data_DVM
#

_chem_comp.id                                   DVM
_chem_comp.name                                 acetylsisomicin
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H39 N5 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-[(1S,2R,3R,4S,5R)-5-amino-2-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-4-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]acetamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-11-09
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       489.563
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DVM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6BC2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DVM  C13  C1   C  0  1  N  N  R  -20.273   3.180  73.929  -3.172   0.658  -0.968  C13  DVM   1  
DVM  N21  N1   N  0  1  N  N  N  -15.278  -0.991  72.819   4.812  -1.212   2.192  N21  DVM   2  
DVM  C22  C2   C  0  1  N  N  N  -20.648  -0.112  70.670   0.786   2.792  -0.805  C22  DVM   3  
DVM  C23  C3   C  0  1  N  N  R  -20.258   4.680  73.640  -4.595   0.706  -0.407  C23  DVM   4  
DVM  C42  C4   C  0  1  N  N  R  -18.674  -0.933  72.004   1.521   0.634   0.216  C42  DVM   5  
DVM  C    C5   C  0  1  N  N  N  -18.686  -2.814  69.119   3.746   3.557   0.100  C    DVM   6  
DVM  O    O1   O  0  1  N  N  N  -19.008  -3.900  68.614   3.156   4.373   0.775  O    DVM   7  
DVM  CH3  C6   C  0  1  N  N  N  -17.354  -2.172  68.862   5.161   3.828  -0.345  CH3  DVM   8  
DVM  C11  C7   C  0  1  N  N  S  -17.149  -2.328  73.056   2.791  -1.314   0.799  C11  DVM   9  
DVM  C12  C8   C  0  1  N  N  R  -20.447   1.321  71.275  -0.650   2.517  -0.354  C12  DVM  10  
DVM  C21  C9   C  0  1  N  N  R  -15.862  -2.305  73.332   3.563  -1.950   1.963  C21  DVM  11  
DVM  C31  C10  C  0  1  N  N  N  -15.018  -3.578  72.673   3.882  -3.402   1.588  C31  DVM  12  
DVM  C32  C11  C  0  1  N  N  S  -19.292  -0.901  70.574   1.763   2.144   0.178  C32  DVM  13  
DVM  C33  C12  C  0  1  N  N  R  -18.836   5.124  73.574  -4.816  -0.502   0.508  C33  DVM  14  
DVM  C41  C13  C  0  1  N  N  N  -15.475  -4.758  73.160   4.431  -3.448   0.188  C41  DVM  15  
DVM  C43  C14  C  0  1  N  N  R  -18.113   4.879  74.855  -4.547  -1.785  -0.284  C43  DVM  16  
DVM  C51  C15  C  0  1  N  N  N  -16.959  -4.584  73.594   4.284  -2.461  -0.657  C51  DVM  17  
DVM  C52  C16  C  0  1  N  N  R  -18.554   0.489  72.650   0.085   0.359   0.668  C52  DVM  18  
DVM  C53  C17  C  0  1  N  N  N  -18.324   3.455  75.429  -3.125  -1.737  -0.850  C53  DVM  19  
DVM  C61  C18  C  0  1  N  N  N  -17.512  -5.180  74.841   4.864  -2.612  -2.040  C61  DVM  20  
DVM  C62  C19  C  0  1  N  N  S  -19.830   1.285  72.616  -0.892   1.007  -0.316  C62  DVM  21  
DVM  C83  C20  C  0  1  N  N  N  -16.584   5.059  74.610  -4.689  -2.996   0.640  C83  DVM  22  
DVM  C93  C21  C  0  1  N  N  N  -18.188   6.789  71.912  -6.348   0.342   2.183  C93  DVM  23  
DVM  N12  N2   N  0  1  N  N  N  -21.765   1.974  71.358  -1.587   3.139  -1.298  N12  DVM  24  
