data_8MM
#

_chem_comp.id                                   8MM
_chem_comp.name                                 "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-(acetylamino)-6-amino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H41 N5 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N2'-acetylgentamicin C1A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-02-28
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       491.579
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8MM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5US1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8MM  C4   C1   C  0  1  N  N  N  61.724  143.311  15.169  -5.064  -1.095  -0.508  C4   8MM   1  
8MM  C14  C2   C  0  1  N  N  R  61.845  144.073  25.004   4.723   0.596  -0.216  C14  8MM   2  
8MM  C5   C3   C  0  1  N  N  R  62.124  142.156  16.110  -3.806  -1.641   0.174  C5   8MM   3  
8MM  C6   C4   C  0  1  N  N  R  61.797  142.669  17.523  -2.894  -0.472   0.554  C6   8MM   4  
8MM  C11  C5   C  0  1  N  N  S  62.176  144.719  21.497   1.088   1.361  -0.378  C11  8MM   5  
8MM  C7   C6   C  0  1  N  N  R  62.166  144.590  19.018  -1.399   1.126  -0.426  C7   8MM   6  
8MM  C8   C7   C  0  1  N  N  S  62.814  145.965  18.946  -1.487   2.258  -1.451  C8   8MM   7  
8MM  C9   C8   C  0  1  N  N  N  62.401  146.752  20.163  -0.328   3.234  -1.233  C9   8MM   8  
8MM  C10  C9   C  0  1  N  N  R  62.822  146.090  21.435   1.000   2.494  -1.403  C10  8MM   9  
8MM  C12  C10  C  0  1  N  N  S  62.658  143.909  20.312  -0.071   0.386  -0.596  C12  8MM  10  
8MM  C13  C11  C  0  1  N  N  R  61.459  143.825  23.563   3.398   1.211   0.241  C13  8MM  11  
8MM  N1   N1   N  0  1  N  N  N  62.412  146.900  22.594   2.112   3.431  -1.194  N1   8MM  12  
8MM  N2   N2   N  0  1  N  N  N  62.418  146.659  17.710  -2.762   2.969  -1.288  N2   8MM  13  
8MM  C3   C12  C  0  1  N  N  N  60.210  143.531  15.374  -5.753  -0.101   0.433  C3   8MM  14  
8MM  N3   N3   N  0  1  N  N  N  63.550  141.823  16.007  -3.100  -2.536  -0.745  N3   8MM  15  
8MM  N    N4   N  0  1  N  N  N  63.408  143.407  26.712   5.983  -1.504  -0.336  N    8MM  16  
8MM  O    O1   O  0  1  N  N  N  60.356  142.864  17.698  -3.605   0.430   1.405  O    8MM  17  
8MM  C1   C13  C  0  1  N  N  N  58.430  144.219  17.028  -5.425   1.972   1.790  C1   8MM  18  
8MM  C15  C14  C  0  1  N  N  R  62.983  143.193  25.313   4.688  -0.915   0.030  C15  8MM  19  
8MM  C16  C15  C  0  1  N  N  R  62.454  141.714  25.043   4.409  -1.173   1.514  C16  8MM  20  
8MM  C17  C16  C  0  1  N  N  N  62.025  141.570  23.584   3.096  -0.489   1.905  C17  8MM  21  
8MM  C18  C17  C  0  1  N  N  N  63.493  140.626  25.307   4.293  -2.679   1.759  C18  8MM  22  
8MM  C19  C18  C  0  1  N  N  N  64.808  143.061  27.021   6.038  -1.804  -1.773  C19  8MM  23  
8MM  C2   C19  C  0  1  N  N  S  59.936  143.925  16.823  -4.764   1.008   0.802  C2   8MM  24  
8MM  CAC  C20  C  0  1  N  N  N  65.226  140.813  14.469  -2.730  -4.753  -1.778  CAC  8MM  25  
