data_9XM
# 
_chem_comp.id                                    9XM 
_chem_comp.name                                  "[(2~{R},3~{S})-2-[3-(7-bromanyl-6-chloranyl-4-oxidanylidene-quinazolin-3-yl)-2-oxidanylidene-propyl]piperidin-3-yl] ~{N}-[4-[[3-(2,3-dihydro-1~{H}-inden-2-ylcarbamoyl)pyrazin-2-yl]carbamoyl]piperazin-1-yl]sulfonylcarbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H38 Br Cl N10 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-22 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        886.171 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9XM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QC1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9XM N1  N1  N  0 1 N N N 52.467 176.546 27.120 5.016   -0.427 -0.937 N1  9XM 1  
9XM N3  N2  N  0 1 N N N 54.183 179.422 23.422 -0.937  3.950  2.502  N3  9XM 2  
9XM C4  C1  C  0 1 N N N 53.771 176.140 27.035 5.687   -0.422 -2.118 C4  9XM 3  
9XM C5  C2  C  0 1 N N N 51.802 177.127 25.958 3.706   0.221  -0.844 C5  9XM 4  
9XM C6  C3  C  0 1 N N N 51.665 178.650 26.066 3.886   1.663  -0.443 C6  9XM 5  
9XM C7  C4  C  0 1 N N N 50.547 179.273 25.273 2.682   2.555  -0.277 C7  9XM 6  
9XM C8  C5  C  0 1 N N R 50.773 180.748 24.922 3.139   3.957  0.131  C8  9XM 7  
9XM C10 C6  C  0 1 N N N 51.141 183.321 24.451 3.225   6.816  -0.325 C10 9XM 8  
9XM C13 C7  C  0 1 N N N 52.905 179.262 22.923 -0.174  4.461  1.516  C13 9XM 9  
9XM C15 C8  C  0 1 N N N 58.001 179.270 21.057 -4.762  4.080  -0.585 C15 9XM 10 
9XM C17 C9  C  0 1 N N N 57.193 177.081 22.219 -3.641  2.051  1.253  C17 9XM 11 
9XM C20 C10 C  0 1 Y N N 62.460 178.535 25.063 -7.065  -1.201 -2.512 C20 9XM 12 
9XM C21 C11 C  0 1 Y N N 64.170 180.022 25.275 -7.471  -1.230 -4.768 C21 9XM 13 
9XM C22 C12 C  0 1 Y N N 63.565 180.861 24.355 -7.050  0.089  -4.865 C22 9XM 14 
9XM C24 C13 C  0 1 N N N 61.866 175.455 27.195 -7.572  -3.809 0.206  C24 9XM 15 
9XM C26 C14 C  0 1 Y N N 63.588 174.436 28.479 -8.435  -5.865 1.168  C26 9XM 16 
9XM C28 C15 C  0 1 N N N 62.371 174.205 26.456 -8.887  -3.547 0.969  C28 9XM 17 
9XM N   N3  N  0 1 N N N 54.484 175.668 27.991 6.849   -0.979 -2.282 N   9XM 18 
9XM C   C16 C  0 1 Y N N 52.681 175.280 31.735 8.722   -2.902 0.867  C   9XM 19 
9XM O   O1  O  0 1 N N N 52.411 179.315 26.747 4.994   2.103  -0.254 O   9XM 20 
9XM C1  C17 C  0 1 Y N N 54.015 174.945 31.551 9.338   -2.850 -0.379 C1  9XM 21 
9XM C11 C18 C  0 1 N N N 52.400 182.522 24.167 2.375   6.235  0.809  C11 9XM 22 
9XM C12 C19 C  0 1 N N S 52.148 181.036 24.335 1.914   4.828  0.421  C12 9XM 23 
9XM C14 C20 C  0 1 N N N 56.716 179.467 21.839 -3.306  4.155  -0.111 C14 9XM 24 
9XM C16 C21 C  0 1 N N N 58.495 177.618 22.788 -5.098  1.975  0.779  C16 9XM 25 