DVM  N32  N3   N  0  1  N  N  N  -19.629  -2.161  69.988   3.138   2.407  -0.254  N32  DVM  25  
DVM  N33  N4   N  0  1  N  N  N  -18.790   6.611  73.238  -6.203  -0.506   0.992  N33  DVM  26  
DVM  N61  N5   N  0  1  N  N  N  -18.912  -4.725  75.022   3.777  -2.628  -3.027  N61  DVM  27  
DVM  O11  O2   O  0  1  N  N  N  -17.401  -1.487  71.889   2.433   0.028   1.135  O11  DVM  28  
DVM  O23  O3   O  0  1  N  N  N  -20.875   4.888  72.372  -4.774   1.911   0.340  O23  DVM  29  
DVM  O43  O4   O  0  1  N  N  N  -18.545   5.849  75.809  -5.485  -1.889  -1.357  O43  DVM  30  
DVM  O51  O5   O  0  1  N  N  N  -17.748  -3.783  72.766   3.638  -1.314  -0.354  O51  DVM  31  
DVM  O52  O6   O  0  1  N  N  N  -18.143   0.381  73.991  -0.141  -1.052   0.703  O52  DVM  32  
DVM  O53  O7   O  0  1  N  N  N  -19.706   2.920  75.277  -2.978  -0.573  -1.666  O53  DVM  33  
DVM  O62  O8   O  0  1  N  N  N  -19.455   2.653  72.988  -2.233   0.750   0.106  O62  DVM  34  
DVM  H1   H1   H  0  1  N  N  N  -21.301   2.795  73.861  -3.023   1.492  -1.653  H1   DVM  35  
DVM  H2   H2   H  0  1  N  N  N  -15.784  -0.224  73.214   5.336  -1.615   2.955  H2   DVM  36  
DVM  H3   H3   H  0  1  N  N  N  -14.316  -0.928  73.085   5.369  -1.173   1.352  H3   DVM  37  
DVM  H5   H5   H  0  1  N  N  N  -21.076  -0.016  69.661   0.941   2.374  -1.800  H5   DVM  38  
DVM  H6   H6   H  0  1  N  N  N  -21.343  -0.675  71.311   0.959   3.868  -0.832  H6   DVM  39  
DVM  H7   H7   H  0  1  N  N  N  -20.790   5.219  74.437  -5.312   0.677  -1.227  H7   DVM  40  
DVM  H8   H8   H  0  1  N  N  N  -19.314  -1.554  72.648   1.676   0.215  -0.778  H8   DVM  41  
DVM  H9   H9   H  0  1  N  N  N  -16.764  -2.809  68.187   5.147   4.343  -1.305  H9   DVM  42  
DVM  H10  H10  H  0  1  N  N  N  -17.506  -1.187  68.397   5.661   4.452   0.396  H10  DVM  43  
DVM  H11  H11  H  0  1  N  N  N  -16.816  -2.050  69.814   5.697   2.884  -0.446  H11  DVM  44  
DVM  H12  H12  H  0  1  N  N  N  -17.723  -1.919  73.900   1.891  -1.894   0.594  H12  DVM  45  
DVM  H13  H13  H  0  1  N  N  N  -19.800   1.892  70.593  -0.805   2.935   0.641  H13  DVM  46  
DVM  H14  H14  H  0  1  N  N  N  -15.693  -2.349  74.418   2.952  -1.929   2.865  H14  DVM  47  
DVM  H15  H15  H  0  1  N  N  N  -13.952  -3.473  72.923   4.621  -3.802   2.281  H15  DVM  48  
DVM  H16  H16  H  0  1  N  N  N  -15.141  -3.566  71.580   2.972  -3.999   1.641  H16  DVM  49  
DVM  H17  H17  H  0  1  N  N  N  -18.613  -0.343  69.912   1.608   2.562   1.173  H17  DVM  50  
DVM  H18  H18  H  0  1  N  N  N  -18.329   4.571  72.769  -4.133  -0.447   1.356  H18  DVM  51  
DVM  H19  H19  H  0  1  N  N  N  -14.902  -5.670  73.235   4.967  -4.329  -0.131  H19  DVM  52  
DVM  H22  H22  H  0  1  N  N  N  -17.793   1.043  72.080  -0.070   0.777   1.662  H22  DVM  53  
DVM  H23  H23  H  0  1  N  N  N  -17.634   2.772  74.913  -2.408  -1.698  -0.030  H23  DVM  54  
DVM  H24  H24  H  0  1  N  N  N  -18.082   3.479  76.502  -2.943  -2.628  -1.451  H24  DVM  55  
DVM  H25  H25  H  0  1  N  N  N  -17.489  -6.277  74.766   5.530  -1.774  -2.247  H25  DVM  56  
