data_FDM
#

_chem_comp.id                                   FDM
_chem_comp.name                                 "3'-FLUORO-3'-DEOXYTHYMIDINE MONOPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 F N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PHOSPHORIC ACID MONO-[3-FLUORO-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYRO-FURAN-2-YLMETHYL] ESTER"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-01-14
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       324.200
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    FDM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1NMX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FDM  N1      N1    N  0  1  Y  N  N  13.400  77.886  24.234  -0.383  -0.175   2.257  N1      FDM   1  
FDM  C6      C6    C  0  1  Y  N  N  12.643  77.015  23.466  -0.485  -0.940   3.387  C6      FDM   2  
FDM  C2      C2    C  0  1  Y  N  N  13.814  79.166  23.811   0.551   0.787   2.164  C2      FDM   3  
FDM  O2      O2    O  0  1  N  N  N  14.504  79.894  24.564   0.624   1.456   1.151  O2      FDM   4  
FDM  N3      N3    N  0  1  Y  N  N  13.372  79.576  22.613   1.407   1.021   3.176  N3      FDM   5  
FDM  C4      C4    C  0  1  Y  N  N  12.612  78.739  21.767   1.336   0.291   4.308  C4      FDM   6  
FDM  O4      O4    O  0  1  N  N  N  12.278  79.181  20.588   2.110   0.502   5.224  O4      FDM   7  
FDM  C5      C5    C  0  1  Y  N  N  12.216  77.417  22.270   0.360  -0.728   4.417  C5      FDM   8  
FDM  C7      C7    C  0  1  N  N  N  11.362  76.583  21.298   0.263  -1.560   5.669  C7      FDM   9  
FDM  "O4'"   O4*   O  0  1  N  N  N  14.615  76.171  25.278  -0.567  -0.681  -0.072  "O4'"   FDM  10  
FDM  F       F     F  0  1  N  N  N  14.449  76.772  28.430  -3.769   0.173  -0.788  F       FDM  11  
FDM  "C1'"   C1*   C  0  1  N  N  R  13.869  77.326  25.476  -1.301  -0.405   1.139  "C1'"   FDM  12  
FDM  "C2'"   C2*   C  0  1  N  N  N  12.859  76.973  26.585  -2.088   0.886   0.803  "C2'"   FDM  13  
FDM  "C3'"   C3*   C  0  1  N  N  S  13.682  76.079  27.490  -2.462   0.662  -0.681  "C3'"   FDM  14  
FDM  "C4'"   C4*   C  0  1  N  N  R  14.650  75.382  26.491  -1.449  -0.389  -1.171  "C4'"   FDM  15  
FDM  "O5'"   O5*   O  0  1  N  N  N  13.284  73.555  26.047   0.286  -0.814  -2.799  "O5'"   FDM  16  
FDM  "C5'"   C5*   C  0  1  N  N  N  14.639  73.791  26.440  -0.650   0.167  -2.352  "C5'"   FDM  17  
FDM  P1      P1    P  0  1  N  N  N  12.647  72.156  26.796   1.086  -0.165  -4.035  P1      FDM  18  
FDM  OP2     OP2   O  0  1  N  N  N  12.369  72.720  28.241   2.165  -1.222  -4.592  OP2     FDM  19  
FDM  OP1     OP1   O  0  1  N  N  N  11.445  71.919  26.064   1.784   1.059  -3.582  OP1     FDM  20  
FDM  OP3     OP3   O  0  1  N  N  N  13.674  71.131  27.043   0.049   0.211  -5.208  OP3     FDM  21  
FDM  HC61    1HC6  H  0  0  N  N  N  12.379  75.999  23.807  -1.239  -1.711   3.453  HC61    FDM  22  
FDM  HN31    1HN3  H  0  0  N  N  N  13.615  80.529  22.343   2.075   1.719   3.092  HN31    FDM  23  
FDM  HC71    1HC7  H  0  0  N  N  N  11.004  76.919  20.296   1.025  -1.240   6.379  HC71    FDM  24  
FDM  HC72    2HC7  H  0  0  N  N  N  11.910  75.626  21.134  -0.723  -1.433   6.114  HC72    FDM  25  