9XM C18 C22 C  0 1 N N N 60.080 179.418 22.334 -5.716  2.061  -1.588 C18 9XM 26 
9XM C19 C23 C  0 1 Y N N 61.862 179.379 24.112 -6.645  0.135  -2.609 C19 9XM 27 
9XM C2  C24 C  0 1 Y N N 54.608 175.071 30.305 8.731   -2.214 -1.440 C2  9XM 28 
9XM C23 C25 C  0 1 N N N 61.838 177.243 25.510 -7.064  -1.886 -1.203 C23 9XM 29 
9XM C25 C26 C  0 1 N N N 62.334 175.250 28.646 -7.594  -5.341 0.023  C25 9XM 30 
9XM C27 C27 C  0 1 Y N N 63.622 173.862 27.217 -9.178  -4.833 1.711  C27 9XM 31 
9XM C29 C28 C  0 1 Y N N 64.729 173.114 26.823 -10.025 -5.082 2.778  C29 9XM 32 
9XM C3  C29 C  0 1 Y N N 53.861 175.556 29.232 7.482   -1.615 -1.264 C3  9XM 33 
9XM C30 C30 C  0 1 Y N N 65.793 172.943 27.695 -10.130 -6.357 3.300  C30 9XM 34 
9XM C31 C31 C  0 1 Y N N 65.755 173.507 28.958 -9.387  -7.388 2.756  C31 9XM 35 
9XM C32 C32 C  0 1 Y N N 64.654 174.250 29.354 -8.541  -7.141 1.692  C32 9XM 36 
9XM C33 C33 C  0 1 N N N 51.753 176.464 28.309 5.545   -1.030 0.154  C33 9XM 37 
9XM C34 C34 C  0 1 Y N N 52.526 175.924 29.429 6.859   -1.670 0.003  C34 9XM 38 
9XM C35 C35 C  0 1 Y N N 51.935 175.779 30.684 7.490   -2.318 1.064  C35 9XM 39 
9XM C9  C36 C  0 1 N N N 50.650 183.041 25.837 4.412   5.888  -0.593 C9  9XM 40 
9XM N2  N4  N  0 1 N N N 50.574 181.598 26.101 3.918   4.555  -0.961 N2  9XM 41 
9XM N4  N5  N  0 1 N N N 56.181 178.152 22.242 -3.193  3.448  1.173  N4  9XM 42 
9XM N5  N6  N  0 1 N N N 59.028 178.670 21.915 -5.211  2.682  -0.505 N5  9XM 43 
9XM N6  N7  N  0 1 N N N 60.687 178.987 23.470 -6.225  0.817  -1.476 N6  9XM 44 
9XM N7  N8  N  0 1 Y N N 63.628 178.851 25.645 -7.470  -1.844 -3.603 N7  9XM 45 
9XM N8  N9  N  0 1 Y N N 62.404 180.552 23.758 -6.650  0.742  -3.789 N8  9XM 46 
9XM N9  N10 N  0 1 N N N 62.373 176.699 26.614 -7.573  -3.129 -1.092 N9  9XM 47 
9XM O1  O2  O  0 1 N N N 52.244 180.434 23.019 1.155   4.248  1.514  O1  9XM 48 
9XM O2  O3  O  0 1 N N N 52.430 178.218 22.531 -0.686  5.114  0.628  O2  9XM 49 
9XM O3  O4  O  0 1 N N N 54.554 176.896 23.453 -3.087  3.526  3.637  O3  9XM 50 
9XM O4  O5  O  0 1 N N N 56.062 178.451 24.649 -2.756  5.605  2.290  O4  9XM 51 
9XM O5  O6  O  0 1 N N N 60.422 180.422 21.726 -5.715  2.622  -2.667 O5  9XM 52 
9XM O6  O7  O  0 1 N N N 60.901 176.733 24.896 -6.603  -1.329 -0.225 O6  9XM 53 
9XM O7  O8  O  0 1 N N N 50.596 176.835 28.384 4.954   -1.041 1.219  O7  9XM 54 
9XM S   S1  S  0 1 N N N 55.254 178.139 23.516 -2.572  4.212  2.504  S   9XM 55 
9XM BR  BR1 BR 0 0 N N N 55.083 174.360 33.003 11.029  -3.661 -0.621 BR  9XM 56 
9XM CL  CL1 CL 0 0 N N N 51.914 175.067 33.271 9.512   -3.711 2.184  CL  9XM 57 
9XM H1  H1  H  0 1 N N N 54.475 180.326 23.735 -0.529  3.429  3.211  H1  9XM 58 
9XM H2  H2  H  0 1 N N N 54.246 176.225 26.069 5.231   0.070  -2.964 H2  9XM 59 