DVM  H26  H26  H  0  1  N  N  N  -16.907  -4.859  75.702   5.424  -3.545  -2.099  H26  DVM  57  
DVM  H27  H27  H  0  1  N  N  N  -20.542   0.874  73.347  -0.737   0.589  -1.310  H27  DVM  58  
DVM  H28  H28  H  0  1  N  N  N  -16.038   4.881  75.548  -5.699  -3.027   1.046  H28  DVM  59  
DVM  H29  H29  H  0  1  N  N  N  -16.248   4.340  73.848  -4.497  -3.909   0.075  H29  DVM  60  
DVM  H30  H30  H  0  1  N  N  N  -16.387   6.083  74.260  -3.971  -2.917   1.456  H30  DVM  61  
DVM  H31  H31  H  0  1  N  N  N  -18.153   7.860  71.666  -7.384   0.322   2.520  H31  DVM  62  
DVM  H32  H32  H  0  1  N  N  N  -17.167   6.380  71.915  -5.700  -0.032   2.976  H32  DVM  63  
DVM  H33  H33  H  0  1  N  N  N  -18.793   6.260  71.161  -6.066   1.366   1.937  H33  DVM  64  
DVM  H34  H34  H  0  1  N  N  N  -21.659   2.891  71.742  -1.448   4.138  -1.342  H34  DVM  65  
DVM  H35  H35  H  0  1  N  N  N  -22.163   2.040  70.443  -1.508   2.723  -2.214  H35  DVM  66  
DVM  H37  H37  H  0  1  N  N  N  -20.514  -2.585  70.181   3.610   1.755  -0.794  H37  DVM  67  
DVM  H38  H38  H  0  1  N  N  N  -18.241   7.091  73.922  -6.520  -1.446   1.177  H38  DVM  68  
DVM  H40  H40  H  0  1  N  N  N  -19.287  -5.124  75.859   3.203  -1.802  -2.948  H40  DVM  69  
DVM  H41  H41  H  0  1  N  N  N  -18.932  -3.728  75.090   4.140  -2.728  -3.963  H41  DVM  70  
DVM  H43  H43  H  0  1  N  N  N  -21.781   4.606  72.410  -4.644   2.718  -0.177  H43  DVM  71  
DVM  H44  H44  H  0  1  N  N  N  -18.093   5.707  76.633  -5.372  -2.680  -1.903  H44  DVM  72  
DVM  H45  H45  H  0  1  N  N  N  -18.074   1.248  74.372  -0.997  -1.304   1.076  H45  DVM  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DVM  O    C    DOUB  N  N   1  
DVM  CH3  C    SING  N  N   2  
DVM  C    N32  SING  N  N   3  
DVM  N32  C32  SING  N  N   4  
DVM  C32  C22  SING  N  N   5  
DVM  C32  C42  SING  N  N   6  
DVM  C22  C12  SING  N  N   7  
DVM  C12  N12  SING  N  N   8  
DVM  C12  C62  SING  N  N   9  
DVM  O11  C42  SING  N  N  10  
DVM  O11  C11  SING  N  N  11  
DVM  C93  N33  SING  N  N  12  
DVM  C42  C52  SING  N  N  13  
DVM  O23  C23  SING  N  N  14  
DVM  C62  C52  SING  N  N  15  
DVM  C62  O62  SING  N  N  16  
DVM  C52  O52  SING  N  N  17  
DVM  C31  C41  SING  N  N  18  
DVM  C31  C21  SING  N  N  19  
DVM  O51  C11  SING  N  N  20  
DVM  O51  C51  SING  N  N  21  
DVM  N21  C21  SING  N  N  22  
DVM  O62  C13  SING  N  N  23  
DVM  C11  C21  SING  N  N  24  
DVM  C41  C51  DOUB  N  N  25  
DVM  N33  C33  SING  N  N  26  
DVM  C33  C23  SING  N  N  27  
DVM  C33  C43  SING  N  N  28  
DVM  C51  C61  SING  N  N  29  
DVM  C23  C13  SING  N  N  30  
DVM  C13  O53  SING  N  N  31  
DVM  C83  C43  SING  N  N  32  
DVM  C61  N61  SING  N  N  33  
DVM  C43  C53  SING  N  N  34  
DVM  C43  O43  SING  N  N  35  
DVM  O53  C53  SING  N  N  36  
DVM  C13  H1   SING  N  N  37  
DVM  N21  H2   SING  N  N  38  
DVM  N21  H3   SING  N  N  39  
DVM  C22  H5   SING  N  N  40  
DVM  C22  H6   SING  N  N  41  
DVM  C23  H7   SING  N  N  42  