8MM  CAW  C21  C  0  1  N  N  N  63.785  141.302  14.644  -3.457  -3.832  -0.832  CAW  8MM  26  
8MM  N4   N5   N  0  1  N  N  N  57.937  144.161  18.433  -4.522   3.100   2.052  N4   8MM  27  
8MM  O1   O2   O  0  1  N  N  N  62.582  143.875  17.824  -2.481   0.215  -0.630  O1   8MM  28  
8MM  O2   O3   O  0  1  N  N  N  62.142  142.585  20.455   0.011  -0.672   0.361  O2   8MM  29  
8MM  O3   O4   O  0  1  N  N  N  62.604  144.140  22.721   2.328   0.670  -0.537  O3   8MM  30  
8MM  O4   O5   O  0  1  N  N  N  60.954  142.517  23.308   3.185   0.908   1.621  O4   8MM  31  
8MM  O5   O6   O  0  1  N  N  N  61.324  141.466  25.888   5.477  -0.642   2.300  O5   8MM  32  
8MM  O6   O7   O  0  1  N  N  N  62.295  145.428  25.145   4.911   0.848  -1.611  O6   8MM  33  
8MM  OAH  O8   O  0  1  N  N  N  62.859  140.255  14.330  -4.365  -4.258  -0.149  OAH  8MM  34  
8MM  H1   H1   H  0  1  N  N  N  61.931  143.040  14.123  -4.787  -0.589  -1.433  H1   8MM  35  
8MM  H2   H2   H  0  1  N  N  N  62.280  144.224  15.428  -5.744  -1.917  -0.731  H2   8MM  36  
8MM  H3   H3   H  0  1  N  N  N  60.994  143.861  25.668   5.545   1.038   0.347  H3   8MM  37  
8MM  H4   H4   H  0  1  N  N  N  61.506  141.273  15.888  -4.089  -2.189   1.073  H4   8MM  38  
8MM  H5   H5   H  0  1  N  N  N  62.114  141.884  18.226  -2.016  -0.851   1.078  H5   8MM  39  
8MM  H6   H6   H  0  1  N  N  N  61.081  144.819  21.463   1.029   1.776   0.628  H6   8MM  40  
8MM  H7   H7   H  0  1  N  N  N  61.071  144.694  19.050  -1.458   1.541   0.580  H7   8MM  41  
8MM  H8   H8   H  0  1  N  N  N  63.907  145.840  18.958  -1.428   1.844  -2.457  H8   8MM  42  
8MM  H9   H9   H  0  1  N  N  N  62.863  147.749  20.113  -0.391   4.041  -1.963  H9   8MM  43  
8MM  H10  H10  H  0  1  N  N  N  61.306  146.855  20.163  -0.387   3.649  -0.227  H10  8MM  44  
8MM  H11  H11  H  0  1  N  N  N  63.915  145.971  21.437   1.059   2.079  -2.409  H11  8MM  45  
8MM  H12  H12  H  0  1  N  N  N  63.758  143.893  20.308  -0.012  -0.029  -1.602  H12  8MM  46  
8MM  H13  H13  H  0  1  N  N  N  60.664  144.545  23.320   3.434   2.292   0.107  H13  8MM  47  
8MM  H14  H14  H  0  1  N  N  N  62.700  146.446  23.437   2.077   4.189  -1.859  H14  8MM  48  
8MM  H15  H15  H  0  1  N  N  N  62.840  147.802  22.538   2.118   3.780  -0.247  H15  8MM  49  
8MM  H17  H17  H  0  1  N  N  N  62.852  147.559  17.679  -2.799   3.786  -1.879  H17  8MM  50  
8MM  H18  H18  H  0  1  N  N  N  62.709  146.122  16.918  -3.543   2.356  -1.469  H18  8MM  51  
8MM  H20  H20  H  0  1  N  N  N  59.864  144.333  14.706  -6.618   0.333  -0.067  H20  8MM  52  
8MM  H21  H21  H  0  1  N  N  N  59.671  142.601  15.140  -6.074  -0.619   1.337  H21  8MM  53  
8MM  H22  H22  H  0  1  N  N  N  64.236  141.929  16.727  -2.374  -2.195  -1.291  H22  8MM  54  
8MM  H24  H24  H  0  1  N  N  N  63.277  144.375  26.927   6.744  -0.900  -0.063  H24  8MM  55  
8MM  H26  H26  H  0  1  N  N  N  58.229  145.230  16.643  -6.358   2.344   1.365  H26  8MM  56  
8MM  H27  H27  H  0  1  N  N  N  57.861  143.483  16.441  -5.634   1.449   2.723  H27  8MM  57  