9XM H3  H3  H  0 1 N N N 50.798 176.687 25.869 3.207   0.173  -1.812 H3  9XM 60 
9XM H4  H4  H  0 1 N N N 52.388 176.888 25.059 3.099   -0.291 -0.097 H4  9XM 61 
9XM H5  H5  H  0 1 N N N 49.621 179.196 25.862 2.138   2.610  -1.220 H5  9XM 62 
9XM H6  H6  H  0 1 N N N 50.433 178.709 24.336 2.030   2.146  0.495  H6  9XM 63 
9XM H7  H7  H  0 1 N N N 50.024 181.026 24.166 3.758   3.891  1.025  H7  9XM 64 
9XM H8  H8  H  0 1 N N N 51.363 184.394 24.354 2.619   6.902  -1.227 H8  9XM 65 
9XM H9  H9  H  0 1 N N N 50.362 183.041 23.727 3.592   7.801  -0.037 H9  9XM 66 
9XM H10 H10 H  0 1 N N N 57.808 178.605 20.202 -5.389  4.702  0.054  H10 9XM 67 
9XM H11 H11 H  0 1 N N N 58.357 180.244 20.691 -4.830  4.427  -1.616 H11 9XM 68 
9XM H12 H12 H  0 1 N N N 56.846 176.233 22.828 -3.574  1.704  2.284  H12 9XM 69 
9XM H13 H13 H  0 1 N N N 57.353 176.747 21.183 -3.015  1.428  0.614  H13 9XM 70 
9XM H14 H14 H  0 1 N N N 65.112 180.320 25.711 -7.800  -1.755 -5.653 H14 9XM 71 
9XM H15 H15 H  0 1 N N N 64.044 181.797 24.109 -7.054  0.585  -5.825 H15 9XM 72 
9XM H16 H16 H  0 1 N N N 60.766 175.457 27.175 -6.711  -3.502 0.801  H16 9XM 73 
9XM H17 H17 H  0 1 N N N 61.637 173.388 26.509 -8.759  -2.724 1.673  H17 9XM 74 
9XM H18 H18 H  0 1 N N N 62.595 174.429 25.403 -9.693  -3.324 0.269  H18 9XM 75 
9XM H19 H19 H  0 1 N N N 53.190 182.834 24.866 2.970   6.185  1.721  H19 9XM 76 
9XM H20 H20 H  0 1 N N N 52.725 182.718 23.135 1.506   6.871  0.974  H20 9XM 77 
9XM H21 H21 H  0 1 N N N 52.917 180.614 24.999 1.288   4.883  -0.469 H21 9XM 78 
9XM H22 H22 H  0 1 N N N 56.921 180.070 22.736 -2.656  3.683  -0.847 H22 9XM 79 
9XM H23 H23 H  0 1 N N N 55.979 179.986 21.209 -3.018  5.198  0.020  H23 9XM 80 
9XM H24 H24 H  0 1 N N N 59.226 176.799 22.860 -5.386  0.932  0.648  H24 9XM 81 
9XM H25 H25 H  0 1 N N N 58.311 178.034 23.789 -5.748  2.445  1.516  H25 9XM 82 
9XM H26 H26 H  0 1 N N N 55.643 174.795 30.166 9.218   -2.180 -2.403 H26 9XM 83 
9XM H27 H27 H  0 1 N N N 62.548 176.213 29.133 -8.052  -5.601 -0.932 H27 9XM 84 
9XM H28 H28 H  0 1 N N N 61.581 174.702 29.232 -6.583  -5.744 0.080  H28 9XM 85 
9XM H29 H29 H  0 1 N N N 64.758 172.668 25.840 -10.605 -4.277 3.203  H29 9XM 86 
9XM H30 H30 H  0 1 N N N 66.654 172.368 27.388 -10.791 -6.548 4.132  H30 9XM 87 
9XM H31 H31 H  0 1 N N N 66.584 173.368 29.636 -9.467  -8.385 3.163  H31 9XM 88 
9XM H32 H32 H  0 1 N N N 64.623 174.685 30.342 -7.960  -7.948 1.268  H32 9XM 89 
9XM H33 H33 H  0 1 N N N 50.902 176.055 30.833 7.016   -2.362 2.033  H33 9XM 90 
9XM H34 H34 H  0 1 N N N 51.340 183.501 26.560 5.011   6.291  -1.410 H34 9XM 91 
9XM H35 H35 H  0 1 N N N 49.648 183.479 25.956 5.025   5.813  0.305  H35 9XM 92 
