data_DOM
#

_chem_comp.id                                   DOM
_chem_comp.name                                 "2'-DEOXYMALTOSE"
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H22 O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       326.297
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DOM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1BYD
_chem_comp.pdbx_subcomponent_list               "RR7 GLC"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
DOM  "C1'"   C7   C  0  1  N  N  R   0.039  33.775  24.774   4.113  -0.209  -0.326  RR7  1  C1   polymer  1   1  
DOM  "C2'"   C8   C  0  1  N  N  N  -0.852  32.694  24.341   3.547  -1.191   0.704  RR7  1  C2   polymer  1   2  
DOM  "C3'"   C9   C  0  1  N  N  R  -0.028  31.464  24.195   2.138  -1.612   0.275  RR7  1  C3   polymer  1   3  
DOM  "C4'"   C10  C  0  1  N  N  S   1.064  31.660  23.104   1.267  -0.362   0.126  RR7  1  C4   polymer  1   4  
DOM  "C5'"   C11  C  0  1  N  N  R   2.055  32.570  23.854   1.920   0.589  -0.881  RR7  1  C5   polymer  1   5  
DOM  "C6'"   C12  C  0  1  N  N  N   3.055  33.000  22.805   1.087   1.867  -0.992  RR7  1  C6   polymer  1   6  
DOM  "O1'"   O7   O  0  1  N  N  N  -0.666  34.965  24.497   5.405   0.232   0.096  RR7  1  O1   polymer  1   7  
DOM  "O3'"   O8   O  0  1  N  N  N  -0.898  30.357  24.021   1.574  -2.472   1.268  RR7  1  O3   polymer  1   8  
DOM  O1      O1   O  0  1  N  N  N   1.769  30.434  22.792  -0.030  -0.737  -0.343  RR7  1  O4   polymer  1   9  
DOM  "O5'"   O9   O  0  1  N  N  N   1.327  33.794  24.145   3.239   0.916  -0.439  RR7  1  O5   polymer  1  10  
DOM  "O6'"   O10  O  0  1  N  N  N   2.424  33.823  21.839   1.643   2.713  -2.000  RR7  1  O6   polymer  1  11  
DOM  C1      C1   C  0  1  N  N  R   1.082  29.646  21.850  -0.933  -1.128   0.693  GLC  2  C1   polymer  1  12  
DOM  C2      C2   C  0  1  N  N  R   1.952  28.402  21.566  -2.163  -1.795   0.074  GLC  2  C2   polymer  1  13  
DOM  C3      C3   C  0  1  N  N  S   3.290  28.847  21.086  -2.889  -0.782  -0.817  GLC  2  C3   polymer  1  14  
DOM  C4      C4   C  0  1  N  N  S   3.132  29.667  19.816  -3.254   0.448   0.020  GLC  2  C4   polymer  1  15  
DOM  C5      C5   C  0  1  N  N  R   2.302  30.933  20.162  -1.981   1.029   0.641  GLC  2  C5   polymer  1  16  
DOM  C6      C6   C  0  1  N  N  N   1.902  31.613  18.843  -2.344   2.222   1.527  GLC  2  C6   polymer  1  17  
DOM  O2      O2   O  0  1  N  N  N   2.161  27.601  22.702  -1.754  -2.915  -0.713  GLC  2  O2   polymer  1  18  
DOM  O3      O3   O  0  1  N  N  N   4.098  27.708  20.917  -4.080  -1.374  -1.342  GLC  2  O3   polymer  1  19  
DOM  O4      O4   O  0  1  N  N  N   4.467  29.990  19.313  -3.868   1.430  -0.818  GLC  2  O4   polymer  1  20  
DOM  O5      O5   O  0  1  N  N  N   1.039  30.538  20.673  -1.339   0.026   1.432  GLC  2  O5   polymer  1  21  
