data_CVM
#

_chem_comp.id                                   CVM
_chem_comp.name                                 CYMAL-4
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H40 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-05-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       480.546
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CVM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2WIE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CVM  C1    C1    C  0  1  N  N  N  -37.025  20.815   3.537   -3.002   0.981  -0.217  C1    CVM   1  
CVM  C2    C2    C  0  1  N  N  N  -36.676  21.388   4.908   -4.336   1.216   0.494  C2    CVM   2  
CVM  C3    C3    C  0  1  N  N  N  -36.470  20.242   5.889   -5.443   0.448  -0.233  C3    CVM   3  
CVM  C4    C4    C  0  1  N  N  N  -35.765  20.653   7.176   -6.777   0.683   0.477  C4    CVM   4  
CVM  C6    C6    C  0  1  N  N  N  -35.378  19.394   7.944   -7.884  -0.084  -0.249  C6    CVM   5  
CVM  C7    C7    C  0  1  N  N  N  -36.563  18.878   8.755   -9.236   0.249   0.385  C7    CVM   6  
CVM  C8    C8    C  0  1  N  N  N  -36.494  19.379  10.194  -10.342  -0.518  -0.342  C8    CVM   7  
CVM  C9    C9    C  0  1  N  N  N  -35.333  18.703  10.911  -10.081  -2.022  -0.226  C9    CVM   8  
CVM  C10   C10   C  0  1  N  N  N  -34.171  18.564   9.934   -8.729  -2.355  -0.860  C10   CVM   9  
CVM  C11   C11   C  0  1  N  N  N  -34.235  19.683   8.903   -7.623  -1.587  -0.133  C11   CVM  10  
CVM  O12   O12   O  0  1  N  N  N  -35.895  20.877   2.667   -1.968   1.697   0.462  O12   CVM  11  
CVM  C13   C13   C  0  1  N  N  R  -35.368  19.597   2.302   -0.674   1.545  -0.124  C13   CVM  12  
CVM  O14   O14   O  0  1  N  N  N  -34.084  19.791   1.705   -0.256   0.183  -0.009  O14   CVM  13  
CVM  C15   C15   C  0  1  N  N  R  -33.395  18.575   1.384    1.021  -0.086  -0.590  C15   CVM  14  
CVM  C16   C16   C  0  1  N  N  S  -34.222  17.646   0.495    2.089   0.750   0.120  C16   CVM  15  
CVM  C17   C17   C  0  1  N  N  R  -35.652  17.497   1.008    1.721   2.233   0.010  C17   CVM  16  
CVM  C18   C18   C  0  1  N  N  R  -36.254  18.866   1.296    0.326   2.447   0.604  C18   CVM  17  
CVM  C19   C19   C  0  1  N  N  N  -32.058  18.921   0.728    1.350  -1.572  -0.433  C19   CVM  18  
CVM  O20   O20   O  0  1  N  N  N  -31.141  17.828   0.855    0.410  -2.349  -1.178  O20   CVM  19  
CVM  O21   O21   O  0  1  N  N  N  -36.465  16.818   0.043    2.674   3.017   0.732  O21   CVM  20  
CVM  O22   O22   O  0  1  N  N  N  -37.589  18.694   1.788   -0.058   3.814   0.441  O22   CVM  21  
CVM  O23   O23   O  0  1  N  N  N  -33.571  16.375   0.442    3.359   0.526  -0.497  O23   CVM  22  
CVM  C24   C24   C  0  1  N  N  R  -33.918  15.607  -0.712    4.474   0.780   0.360  C24   CVM  23  
CVM  O25   O25   O  0  1  N  N  N  -34.242  16.516  -1.776    4.570  -0.258   1.337  O25   CVM  24  
CVM  C26   C26   C  0  1  N  N  R  -33.862  16.145  -3.101    4.726  -1.567   0.784  C26   CVM  25  