8MM  H28  H28  H  0  1  N  N  N  63.819  143.397  24.628   3.899  -1.365  -0.574  H28  8MM  58  
8MM  H29  H29  H  0  1  N  N  N  61.667  140.546  23.405   2.275  -0.924   1.333  H29  8MM  59  
8MM  H30  H30  H  0  1  N  N  N  62.881  141.780  22.926   2.913  -0.633   2.970  H30  8MM  60  
8MM  H31  H31  H  0  1  N  N  N  63.834  140.689  26.351   5.227  -3.165   1.475  H31  8MM  61  
8MM  H32  H32  H  0  1  N  N  N  63.043  139.638  25.128   4.095  -2.861   2.815  H32  8MM  62  
8MM  H33  H33  H  0  1  N  N  N  64.350  140.766  24.632   3.477  -3.083   1.161  H33  8MM  63  
8MM  H34  H34  H  0  1  N  N  N  65.009  143.260  28.084   7.008  -2.239  -2.016  H34  8MM  64  
8MM  H35  H35  H  0  1  N  N  N  64.977  141.995  26.809   5.249  -2.512  -2.026  H35  8MM  65  
8MM  H36  H36  H  0  1  N  N  N  65.482  143.670  26.400   5.899  -0.885  -2.341  H36  8MM  66  
8MM  H37  H37  H  0  1  N  N  N  60.501  144.841  17.050  -4.475   1.551  -0.097  H37  8MM  67  
8MM  H38  H38  H  0  1  N  N  N  65.220  139.763  14.140  -1.674  -4.788  -1.510  H38  8MM  68  
8MM  H39  H39  H  0  1  N  N  N  65.734  141.431  13.714  -3.156  -5.754  -1.710  H39  8MM  69  
8MM  H40  H40  H  0  1  N  N  N  65.759  140.894  15.428  -2.834  -4.382  -2.798  H40  8MM  70  
8MM  H42  H42  H  0  1  N  N  N  56.958  144.365  18.452  -4.261   3.562   1.193  H42  8MM  71  
8MM  H43  H43  H  0  1  N  N  N  58.094  143.245  18.804  -4.936   3.751   2.702  H43  8MM  72  
8MM  H45  H45  H  0  1  N  N  N  62.468  142.203  21.261   0.781  -1.246   0.249  H45  8MM  73  
8MM  H46  H46  H  0  1  N  N  N  61.583  141.554  26.798   5.365  -0.768   3.252  H46  8MM  74  
8MM  H47  H47  H  0  1  N  N  N  62.539  145.589  26.049   4.944   1.787  -1.840  H47  8MM  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8MM  OAH  CAW  DOUB  N  N   1  
8MM  CAC  CAW  SING  N  N   2  
8MM  CAW  N3   SING  N  N   3  
8MM  C4   C3   SING  N  N   4  
8MM  C4   C5   SING  N  N   5  
8MM  C3   C2   SING  N  N   6  
8MM  N3   C5   SING  N  N   7  
8MM  C5   C6   SING  N  N   8  
8MM  C2   C1   SING  N  N   9  
8MM  C2   O    SING  N  N  10  
8MM  C1   N4   SING  N  N  11  
8MM  C6   O    SING  N  N  12  
8MM  C6   O1   SING  N  N  13  
8MM  N2   C8   SING  N  N  14  
8MM  O1   C7   SING  N  N  15  
8MM  C8   C7   SING  N  N  16  
8MM  C8   C9   SING  N  N  17  
8MM  C7   C12  SING  N  N  18  
8MM  C9   C10  SING  N  N  19  
8MM  C12  O2   SING  N  N  20  
8MM  C12  C11  SING  N  N  21  
8MM  C10  C11  SING  N  N  22  
8MM  C10  N1   SING  N  N  23  
8MM  C11  O3   SING  N  N  24  
8MM  O3   C13  SING  N  N  25  
8MM  O4   C13  SING  N  N  26  
8MM  O4   C17  SING  N  N  27  
8MM  C13  C14  SING  N  N  28  
8MM  C17  C16  SING  N  N  29  
8MM  C14  O6   SING  N  N  30  
8MM  C14  C15  SING  N  N  31  
8MM  C16  C18  SING  N  N  32  
8MM  C16  C15  SING  N  N  33  
8MM  C16  O5   SING  N  N  34  
8MM  C15  N    SING  N  N  35  
8MM  N    C19  SING  N  N  36  
8MM  C4   H1   SING  N  N  37  
8MM  C4   H2   SING  N  N  38  
