data_6XM
# 
_chem_comp.id                                    6XM 
_chem_comp.name                                  "8,12-bis(2-morpholinoethyl)-8H-benzo[ij]xantheno[1,9,8-cdef][2,7]naphthyridin-12-iumhexafluorophosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H34 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-15 
_chem_comp.pdbx_modified_date                    2018-02-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.627 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6XM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LIG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6XM C1     C1  C 0 1 Y N N 19.814 25.841 24.287 -2.368 4.178  0.485  C1     6XM 1  
6XM C2     C2  C 0 1 Y N N 20.015 24.987 25.366 -3.454 3.542  1.055  C2     6XM 2  
6XM CA     C3  C 0 1 N N N 20.892 20.908 24.482 -3.666 -0.727 0.928  CA     6XM 3  
6XM CB     C4  C 0 1 N N N 19.355 20.833 24.633 -4.165 -1.110 -0.466 CB     6XM 4  
6XM CC1    C5  C 0 1 N N N 17.491 19.256 25.095 -5.811 -2.446 -1.638 CC1    6XM 5  
6XM CD1    C6  C 0 1 N N N 16.621 20.011 26.130 -7.093 -3.263 -1.457 CD1    6XM 6  
6XM O1     O1  O 0 1 N N N 17.094 19.728 27.475 -8.116 -2.422 -0.917 O1     6XM 7  
6XM CD2    C7  C 0 1 N N N 18.487 20.091 27.684 -7.773 -1.832 0.340  CD2    6XM 8  
6XM CC2    C8  C 0 1 N N N 19.388 19.344 26.669 -6.497 -1.001 0.177  CC2    6XM 9  
6XM N2     N1  N 0 1 N N N 18.943 19.548 25.257 -5.424 -1.858 -0.348 N2     6XM 10 
6XM N1     N2  N 0 1 N N N 21.366 22.024 23.630 -2.410 0.018  0.810  N1     6XM 11 
6XM C6     C9  C 0 1 Y N N 20.929 23.308 23.868 -2.417 1.413  0.690  C6     6XM 12 
6XM C7     C10 C 0 1 Y N N 20.743 24.186 22.801 -1.351 2.049  0.072  C7     6XM 13 
6XM C3     C11 C 0 1 Y N N 20.593 23.737 25.156 -3.484 2.164  1.165  C3     6XM 14 
6XM C8     C12 C 0 1 Y N N 20.184 25.445 23.008 -1.302 3.433  -0.003 C8     6XM 15 
6XM O      O2  O 0 1 N N N 19.987 26.296 21.941 -0.214 4.051  -0.530 O      6XM 16 
6XM "C8'"  C13 C 0 1 Y N N 20.402 25.931 20.677 0.982  3.409  -0.527 "C8'"  6XM 17 
6XM "C1'"  C14 C 0 1 Y N N 20.234 26.815 19.621 2.168  4.131  -0.564 "C1'"  6XM 18 
6XM "C2'"  C15 C 0 1 Y N N 20.693 26.488 18.353 3.383  3.472  -0.541 "C2'"  6XM 19 
6XM "C3'"  C16 C 0 1 Y N N 21.327 25.267 18.153 3.431  2.092  -0.471 "C3'"  6XM 20 
6XM "C6'"  C17 C 0 1 Y N N 21.487 24.347 19.198 2.250  1.362  -0.435 "C6'"  6XM 21 
6XM "C7'"  C18 C 0 1 Y N N 21.010 24.697 20.463 1.033  2.024  -0.494 "C7'"  6XM 22 
6XM C11    C19 C 0 1 N N S 21.155 23.822 21.528 -0.248 1.237  -0.550 C11    6XM 23 
6XM C10    C20 C 0 1 Y N N 21.822 22.624 21.344 -0.089 -0.071 0.172  C10    6XM 24 
6XM C9     C21 C 0 1 Y N N 22.009 21.771 22.439 -1.182 -0.653 0.799  C9     6XM 25 