CVM  C27   C27   C  0  1  N  N  S  -33.856  14.635  -3.235    6.021  -1.624  -0.030  C27   CVM  26  
CVM  C28   C28   C  0  1  N  N  S  -32.682  14.121  -2.428    5.976  -0.552  -1.123  C28   CVM  27  
CVM  C29   C29   C  0  1  N  N  R  -32.773  14.622  -0.990    5.759   0.817  -0.471  C29   CVM  28  
CVM  C30   C30   C  0  1  N  N  N  -34.831  16.771  -4.098    4.789  -2.594   1.916  C30   CVM  29  
CVM  O31   O31   O  0  1  N  N  N  -36.114  16.149  -3.972    3.538  -2.622   2.605  O31   CVM  30  
CVM  O32   O32   O  0  1  N  N  N  -33.698  14.269  -4.610    6.151  -2.914  -0.631  O32   CVM  31  
CVM  O33   O33   O  0  1  N  N  N  -32.680  12.689  -2.439    7.211  -0.549  -1.842  O33   CVM  32  
CVM  O34   O34   O  0  1  N  N  N  -31.520  15.198  -0.594    5.642   1.816  -1.487  O34   CVM  33  
CVM  H11C  H11C  H  0  0  N  N  N  -37.334  19.766   3.653   -2.770  -0.084  -0.211  H11C  CVM  34  
CVM  H12C  H12C  H  0  0  N  N  N  -37.843  21.407   3.101   -3.072   1.332  -1.246  H12C  CVM  35  
CVM  H21C  H21C  H  0  0  N  N  N  -35.753  21.982   4.836   -4.267   0.865   1.523  H21C  CVM  36  
CVM  H22C  H22C  H  0  0  N  N  N  -37.495  22.034   5.259   -4.569   2.281   0.488  H22C  CVM  37  
CVM  H31C  H31C  H  0  0  N  N  N  -37.458  19.840   6.155   -5.513   0.799  -1.263  H31C  CVM  38  
CVM  H32C  H32C  H  0  0  N  N  N  -35.826  19.502   5.391   -5.210  -0.617  -0.227  H32C  CVM  39  
CVM  H41C  H41C  H  0  0  N  N  N  -34.862  21.234   6.936   -6.708   0.332   1.507  H41C  CVM  40  
CVM  H42C  H42C  H  0  0  N  N  N  -36.435  21.274   7.788   -7.010   1.748   0.472  H42C  CVM  41  
CVM  H6    H6    H  0  1  N  N  N  -35.067  18.637   7.208   -7.895   0.203  -1.301  H6    CVM  42  
CVM  H71C  H71C  H  0  0  N  N  N  -37.496  19.236   8.295   -9.225  -0.038   1.436  H71C  CVM  43  
CVM  H72C  H72C  H  0  0  N  N  N  -36.534  17.778   8.762   -9.422   1.320   0.302  H72C  CVM  44  
CVM  H111  H111  H  0  0  N  N  N  -33.287  19.732   8.348   -6.659  -1.824  -0.585  H111  CVM  45  
CVM  H112  H112  H  0  0  N  N  N  -34.401  20.647   9.405   -7.612  -1.874   0.918  H112  CVM  46  
CVM  H81C  H81C  H  0  0  N  N  N  -36.342  20.468  10.196  -11.306  -0.281   0.109  H81C  CVM  47  
CVM  H82C  H82C  H  0  0  N  N  N  -37.435  19.139  10.712  -10.354  -0.232  -1.393  H82C  CVM  48  
CVM  H91C  H91C  H  0  0  N  N  N  -35.023  19.312  11.773  -10.070  -2.309   0.825  H91C  CVM  49  
CVM  H92C  H92C  H  0  0  N  N  N  -35.641  17.710  11.270  -10.870  -2.568  -0.744  H92C  CVM  50  
CVM  H101  H101  H  0  0  N  N  N  -33.221  18.627  10.484   -8.543  -3.425  -0.777  H101  CVM  51  
CVM  H102  H102  H  0  0  N  N  N  -34.237  17.592   9.423   -8.740  -2.068  -1.911  H102  CVM  52  
CVM  H13   H13   H  0  1  N  N  N  -35.312  18.985   3.214   -0.716   1.824  -1.177  H13   CVM  53  
CVM  H18   H18   H  0  1  N  N  N  -36.304  19.474   0.381    0.339   2.195   1.664  H18   CVM  54  
CVM  H15   H15   H  0  1  N  N  N  -33.221  18.021   2.318    1.001   0.172  -1.649  H15   CVM  55  