9XM H36 H36 H  0 1 N N N 49.671 181.398 26.480 4.679   3.951  -1.235 H36 9XM 93 
9XM H38 H38 H  0 1 N N N 60.199 178.248 23.935 -6.296  0.400  -0.604 H38 9XM 94 
9XM H39 H39 H  0 1 N N N 63.144 177.159 27.054 -7.941  -3.574 -1.872 H39 9XM 95 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9XM C15 C14 SING N N 1   
9XM C15 N5  SING N N 2   
9XM O5  C18 DOUB N N 3   
9XM C14 N4  SING N N 4   
9XM N5  C18 SING N N 5   
9XM N5  C16 SING N N 6   
9XM C17 N4  SING N N 7   
9XM C17 C16 SING N N 8   
9XM N4  S   SING N N 9   
9XM C18 N6  SING N N 10  
9XM O2  C13 DOUB N N 11  
9XM C13 O1  SING N N 12  
9XM C13 N3  SING N N 13  
9XM O1  C12 SING N N 14  
9XM N3  S   SING N N 15  
9XM O3  S   DOUB N N 16  
9XM N6  C19 SING N N 17  
9XM S   O4  DOUB N N 18  
9XM N8  C19 DOUB Y N 19  
9XM N8  C22 SING Y N 20  
9XM C19 C20 SING Y N 21  
9XM C11 C12 SING N N 22  
9XM C11 C10 SING N N 23  
9XM C12 C8  SING N N 24  
9XM C22 C21 DOUB Y N 25  
9XM C10 C9  SING N N 26  
9XM O6  C23 DOUB N N 27  
9XM C8  C7  SING N N 28  
9XM C8  N2  SING N N 29  
9XM C20 C23 SING N N 30  
9XM C20 N7  DOUB Y N 31  
9XM C7  C6  SING N N 32  
9XM C21 N7  SING Y N 33  
9XM C23 N9  SING N N 34  
9XM C9  N2  SING N N 35  
9XM C5  C6  SING N N 36  
9XM C5  N1  SING N N 37  
9XM C6  O   DOUB N N 38  
9XM C28 C24 SING N N 39  
9XM C28 C27 SING N N 40  
9XM N9  C24 SING N N 41  
9XM C29 C27 DOUB Y N 42  
9XM C29 C30 SING Y N 43  
9XM C4  N1  SING N N 44  
9XM C4  N   DOUB N N 45  
9XM N1  C33 SING N N 46  
9XM C24 C25 SING N N 47  
9XM C27 C26 SING Y N 48  
9XM C30 C31 DOUB Y N 49  
9XM N   C3  SING N N 50  
9XM C33 O7  DOUB N N 51  
9XM C33 C34 SING N N 52  
9XM C26 C25 SING N N 53  
9XM C26 C32 DOUB Y N 54  
9XM C31 C32 SING Y N 55  
9XM C3  C34 DOUB Y N 56  
9XM C3  C2  SING Y N 57  
9XM C34 C35 SING Y N 58  
9XM C2  C1  DOUB Y N 59  
9XM C35 C   DOUB Y N 60  
9XM C1  C   SING Y N 61  
9XM C1  BR  SING N N 62  
9XM C   CL  SING N N 63  
9XM N3  H1  SING N N 64  
9XM C4  H2  SING N N 65  
9XM C5  H3  SING N N 66  
9XM C5  H4  SING N N 67  
9XM C7  H5  SING N N 68  
9XM C7  H6  SING N N 69  
9XM C8  H7  SING N N 70  
9XM C10 H8  SING N N 71  
9XM C10 H9  SING N N 72  
9XM C15 H10 SING N N 73  
9XM C15 H11 SING N N 74  
9XM C17 H12 SING N N 75  
9XM C17 H13 SING N N 76  
9XM C21 H14 SING N N 77  
9XM C22 H15 SING N N 78  
9XM C24 H16 SING N N 79  
9XM C28 H17 SING N N 80  
9XM C28 H18 SING N N 81  
9XM C11 H19 SING N N 82  
9XM C11 H20 SING N N 83  
9XM C12 H21 SING N N 84  
9XM C14 H22 SING N N 85  
9XM C14 H23 SING N N 86  
9XM C16 H24 SING N N 87  
9XM C16 H25 SING N N 88  
9XM C2  H26 SING N N 89  
9XM C25 H27 SING N N 90  
9XM C25 H28 SING N N 91  
9XM C29 H29 SING N N 92  
9XM C30 H30 SING N N 93  
9XM C31 H31 SING N N 94  
9XM C32 H32 SING N N 95  