6XM C4     C22 C 0 1 Y N N 22.831 20.651 22.283 -1.045 -1.889 1.417  C4     6XM 26 
6XM C5     C23 C 0 1 Y N N 23.434 20.378 21.060 0.186  -2.519 1.434  C5     6XM 27 
6XM "C4'"  C24 C 0 1 Y N N 23.187 21.201 19.965 1.286  -1.918 0.851  "C4'"  6XM 28 
6XM "C9'"  C25 C 0 1 Y N N 22.359 22.325 20.085 1.155  -0.683 0.230  "C9'"  6XM 29 
6XM "N1'"  N3  N 0 1 N N N 22.058 23.109 18.991 2.273  -0.031 -0.302 "N1'"  6XM 30 
6XM "CA'"  C26 C 0 1 N N N 22.110 22.542 17.629 3.453  -0.796 -0.714 "CA'"  6XM 31 
6XM "CB'"  C27 C 0 1 N N N 23.393 22.907 16.856 4.415  -0.926 0.469  "CB'"  6XM 32 
6XM "N2'"  N4  N 0 1 N N N 23.153 22.839 15.393 5.597  -1.693 0.056  "N2'"  6XM 33 
6XM "CC2'" C28 C 0 0 N N N 22.810 21.483 14.863 6.430  -2.043 1.216  "CC2'" 6XM 34 
6XM "CD2'" C29 C 0 0 N N N 24.065 20.598 14.658 7.616  -2.891 0.749  "CD2'" 6XM 35 
6XM "O1'"  O3  O 0 1 N N N 25.046 21.296 13.844 8.349  -2.170 -0.246 "O1'"  6XM 36 
6XM "CD1'" C30 C 0 0 N N N 25.457 22.575 14.405 7.568  -1.813 -1.390 "CD1'" 6XM 37 
6XM "CC1'" C31 C 0 0 N N N 24.220 23.488 14.581 6.381  -0.955 -0.945 "CC1'" 6XM 38 
6XM H1     H1  H 0 1 N N N 19.370 26.813 24.444 -2.349 5.255  0.414  H1     6XM 39 
6XM H2     H2  H 0 1 N N N 19.725 25.291 26.361 -4.287 4.126  1.419  H2     6XM 40 
6XM HA1    H3  H 0 1 N N N 21.241 19.964 24.039 -4.413 -0.105 1.423  HA1    6XM 41 
6XM HA2    H4  H 0 1 N N N 21.331 21.028 25.483 -3.499 -1.630 1.516  HA2    6XM 42 
6XM HB2    H5  H 0 1 N N N 19.015 21.666 25.266 -4.332 -0.208 -1.054 HB2    6XM 43 
6XM HB1    H6  H 0 1 N N N 18.891 20.915 23.639 -3.418 -1.732 -0.961 HB1    6XM 44 
6XM HC2    H7  H 0 1 N N N 17.180 19.558 24.084 -5.012 -3.097 -1.996 HC2    6XM 45 
6XM HC1    H8  H 0 1 N N N 17.331 18.175 25.220 -5.985 -1.651 -2.363 HC1    6XM 46 
6XM HD2    H9  H 0 1 N N N 16.686 21.093 25.941 -7.415 -3.654 -2.422 HD2    6XM 47 
6XM HD1    H10 H 0 1 N N N 15.575 19.684 26.035 -6.904 -4.090 -0.773 HD1    6XM 48 
6XM HD3    H11 H 0 1 N N N 18.785 19.817 28.707 -8.586 -1.189 0.675  HD3    6XM 49 
6XM HD4    H12 H 0 1 N N N 18.605 21.176 27.546 -7.604 -2.618 1.077  HD4    6XM 50 
6XM HC3    H13 H 0 1 N N N 19.360 18.268 26.897 -6.683 -0.183 -0.519 HC3    6XM 51 
6XM HC4    H14 H 0 1 N N N 20.419 19.714 26.772 -6.201 -0.596 1.144  HC4    6XM 52 
6XM H3     H16 H 0 1 N N N 20.784 23.090 26.000 -4.333 1.675  1.618  H3     6XM 53 
6XM "H1'"  H17 H 0 1 N N N 19.743 27.763 19.787 2.141  5.210  -0.611 "H1'"  6XM 54 
6XM "H2'"  H18 H 0 1 N N N 20.559 27.175 17.530 4.301  4.039  -0.579 "H2'"  6XM 55 
6XM "H3'"  H19 H 0 1 N N N 21.704 25.022 17.171 4.383  1.584  -0.445 "H3'"  6XM 56 