CVM  H16   H16   H  0  1  N  N  N  -34.290  18.080  -0.513    2.138   0.464   1.170  H16   CVM  56  
CVM  H191  H191  H  0  0  N  N  N  -32.223  19.131  -0.339    2.356  -1.763  -0.807  H191  CVM  57  
CVM  H192  H192  H  0  0  N  N  N  -31.633  19.804   1.228    1.295  -1.847   0.620  H192  CVM  58  
CVM  H17   H17   H  0  1  N  N  N  -35.623  16.906   1.935    1.721   2.532  -1.038  H17   CVM  59  
CVM  H21   H21   H  0  1  N  N  N  -37.330  16.668   0.406    2.501   3.968   0.705  H21   CVM  60  
CVM  H22   H22   H  0  1  N  N  N  -37.575  18.656   2.737   -0.936   4.020   0.791  H22   CVM  61  
CVM  H20   H20   H  0  1  N  N  N  -30.938  17.483  -0.006    0.558  -3.303  -1.124  H20   CVM  62  
CVM  H24   H24   H  0  1  N  N  N  -34.815  14.985  -0.578    4.337   1.739   0.861  H24   CVM  63  
CVM  H29   H29   H  0  1  N  N  N  -33.006  13.733  -0.386    6.605   1.051   0.175  H29   CVM  64  
CVM  H26   H26   H  0  1  N  N  N  -32.847  16.513  -3.311    3.879  -1.791   0.136  H26   CVM  65  
CVM  H27   H27   H  0  1  N  N  N  -34.801  14.205  -2.871    6.872  -1.440   0.626  H27   CVM  66  
CVM  H301  H301  H  0  0  N  N  N  -34.924  17.848  -3.892    4.997  -3.580   1.500  H301  CVM  67  
CVM  H302  H302  H  0  0  N  N  N  -34.451  16.624  -5.120    5.581  -2.320   2.613  H302  CVM  68  
CVM  H28   H28   H  0  1  N  N  N  -31.750  14.493  -2.878    5.154  -0.764  -1.808  H28   CVM  69  
CVM  H32   H32   H  0  1  N  N  N  -33.663  15.053  -5.145    6.951  -3.021  -1.164  H32   CVM  70  
CVM  H33   H33   H  0  1  N  N  N  -32.680  12.379  -3.337    7.252   0.107  -2.551  H33   CVM  71  
CVM  H34   H34   H  0  1  N  N  N  -30.973  15.325  -1.360    5.498   2.709  -1.145  H34   CVM  72  
CVM  H31   H31   H  0  1  N  N  N  -36.311  16.011  -3.053    3.505  -3.253   3.337  H31   CVM  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CVM  C1   C2    SING  N  N   1  
CVM  C1   O12   SING  N  N   2  
CVM  C2   C3    SING  N  N   3  
CVM  C3   C4    SING  N  N   4  
CVM  C4   C6    SING  N  N   5  
CVM  C6   C7    SING  N  N   6  
CVM  C6   C11   SING  N  N   7  
CVM  C7   C8    SING  N  N   8  
CVM  C8   C9    SING  N  N   9  
CVM  C9   C10   SING  N  N  10  
CVM  C10  C11   SING  N  N  11  
CVM  O12  C13   SING  N  N  12  
CVM  C13  O14   SING  N  N  13  
CVM  C13  C18   SING  N  N  14  
CVM  O14  C15   SING  N  N  15  
CVM  C15  C16   SING  N  N  16  
CVM  C15  C19   SING  N  N  17  
CVM  C16  C17   SING  N  N  18  
CVM  C16  O23   SING  N  N  19  
CVM  C17  C18   SING  N  N  20  
CVM  C17  O21   SING  N  N  21  
CVM  C18  O22   SING  N  N  22  
CVM  C19  O20   SING  N  N  23  
CVM  O23  C24   SING  N  N  24  
CVM  C24  O25   SING  N  N  25  
CVM  C24  C29   SING  N  N  26  
CVM  O25  C26   SING  N  N  27  
CVM  C26  C27   SING  N  N  28  
CVM  C26  C30   SING  N  N  29  
CVM  C27  C28   SING  N  N  30  
CVM  C27  O32   SING  N  N  31  
CVM  C28  C29   SING  N  N  32  
CVM  C28  O33   SING  N  N  33  
