data_ATM
# 
_chem_comp.id                                    ATM 
_chem_comp.name                                  "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               DT 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        347.221 
_chem_comp.one_letter_code                       T 
_chem_comp.three_letter_code                     ATM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2TMK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ATM P      P    P 0  1 N N N 1.208  1.705 3.891 -4.092 1.481  0.053  P      ATM 1  
ATM OP1    O1P  O 0  1 N N N 2.357  2.294 3.221 -3.578 1.972  1.351  OP1    ATM 2  
ATM OP2    O2P  O 0  1 N N N 0.095  1.187 3.081 -4.760 2.702  -0.757 OP2    ATM 3  
ATM OP3    O3P  O 0  1 N Y N 1.618  0.623 4.946 -5.198 0.339  0.311  OP3    ATM 4  
ATM "O5'"  O5*  O 0  1 N N N 0.561  2.872 4.727 -2.878 0.867  -0.808 "O5'"  ATM 5  
ATM "C5'"  C5*  C 0  1 N N N 1.196  3.513 5.804 -2.254 -0.127 0.008  "C5'"  ATM 6  
ATM "C4'"  C4*  C 0  1 N N S 0.115  4.108 6.737 -1.085 -0.753 -0.755 "C4'"  ATM 7  
ATM "O4'"  O4*  O 0  1 N N N -0.544 5.281 6.249 0.006  0.187  -0.882 "O4'"  ATM 8  
ATM "C3'"  C3*  C 0  1 N N S -1.002 3.090 6.993 -0.468 -1.921 0.055  "C3'"  ATM 9  
ATM "N3'"  N3*  N 0  1 N N N -1.046 2.762 8.390 -1.181 -3.174 -0.205 "N3'"  ATM 10 
ATM "N4'"  N4*  N 1  1 N N N -0.854 1.711 9.004 -0.850 -4.124 0.295  "N4'"  ATM 11 
ATM "N5'"  N5*  N -1 1 N N N -0.678 0.782 9.556 -0.518 -5.074 0.796  "N5'"  ATM 12 
ATM "C2'"  C2*  C 0  1 N N N -2.289 3.765 6.629 0.973  -1.979 -0.507 "C2'"  ATM 13 
ATM "C1'"  C1*  C 0  1 N N R -1.887 5.221 6.721 1.194  -0.585 -1.125 "C1'"  ATM 14 
ATM N1     N1   N 0  1 N N N -2.740 6.042 5.874 2.347  0.063  -0.493 N1     ATM 15 
ATM C2     C2   C 0  1 N N N -3.421 7.107 6.497 2.299  0.381  0.813  C2     ATM 16 
ATM O2     O2   O 0  1 N N N -3.412 7.340 7.719 1.299  0.126  1.456  O2     ATM 17 
ATM N3     N3   N 0  1 N N N -4.100 7.943 5.614 3.343  0.976  1.419  N3     ATM 18 
ATM C4     C4   C 0  1 N N N -4.023 7.901 4.233 4.461  1.261  0.721  C4     ATM 19 
ATM O4     O4   O 0  1 N N N -4.523 8.788 3.576 5.407  1.800  1.269  O4     ATM 20 
ATM C5     C5   C 0  1 N N N -3.272 6.804 3.669 4.523  0.937  -0.655 C5     ATM 21 
ATM C5A    C5A  C 0  1 N N N -3.048 6.791 2.179 5.759  1.248  -1.459 C5A    ATM 22 
ATM C6     C6   C 0  1 N N N -2.714 5.879 4.493 3.461  0.339  -1.237 C6     ATM 23 
ATM HOP2   2HOP H 0  0 N N N -0.655 0.802 3.518 -5.481 3.040  -0.208 HOP2   ATM 24 
ATM HOP3   3HOP H 0  0 N N N 0.867  0.238 5.383 -5.506 0.047  -0.558 HOP3   ATM 25 
ATM "H5'"  1H5* H 0  1 N N N 1.901  2.839 6.344 -2.981 -0.900 0.258  "H5'"  ATM 26 
ATM "H5''" 2H5* H 0  0 N N N 1.936  4.276 5.468 -1.885 0.335  0.924  "H5''" ATM 27 
ATM "H4'"  H4*  H 0  1 N N N 0.692  4.377 7.651 -1.410 -1.097 -1.737 "H4'"  ATM 28 
ATM "H3'"  H3*  H 0  1 N N N -0.833 2.159 6.401 -0.461 -1.694 1.121  "H3'"  ATM 29 
ATM "H2'"  1H2* H 0  1 N N N -2.736 3.451 5.656 1.054  -2.752 -1.271 "H2'"  ATM 30 
ATM "H2''" 2H2* H 0  0 N N N -3.173 3.472 7.241 1.689  -2.158 0.296  "H2''" ATM 31 
ATM "H1'"  H1*  H 0  1 N N N -1.984 5.602 7.764 1.364  -0.678 -2.198 "H1'"  ATM 32 