6XM H7     H20 H 0 1 N N N 20.184 23.351 21.314 -0.498 1.031  -1.591 H7     6XM 57 
6XM H4     H21 H 0 1 N N N 22.999 19.991 23.121 -1.898 -2.357 1.884  H4     6XM 58 
6XM H5     H22 H 0 1 N N N 24.093 19.528 20.960 0.288  -3.485 1.905  H5     6XM 59 
6XM "H4'"  H23 H 0 1 N N N 23.639 20.971 19.012 2.247  -2.409 0.878  "H4'"  6XM 60 
6XM "HA2'" H24 H 0 0 N N N 21.245 22.917 17.063 3.145  -1.788 -1.043 "HA2'" 6XM 61 
6XM "HA1'" H25 H 0 0 N N N 22.051 21.446 17.706 3.952  -0.280 -1.533 "HA1'" 6XM 62 
6XM "HB1'" H26 H 0 0 N N N 24.192 22.200 17.125 4.722  0.066  0.798  "HB1'" 6XM 63 
6XM "HB2'" H27 H 0 0 N N N 23.700 23.928 17.126 3.915  -1.442 1.289  "HB2'" 6XM 64 
6XM "HC3'" H29 H 0 0 N N N 22.298 21.600 13.897 6.797  -1.132 1.688  "HC3'" 6XM 65 
6XM "HC4'" H30 H 0 0 N N N 22.138 20.984 15.576 5.836  -2.611 1.932  "HC4'" 6XM 66 
6XM "HD3'" H31 H 0 0 N N N 23.773 19.665 14.154 8.267  -3.104 1.596  "HD3'" 6XM 67 
6XM "HD4'" H32 H 0 0 N N N 24.507 20.363 15.637 7.251  -3.826 0.325  "HD4'" 6XM 68 
6XM "HD2'" H33 H 0 0 N N N 25.932 22.410 15.383 8.184  -1.248 -2.089 "HD2'" 6XM 69 
6XM "HD1'" H34 H 0 0 N N N 26.175 23.058 13.726 7.201  -2.717 -1.876 "HD1'" 6XM 70 
6XM "HC2'" H35 H 0 0 N N N 24.533 24.415 15.083 5.752  -0.729 -1.806 "HC2'" 6XM 71 
6XM "HC1'" H36 H 0 0 N N N 23.813 23.728 13.588 6.748  -0.026 -0.507 "HC1'" 6XM 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6XM "O1'"  "CD1'" SING N N 1  
6XM "O1'"  "CD2'" SING N N 2  
6XM "CD1'" "CC1'" SING N N 3  
6XM "CC1'" "N2'"  SING N N 4  
6XM "CD2'" "CC2'" SING N N 5  
6XM "CC2'" "N2'"  SING N N 6  
6XM "N2'"  "CB'"  SING N N 7  
6XM "CB'"  "CA'"  SING N N 8  
6XM "CA'"  "N1'"  SING N N 9  
6XM "C3'"  "C2'"  DOUB Y N 10 
6XM "C3'"  "C6'"  SING Y N 11 
6XM "C2'"  "C1'"  SING Y N 12 
6XM "N1'"  "C6'"  SING N N 13 
6XM "N1'"  "C9'"  SING N N 14 
6XM "C6'"  "C7'"  DOUB Y N 15 
6XM "C1'"  "C8'"  DOUB Y N 16 
6XM "C4'"  "C9'"  SING Y N 17 
6XM "C4'"  C5     DOUB Y N 18 
6XM "C9'"  C10    DOUB Y N 19 
6XM "C7'"  "C8'"  SING Y N 20 
6XM "C7'"  C11    SING N N 21 
6XM "C8'"  O      SING N N 22 
6XM C5     C4     SING Y N 23 
6XM C10    C11    SING N N 24 
6XM C10    C9     SING Y N 25 
6XM C11    C7     SING N N 26 
6XM O      C8     SING N N 27 
6XM C4     C9     DOUB Y N 28 
6XM C9     N1     SING N N 29 
6XM C7     C8     SING Y N 30 
6XM C7     C6     DOUB Y N 31 
6XM C8     C1     DOUB Y N 32 
6XM N1     C6     SING N N 33 
6XM N1     CA     SING N N 34 
6XM C6     C3     SING Y N 35 
6XM C1     C2     SING Y N 36 
6XM CA     CB     SING N N 37 
6XM CB     N2     SING N N 38 
6XM CC1    N2     SING N N 39 
6XM CC1    CD1    SING N N 40 
6XM C3     C2     DOUB Y N 41 
6XM N2     CC2    SING N N 42 