CVM  C29  O34   SING  N  N  34  
CVM  C30  O31   SING  N  N  35  
CVM  C1   H11C  SING  N  N  36  
CVM  C1   H12C  SING  N  N  37  
CVM  C2   H21C  SING  N  N  38  
CVM  C2   H22C  SING  N  N  39  
CVM  C3   H31C  SING  N  N  40  
CVM  C3   H32C  SING  N  N  41  
CVM  C4   H41C  SING  N  N  42  
CVM  C4   H42C  SING  N  N  43  
CVM  C6   H6    SING  N  N  44  
CVM  C7   H71C  SING  N  N  45  
CVM  C7   H72C  SING  N  N  46  
CVM  C11  H111  SING  N  N  47  
CVM  C11  H112  SING  N  N  48  
CVM  C8   H81C  SING  N  N  49  
CVM  C8   H82C  SING  N  N  50  
CVM  C9   H91C  SING  N  N  51  
CVM  C9   H92C  SING  N  N  52  
CVM  C10  H101  SING  N  N  53  
CVM  C10  H102  SING  N  N  54  
CVM  C13  H13   SING  N  N  55  
CVM  C18  H18   SING  N  N  56  
CVM  C15  H15   SING  N  N  57  
CVM  C16  H16   SING  N  N  58  
CVM  C19  H191  SING  N  N  59  
CVM  C19  H192  SING  N  N  60  
CVM  C17  H17   SING  N  N  61  
CVM  O21  H21   SING  N  N  62  
CVM  O22  H22   SING  N  N  63  
CVM  O20  H20   SING  N  N  64  
CVM  C24  H24   SING  N  N  65  
CVM  C29  H29   SING  N  N  66  
CVM  C26  H26   SING  N  N  67  
CVM  C27  H27   SING  N  N  68  
CVM  C30  H301  SING  N  N  69  
CVM  C30  H302  SING  N  N  70  
CVM  C28  H28   SING  N  N  71  
CVM  O32  H32   SING  N  N  72  
CVM  O33  H33   SING  N  N  73  
CVM  O34  H34   SING  N  N  74  
CVM  O31  H31   SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CVM  SMILES            ACDLabs               10.04  "O(CCCCC1CCCCC1)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO"  
CVM  SMILES_CANONICAL  CACTVS                3.352  "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCCCCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"  
CVM  SMILES            CACTVS                3.352  "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCCCCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O"  
CVM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "C1CCC(CC1)CCCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O"  
CVM  SMILES            "OpenEye OEToolkits"  1.6.1  "C1CCC(CC1)CCCCOC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O"  
CVM  InChI             InChI                 1.03   "InChI=1S/C22H40O11/c23-10-13-15(25)16(26)18(28)22(31-13)33-20-14(11-24)32-21(19(29)17(20)27)30-9-5-4-8-12-6-2-1-3-7-12/h12-29H,1-11H2/t13-,14-,15-,16+,17-,18-,19-,20-,21-,22-/m1/s1"  
CVM  InChIKey          InChI                 1.03   JRNQXDHDSXBSFV-WXFJLFHKSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CVM  "SYSTEMATIC NAME"  ACDLabs               10.04  "4-cyclohexylbutyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside"  
CVM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-(4-cyclohexylbutoxy)-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CVM  "Create component"   2009-05-11  EBI   
CVM  "Modify descriptor"  2011-06-04  RCSB  
CVM  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CVM
_pdbx_chem_comp_synonyms.name        "4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