ATM HN3    HN3  H 0  1 N N N -4.711 8.653 6.016 3.292  1.198  2.362  HN3    ATM 33 
ATM H51    1H5  H 0  1 N N N -2.468 5.944 1.743 5.670  2.245  -1.891 H51    ATM 34 
ATM H52    2H5  H 0  1 N N N -4.032 6.864 1.661 6.634  1.211  -0.809 H52    ATM 35 
ATM H53    3H5  H 0  1 N N N -2.575 7.753 1.872 5.868  0.514  -2.257 H53    ATM 36 
ATM H6     H6   H 0  1 N N N -2.238 4.993 4.039 3.491  0.081  -2.286 H6     ATM 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ATM P     OP1    DOUB N N 1  
ATM P     OP2    SING N N 2  
ATM P     OP3    SING N N 3  
ATM P     "O5'"  SING N N 4  
ATM OP2   HOP2   SING N N 5  
ATM OP3   HOP3   SING N N 6  
ATM "O5'" "C5'"  SING N N 7  
ATM "C5'" "C4'"  SING N N 8  
ATM "C5'" "H5'"  SING N N 9  
ATM "C5'" "H5''" SING N N 10 
ATM "C4'" "O4'"  SING N N 11 
ATM "C4'" "C3'"  SING N N 12 
ATM "C4'" "H4'"  SING N N 13 
ATM "O4'" "C1'"  SING N N 14 
ATM "C3'" "N3'"  SING N N 15 
ATM "C3'" "C2'"  SING N N 16 
ATM "C3'" "H3'"  SING N N 17 
ATM "N3'" "N4'"  DOUB N N 18 
ATM "N4'" "N5'"  DOUB N N 19 
ATM "C2'" "C1'"  SING N N 20 
ATM "C2'" "H2'"  SING N N 21 
ATM "C2'" "H2''" SING N N 22 
ATM "C1'" N1     SING N N 23 
ATM "C1'" "H1'"  SING N N 24 
ATM N1    C2     SING N N 25 
ATM N1    C6     SING N N 26 
ATM C2    O2     DOUB N N 27 
ATM C2    N3     SING N N 28 
ATM N3    C4     SING N N 29 
ATM N3    HN3    SING N N 30 
ATM C4    O4     DOUB N N 31 
ATM C4    C5     SING N N 32 
ATM C5    C5A    SING N N 33 
ATM C5    C6     DOUB N N 34 
ATM C5A   H51    SING N N 35 
ATM C5A   H52    SING N N 36 
ATM C5A   H53    SING N N 37 
ATM C6    H6     SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ATM SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(\N=[N+]=[N-])C2)COP(=O)(O)O"                                                                                              
ATM SMILES_CANONICAL CACTVS               3.341 "CC1=CN([C@H]2C[C@H](N=[N+]=[N-])[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                
ATM SMILES           CACTVS               3.341 "CC1=CN([CH]2C[CH](N=[N+]=[N-])[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                    
ATM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)N=[N+]=[N-]"                                                                                  
ATM SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)N=[N+]=[N-]"                                                                                               
ATM InChI            InChI                1.03  "InChI=1S/C10H14N5O7P/c1-5-3-15(10(17)12-9(5)16)8-2-6(13-14-11)7(22-8)4-21-23(18,19)20/h3,6-8H,2,4H2,1H3,(H,12,16,17)(H2,18,19,20)/t6-,7+,8+/m0/s1" 
ATM InChIKey         InChI                1.03  OIFWQOKDSPDILA-XLPZGREQSA-N                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ATM "SYSTEMATIC NAME" ACDLabs              10.04 
;3'-azido-3'-deoxythymidine 5'-(dihydrogen phosphate)
;
ATM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,5R)-3-azido-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ATM "Create component"  1999-07-08 EBI  
ATM "Modify descriptor" 2011-06-04 RCSB 
# 