8MM  C14  H3   SING  N  N  39  
8MM  C5   H4   SING  N  N  40  
8MM  C6   H5   SING  N  N  41  
8MM  C11  H6   SING  N  N  42  
8MM  C7   H7   SING  N  N  43  
8MM  C8   H8   SING  N  N  44  
8MM  C9   H9   SING  N  N  45  
8MM  C9   H10  SING  N  N  46  
8MM  C10  H11  SING  N  N  47  
8MM  C12  H12  SING  N  N  48  
8MM  C13  H13  SING  N  N  49  
8MM  N1   H14  SING  N  N  50  
8MM  N1   H15  SING  N  N  51  
8MM  N2   H17  SING  N  N  52  
8MM  N2   H18  SING  N  N  53  
8MM  C3   H20  SING  N  N  54  
8MM  C3   H21  SING  N  N  55  
8MM  N3   H22  SING  N  N  56  
8MM  N    H24  SING  N  N  57  
8MM  C1   H26  SING  N  N  58  
8MM  C1   H27  SING  N  N  59  
8MM  C15  H28  SING  N  N  60  
8MM  C17  H29  SING  N  N  61  
8MM  C17  H30  SING  N  N  62  
8MM  C18  H31  SING  N  N  63  
8MM  C18  H32  SING  N  N  64  
8MM  C18  H33  SING  N  N  65  
8MM  C19  H34  SING  N  N  66  
8MM  C19  H35  SING  N  N  67  
8MM  C19  H36  SING  N  N  68  
8MM  C2   H37  SING  N  N  69  
8MM  CAC  H38  SING  N  N  70  
8MM  CAC  H39  SING  N  N  71  
8MM  CAC  H40  SING  N  N  72  
8MM  N4   H42  SING  N  N  73  
8MM  N4   H43  SING  N  N  74  
8MM  O2   H45  SING  N  N  75  
8MM  O5   H46  SING  N  N  76  
8MM  O6   H47  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8MM  SMILES            ACDLabs               12.01  "C1CC(OC(C1NC(C)=O)OC3C(C(OC2C(O)C(NC)C(C)(O)CO2)C(CC3N)N)O)CN"  
8MM  InChI             InChI                 1.03   "InChI=1S/C21H41N5O8/c1-9(27)26-13-5-4-10(7-22)32-19(13)33-16-11(23)6-12(24)17(14(16)28)34-20-15(29)18(25-3)21(2,30)8-31-20/h10-20,25,28-30H,4-8,22-24H2,1-3H3,(H,26,27)/t10-,11-,12+,13+,14-,15+,16+,17-,18+,19+,20+,21-/m0/s1"  
8MM  InChIKey          InChI                 1.03   RLGSXXMFPPOROB-JOYMZIHVSA-N  
8MM  SMILES_CANONICAL  CACTVS                3.385  "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CN)CC[C@H]3NC(C)=O)[C@@H]2O"  
8MM  SMILES            CACTVS                3.385  "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CN)CC[CH]3NC(C)=O)[CH]2O"  
8MM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@@H]1CC[C@H](O[C@@H]1O[C@@H]2[C@H](C[C@H]([C@@H]([C@H]2O)O[C@@H]3[C@@H]([C@H]([C@@](CO3)(C)O)NC)O)N)N)CN"  
8MM  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1CCC(OC1OC2C(CC(C(C2O)OC3C(C(C(CO3)(C)O)NC)O)N)N)CN"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8MM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-(acetylamino)-6-amino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside"  
8MM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[(2~{R},3~{R},6~{S})-6-(aminomethyl)-2-[(1~{R},2~{S},3~{S},4~{R},6~{S})-4,6-bis(azanyl)-3-[(2~{R},3~{R},4~{R},5~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-oxan-3-yl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8MM  "Create component"  2017-02-28  RCSB  
8MM  "Initial release"   2017-03-15  RCSB  
8MM  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8MM
_pdbx_chem_comp_synonyms.name        "N2'-acetylgentamicin C1A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