DOM  O6      O6   O  0  1  N  N  N   1.258  30.788  17.864  -1.149   2.835   2.013  GLC  2  O6   polymer  1  22  
DOM  "H1'"   H12  H  0  1  N  N  N   0.180  33.689  25.861   4.195  -0.704  -1.293  RR7  1  H1   polymer  1  23  
DOM  "H2'1"  H13  H  0  1  N  N  N  -1.638  32.532  25.093   4.189  -2.070   0.759  RR7  1  H21  polymer  1  24  
DOM  "H2'2"  H14  H  0  1  N  N  N  -1.314  32.952  23.377   3.503  -0.709   1.680  RR7  1  H22  polymer  1  25  
DOM  "H3'"   H15  H  0  1  N  N  N   0.509  31.323  25.145   2.189  -2.139  -0.677  RR7  1  H3   polymer  1  26  
DOM  "H4'"   H16  H  0  1  N  N  N   0.654  32.158  22.213   1.175   0.136   1.091  RR7  1  H4   polymer  1  27  
DOM  "H5'"   H17  H  0  1  N  N  N   2.512  32.086  24.730   1.974   0.104  -1.856  RR7  1  H5   polymer  1  28  
DOM  "H6'1"  H18  H  0  1  N  N  N   3.868  33.562  23.287   0.061   1.610  -1.258  RR7  1  H61  polymer  1  29  
DOM  "H6'2"  H19  H  0  1  N  N  N   3.468  32.109  22.310   1.094   2.389  -0.035  RR7  1  H62  polymer  1  30  
DOM  "HO1'"  H20  H  0  1  N  N  N  -0.140  35.713  24.756   5.824   0.858  -0.510  RR7  1  HO1  polymer  1  31  
DOM  "HO3'"  H21  H  0  1  N  N  N  -0.386  29.563  23.926   2.080  -3.282   1.420  RR7  1  HO3  polymer  1  32  
DOM  "HO6'"  H22  H  0  1  N  N  N   3.059  34.088  21.184   1.164   3.543  -2.125  RR7  1  HO6  polymer  1  33  
DOM  H1      H1   H  0  1  N  N  N   0.075  29.355  22.183  -0.436  -1.831   1.362  GLC  2  H1   polymer  1  34  
DOM  H2      H2   H  0  1  N  N  N   1.465  27.815  20.773  -2.833  -2.129   0.866  GLC  2  H2   polymer  1  35  
DOM  H3      H3   H  0  1  N  N  N   3.733  29.497  21.855  -2.237  -0.486  -1.639  GLC  2  H3   polymer  1  36  
DOM  H4      H4   H  0  1  N  N  N   2.582  29.076  19.069  -3.947   0.159   0.809  GLC  2  H4   polymer  1  37  
DOM  H5      H5   H  0  1  N  N  N   2.857  31.614  20.824  -1.306   1.355  -0.150  GLC  2  H5   polymer  1  38  
DOM  H61     H6   H  0  1  N  N  N   1.216  32.438  19.087  -2.913   2.947   0.944  GLC  2  H61  polymer  1  39  
DOM  H62     H7   H  0  1  N  N  N   2.817  32.020  18.387  -2.946   1.880   2.369  GLC  2  H62  polymer  1  40  
DOM  HO2     H8   H  0  1  N  N  N   2.700  26.854  22.469  -1.283  -3.596  -0.213  GLC  2  HO2  polymer  1  41  
DOM  HO3     H9   H  0  1  N  N  N   4.958  27.972  20.611  -3.923  -2.164  -1.877  GLC  2  HO3  polymer  1  42  
DOM  HO4     H10  H  0  1  N  N  N   4.390  30.504  18.517  -4.679   1.128  -1.249  GLC  2  HO4  polymer  1  43  
DOM  HO6     H11  H  0  1  N  N  N   1.057  31.307  17.094  -1.304   3.601   2.584  GLC  2  HO6  polymer  1  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DOM  C1     C2      SING  N  N   1  
DOM  C1     O5      SING  N  N   2  
DOM  C1     O1      SING  N  N   3  