9XM C35 H33 SING N N 96  
9XM C9  H34 SING N N 97  
9XM C9  H35 SING N N 98  
9XM N2  H36 SING N N 99  
9XM N6  H38 SING N N 100 
9XM N9  H39 SING N N 101 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9XM InChI            InChI                1.06  "InChI=1S/C36H38BrClN10O8S/c37-26-18-28-25(17-27(26)38)34(51)47(20-42-28)19-24(49)16-29-30(6-3-7-39-29)56-36(53)45-57(54,55)48-12-10-46(11-13-48)35(52)44-32-31(40-8-9-41-32)33(50)43-23-14-21-4-1-2-5-22(21)15-23/h1-2,4-5,8-9,17-18,20,23,29-30,39H,3,6-7,10-16,19H2,(H,43,50)(H,45,53)(H,41,44,52)/t29-,30+/m1/s1" 
9XM InChIKey         InChI                1.06  LACGGYFSTYXEOM-IHLOFXLRSA-N                                                                                                                                                                                                                                                                                           
9XM SMILES_CANONICAL CACTVS               3.385 "Clc1cc2C(=O)N(CC(=O)C[C@H]3NCCC[C@@H]3OC(=O)N[S](=O)(=O)N4CCN(CC4)C(=O)Nc5nccnc5C(=O)NC6Cc7ccccc7C6)C=Nc2cc1Br"                                                                                                                                                                                                      
9XM SMILES           CACTVS               3.385 "Clc1cc2C(=O)N(CC(=O)C[CH]3NCCC[CH]3OC(=O)N[S](=O)(=O)N4CCN(CC4)C(=O)Nc5nccnc5C(=O)NC6Cc7ccccc7C6)C=Nc2cc1Br"                                                                                                                                                                                                         
9XM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(C2)NC(=O)c3c(nccn3)NC(=O)N4CCN(CC4)S(=O)(=O)NC(=O)O[C@H]5CCCN[C@@H]5CC(=O)CN6C=Nc7cc(c(cc7C6=O)Cl)Br"                                                                                                                                                                                                  
9XM SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(C2)NC(=O)c3c(nccn3)NC(=O)N4CCN(CC4)S(=O)(=O)NC(=O)OC5CCCNC5CC(=O)CN6C=Nc7cc(c(cc7C6=O)Cl)Br"                                                                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           9XM 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S})-2-[3-(7-bromanyl-6-chloranyl-4-oxidanylidene-quinazolin-3-yl)-2-oxidanylidene-propyl]piperidin-3-yl] ~{N}-[4-[[3-(2,3-dihydro-1~{H}-inden-2-ylcarbamoyl)pyrazin-2-yl]carbamoyl]piperazin-1-yl]sulfonylcarbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9XM "Create component"  2021-11-22 PDBE 
9XM "Initial release"   2021-12-08 RCSB 
9XM "Modify descriptor" 2022-08-22 RCSB 
# 