DVM  C42  H8   SING  N  N  43  
DVM  CH3  H9   SING  N  N  44  
DVM  CH3  H10  SING  N  N  45  
DVM  CH3  H11  SING  N  N  46  
DVM  C11  H12  SING  N  N  47  
DVM  C12  H13  SING  N  N  48  
DVM  C21  H14  SING  N  N  49  
DVM  C31  H15  SING  N  N  50  
DVM  C31  H16  SING  N  N  51  
DVM  C32  H17  SING  N  N  52  
DVM  C33  H18  SING  N  N  53  
DVM  C41  H19  SING  N  N  54  
DVM  C52  H22  SING  N  N  55  
DVM  C53  H23  SING  N  N  56  
DVM  C53  H24  SING  N  N  57  
DVM  C61  H25  SING  N  N  58  
DVM  C61  H26  SING  N  N  59  
DVM  C62  H27  SING  N  N  60  
DVM  C83  H28  SING  N  N  61  
DVM  C83  H29  SING  N  N  62  
DVM  C83  H30  SING  N  N  63  
DVM  C93  H31  SING  N  N  64  
DVM  C93  H32  SING  N  N  65  
DVM  C93  H33  SING  N  N  66  
DVM  N12  H34  SING  N  N  67  
DVM  N12  H35  SING  N  N  68  
DVM  N32  H37  SING  N  N  69  
DVM  N33  H38  SING  N  N  70  
DVM  N61  H40  SING  N  N  71  
DVM  N61  H41  SING  N  N  72  
DVM  O23  H43  SING  N  N  73  
DVM  O43  H44  SING  N  N  74  
DVM  O52  H45  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DVM  SMILES            ACDLabs               12.01  "C1(OCC(C(C1O)NC)(O)C)OC2C(CC(C(C2O)OC3C(N)CC=C(CN)O3)NC(=O)C)N"  
DVM  InChI             InChI                 1.03   "InChI=1S/C21H39N5O8/c1-9(27)26-13-6-12(24)16(33-20-15(29)18(25-3)21(2,30)8-31-20)14(28)17(13)34-19-11(23)5-4-10(7-22)32-19/h4,11-20,25,28-30H,5-8,22-24H2,1-3H3,(H,26,27)/t11-,12-,13+,14-,15-,16+,17-,18-,19-,20-,21+/m1/s1"  
DVM  InChIKey          InChI                 1.03   OBNIYNLDNPJJOU-IMHCYBRXSA-N  
DVM  SMILES_CANONICAL  CACTVS                3.385  "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](NC(C)=O)[C@@H](O[C@H]3OC(=CC[C@H]3N)CN)[C@@H]2O"  
DVM  SMILES            CACTVS                3.385  "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](NC(C)=O)[CH](O[CH]3OC(=CC[CH]3N)CN)[CH]2O"  
DVM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@H]1C[C@H]([C@@H]([C@H]([C@@H]1O[C@@H]2[C@@H](CC=C(O2)CN)N)O)O[C@@H]3[C@@H]([C@H]([C@@](CO3)(C)O)NC)O)N"  
DVM  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1CC(C(C(C1OC2C(CC=C(O2)CN)N)O)OC3C(C(C(CO3)(C)O)NC)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DVM  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(1S,2R,3R,4S,5R)-5-amino-2-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-4-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]acetamide"  
DVM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[(1~{S},2~{R},3~{R},4~{S},5~{R})-2-[[(2~{S},3~{R})-6-(aminomethyl)-3-azanyl-3,4-dihydro-2~{H}-pyran-2-yl]oxy]-5-azanyl-4-[(2~{R},3~{R},4~{R},5~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DVM  "Create component"  2017-11-09  RCSB  
DVM  "Initial release"   2018-02-28  RCSB  
DVM  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DVM
_pdbx_chem_comp_synonyms.name        "N-[(1S,2R,3R,4S,5R)-5-amino-2-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-4-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]acetamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