DOM  C2     C3      SING  N  N   4  
DOM  C2     O2      SING  N  N   5  
DOM  C3     O3      SING  N  N   6  
DOM  C3     C4      SING  N  N   7  
DOM  C4     O4      SING  N  N   8  
DOM  C4     C5      SING  N  N   9  
DOM  C5     C6      SING  N  N  10  
DOM  C5     O5      SING  N  N  11  
DOM  C6     O6      SING  N  N  12  
DOM  O1     "C4'"   SING  N  N  13  
DOM  "C1'"  "C2'"   SING  N  N  14  
DOM  "C1'"  "O1'"   SING  N  N  15  
DOM  "C1'"  "O5'"   SING  N  N  16  
DOM  "C2'"  "C3'"   SING  N  N  17  
DOM  "C3'"  "O3'"   SING  N  N  18  
DOM  "C3'"  "C4'"   SING  N  N  19  
DOM  "C4'"  "C5'"   SING  N  N  20  
DOM  "C5'"  "C6'"   SING  N  N  21  
DOM  "C5'"  "O5'"   SING  N  N  22  
DOM  "C6'"  "O6'"   SING  N  N  23  
DOM  C1     H1      SING  N  N  24  
DOM  C2     H2      SING  N  N  25  
DOM  C3     H3      SING  N  N  26  
DOM  C4     H4      SING  N  N  27  
DOM  C5     H5      SING  N  N  28  
DOM  C6     H61     SING  N  N  29  
DOM  C6     H62     SING  N  N  30  
DOM  O2     HO2     SING  N  N  31  
DOM  O3     HO3     SING  N  N  32  
DOM  O4     HO4     SING  N  N  33  
DOM  O6     HO6     SING  N  N  34  
DOM  "C1'"  "H1'"   SING  N  N  35  
DOM  "C2'"  "H2'1"  SING  N  N  36  
DOM  "C2'"  "H2'2"  SING  N  N  37  
DOM  "C3'"  "H3'"   SING  N  N  38  
DOM  "C4'"  "H4'"   SING  N  N  39  
DOM  "C5'"  "H5'"   SING  N  N  40  
DOM  "C6'"  "H6'1"  SING  N  N  41  
DOM  "C6'"  "H6'2"  SING  N  N  42  
DOM  "O1'"  "HO1'"  SING  N  N  43  
DOM  "O3'"  "HO3'"  SING  N  N  44  
DOM  "O6'"  "HO6'"  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DOM  SMILES            ACDLabs               10.04  "O(C1C(OC(O)CC1O)CO)C2OC(C(O)C(O)C2O)CO"  
DOM  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@H](O[C@H]2[C@H](O)C[C@@H](O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"  
DOM  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O[CH]2[CH](O)C[CH](O)O[CH]2CO)[CH](O)[CH](O)[CH]1O"  
DOM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O"  
DOM  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(C(C(OC1O)CO)OC2C(C(C(C(O2)CO)O)O)O)O"  
DOM  InChI             InChI                 1.03   "InChI=1S/C12H22O10/c13-2-5-8(17)9(18)10(19)12(21-5)22-11-4(15)1-7(16)20-6(11)3-14/h4-19H,1-3H2/t4-,5-,6-,7+,8-,9+,10-,11+,12-/m1/s1"  
DOM  InChIKey          InChI                 1.03   FDCIWBIYHZDLEG-AEEGTDTOSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DOM  "SYSTEMATIC NAME"  ACDLabs               10.04  2-deoxy-4-O-alpha-D-glucopyranosyl-alpha-D-arabino-hexopyranose  
DOM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,6S)-4,6-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DOM  "Create component"    1999-07-08  RCSB  
DOM  "Modify descriptor"   2011-06-04  RCSB  
DOM  "Other modification"  2020-07-03  RCSB  
DOM  "Obsolete component"  2020-07-17  RCSB  
##