6XM CD1    O1     SING N N 43 
6XM CC2    CD2    SING N N 44 
6XM O1     CD2    SING N N 45 
6XM C1     H1     SING N N 46 
6XM C2     H2     SING N N 47 
6XM CA     HA1    SING N N 48 
6XM CA     HA2    SING N N 49 
6XM CB     HB2    SING N N 50 
6XM CB     HB1    SING N N 51 
6XM CC1    HC2    SING N N 52 
6XM CC1    HC1    SING N N 53 
6XM CD1    HD2    SING N N 54 
6XM CD1    HD1    SING N N 55 
6XM CD2    HD3    SING N N 56 
6XM CD2    HD4    SING N N 57 
6XM CC2    HC3    SING N N 58 
6XM CC2    HC4    SING N N 59 
6XM C3     H3     SING N N 60 
6XM "C1'"  "H1'"  SING N N 61 
6XM "C2'"  "H2'"  SING N N 62 
6XM "C3'"  "H3'"  SING N N 63 
6XM C11    H7     SING N N 64 
6XM C4     H4     SING N N 65 
6XM C5     H5     SING N N 66 
6XM "C4'"  "H4'"  SING N N 67 
6XM "CA'"  "HA2'" SING N N 68 
6XM "CA'"  "HA1'" SING N N 69 
6XM "CB'"  "HB1'" SING N N 70 
6XM "CB'"  "HB2'" SING N N 71 
6XM "CC2'" "HC3'" SING N N 72 
6XM "CC2'" "HC4'" SING N N 73 
6XM "CD2'" "HD3'" SING N N 74 
6XM "CD2'" "HD4'" SING N N 75 
6XM "CD1'" "HD2'" SING N N 76 
6XM "CD1'" "HD1'" SING N N 77 
6XM "CC1'" "HC2'" SING N N 78 
6XM "CC1'" "HC1'" SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6XM InChI            InChI                1.03  "InChI=1S/C31H34N4O3/c1-4-22-28-23(5-1)35(13-11-33-16-20-37-21-17-33)25-7-3-9-27-30(25)31(28)29-24(6-2-8-26(29)38-27)34(22)12-10-32-14-18-36-19-15-32/h1-9,31H,10-21H2" 
6XM InChIKey         InChI                1.03  JDODSALIMITEDK-UHFFFAOYSA-N                                                                                                                                             
6XM SMILES_CANONICAL CACTVS               3.385 "C1CN(CCO1)CCN2c3cccc4Oc5cccc6N(CCN7CCOCC7)c8cccc2c8[C@@H](c34)c56"                                                                                                     
6XM SMILES           CACTVS               3.385 "C1CN(CCO1)CCN2c3cccc4Oc5cccc6N(CCN7CCOCC7)c8cccc2c8[CH](c34)c56"                                                                                                       
6XM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc2c3c(c1)N(c4cccc5c4C3c6c(cccc6O5)N2CCN7CCOCC7)CCN8CCOCC8"                                                                                                          
6XM SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc2c3c(c1)N(c4cccc5c4C3c6c(cccc6O5)N2CCN7CCOCC7)CCN8CCOCC8"                                                                                                          
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6XM "Create component"   2016-07-15 EBI  
6XM "Initial release"    2016-09-14 RCSB 
6XM "Other modification" 2018-02-27 EBI  
# 
