6     SING  N  N   1  
6DM  O2     C2     SING  N  N   2  
6DM  C6     C5     SING  N  N   3  
6DM  O5     C1     SING  N  N   4  
6DM  O5     C5     SING  N  N   5  
6DM  C4     C5     SING  N  N   6  
6DM  C4     O4     SING  N  N   7  
6DM  C4     C3     SING  N  N   8  
6DM  C1     C2     SING  N  N   9  
6DM  C1     "O6'"  SING  N  N  10  
6DM  C2     C3     SING  N  N  11  
6DM  O3     C3     SING  N  N  12  
6DM  "O6'"  "C6'"  SING  N  N  13  
6DM  "C6'"  "C5'"  SING  N  N  14  
6DM  "O5'"  "C5'"  SING  N  N  15  
6DM  "O5'"  "C1'"  SING  N  N  16  
6DM  "O1'"  "C1'"  SING  N  N  17  
6DM  "C5'"  "C4'"  SING  N  N  18  
6DM  "C1'"  "C2'"  SING  N  N  19  
6DM  "C4'"  "O4'"  SING  N  N  20  
6DM  "C4'"  "C3'"  SING  N  N  21  
6DM  "C2'"  "O2'"  SING  N  N  22  
6DM  "C2'"  "C3'"  SING  N  N  23  
6DM  "C3'"  "O3'"  SING  N  N  24  
6DM  "C6'"  H1     SING  N  N  25  
6DM  "C6'"  H2     SING  N  N  26  
6DM  "C5'"  H3     SING  N  N  27  
6DM  "C4'"  H4     SING  N  N  28  
6DM  "O4'"  H5     SING  N  N  29  
6DM  "C3'"  H6     SING  N  N  30  
6DM  "O3'"  H7     SING  N  N  31  
6DM  "C2'"  H8     SING  N  N  32  
6DM  "O2'"  H9     SING  N  N  33  
6DM  "C1'"  H10    SING  N  N  34  
6DM  "O1'"  H11    SING  N  N  35  
6DM  C1     H12    SING  N  N  36  
6DM  C2     H13    SING  N  N  37  
6DM  O2     H14    SING  N  N  38  
6DM  C3     H15    SING  N  N  39  
6DM  O3     H16    SING  N  N  40  
6DM  C4     H17    SING  N  N  41  
6DM  O4     H18    SING  N  N  42  
6DM  C5     H19    SING  N  N  43  
6DM  C6     H20    SING  N  N  44  
6DM  C6     H21    SING  N  N  45  
6DM  O6     H22    SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6DM  SMILES            ACDLabs               12.01  "C(C1C(O)C(O)C(O)C(O1)O)OC2C(C(O)C(C(O2)CO)O)O"  
6DM  InChI             InChI                 1.03   "InChI=1S/C12H22O11/c13-1-3-5(14)8(17)10(19)12(23-3)21-2-4-6(15)7(16)9(18)11(20)22-4/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9+,10+,11+,12+/m1/s1"  
6DM  InChIKey          InChI                 1.03   DLRVVLDZNNYCBX-ONPLHCRPSA-N  
6DM  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](OC[C@H]2O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]2O)[C@@H](O)[C@@H](O)[C@@H]1O"  
6DM  SMILES            CACTVS                3.385  "OC[CH]1O[CH](OC[CH]2O[CH](O)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
6DM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)OC[C@@H]2[C@H]([C@@H]([C@@H]([C@H](O2)O)O)O)O)O)O)O)O"  
6DM  SMILES            "OpenEye OEToolkits"  2.0.4  "C(C1C(C(C(C(O1)OCC2C(C(C(C(O2)O)O)O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6DM  "SYSTEMATIC NAME"  ACDLabs               12.01  6-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose  
6DM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]oxane-2,3,4,5-tetrol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6DM  "Create component"               2016-02-19  RCSB  
6DM  "Modify model coordinates code"  2016-03-07  PDBJ  
6DM  "Modify name"                    2016-03-07  PDBJ  
6DM  "Initial release"                2016-12-21  RCSB  
6DM  "Other modification"             2020-07-03  RCSB  
6DM  "Obsolete component"             2020-07-17  RCSB  
##