FDM  HC73    3HC7  H  0  0  N  N  N  10.458  76.260  21.865   0.417  -2.610   5.420  HC73    FDM  26  
FDM  "H1'1"  1H1*  H  0  0  N  N  N  14.448  78.203  25.847  -1.985  -1.223   1.368  "H1'1"  FDM  27  
FDM  "H2'1"  1H2*  H  0  0  N  N  N  12.386  77.848  27.089  -2.982   0.969   1.422  "H2'1"  FDM  28  
FDM  "H2'2"  2H2*  H  0  0  N  N  N  11.901  76.528  26.226  -1.455   1.767   0.916  "H2'2"  FDM  29  
FDM  "H3'1"  1H3*  H  0  0  N  N  N  13.021  75.407  28.086  -2.355   1.588  -1.246  "H3'1"  FDM  30  
FDM  "H4'1"  1H4*  H  0  0  N  N  N  15.702  75.392  26.858  -1.972  -1.296  -1.473  "H4'1"  FDM  31  
FDM  "H5'1"  1H5*  H  0  0  N  N  N  15.418  73.322  25.794  -1.331   0.416  -3.165  "H5'1"  FDM  32  
FDM  "H5'2"  2H5*  H  0  0  N  N  N  14.969  73.275  27.371  -0.115   1.063  -2.038  "H5'2"  FDM  33  
FDM  HP31    1HP3  H  0  0  N  N  N  12.015  71.942  28.657   2.621  -0.795  -5.329  HP31    FDM  34  
FDM  HP21    1HP2  H  0  0  N  N  N  13.320  70.353  27.459  -0.382  -0.611  -5.474  HP21    FDM  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FDM  N1     C6      SING  Y  N   1  
FDM  N1     C2      SING  Y  N   2  
FDM  N1     "C1'"   SING  N  N   3  
FDM  C6     C5      DOUB  Y  N   4  
FDM  C6     HC61    SING  N  N   5  
FDM  C2     O2      DOUB  N  N   6  
FDM  C2     N3      SING  Y  N   7  
FDM  N3     C4      SING  Y  N   8  
FDM  N3     HN31    SING  N  N   9  
FDM  C4     O4      DOUB  N  N  10  
FDM  C4     C5      SING  Y  N  11  
FDM  C5     C7      SING  N  N  12  
FDM  C7     HC71    SING  N  N  13  
FDM  C7     HC72    SING  N  N  14  
FDM  C7     HC73    SING  N  N  15  
FDM  "O4'"  "C1'"   SING  N  N  16  
FDM  "O4'"  "C4'"   SING  N  N  17  
FDM  F      "C3'"   SING  N  N  18  
FDM  "C1'"  "C2'"   SING  N  N  19  
FDM  "C1'"  "H1'1"  SING  N  N  20  
FDM  "C2'"  "C3'"   SING  N  N  21  
FDM  "C2'"  "H2'1"  SING  N  N  22  
FDM  "C2'"  "H2'2"  SING  N  N  23  
FDM  "C3'"  "C4'"   SING  N  N  24  
FDM  "C3'"  "H3'1"  SING  N  N  25  
FDM  "C4'"  "C5'"   SING  N  N  26  
FDM  "C4'"  "H4'1"  SING  N  N  27  
FDM  "O5'"  "C5'"   SING  N  N  28  
FDM  "O5'"  P1      SING  N  N  29  
FDM  "C5'"  "H5'1"  SING  N  N  30  
FDM  "C5'"  "H5'2"  SING  N  N  31  
FDM  P1     OP2     SING  N  N  32  
FDM  P1     OP1     DOUB  N  N  33  
FDM  P1     OP3     SING  N  N  34  
FDM  OP2    HP31    SING  N  N  35  
FDM  OP3    HP21    SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FDM  SMILES            ACDLabs               10.04  "O=C1NC(=O)N(C=C1C)C2OC(C(F)C2)COP(=O)(O)O"  
FDM  SMILES_CANONICAL  CACTVS                3.341  "CC1=CN([C@H]2C[C@H](F)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O"  
FDM  SMILES            CACTVS                3.341  "CC1=CN([CH]2C[CH](F)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"  
FDM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)F"  
FDM  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)F"  
FDM  InChI             InChI                 1.03   "InChI=1S/C10H14FN2O7P/c1-5-3-13(10(15)12-9(5)14)8-2-6(11)7(20-8)4-19-21(16,17)18/h3,6-8H,2,4H2,1H3,(H,12,14,15)(H2,16,17,18)/t6-,7+,8+/m0/s1"  
FDM  InChIKey          InChI                 1.03   GGCAVPJXJISBOA-XLPZGREQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FDM  "SYSTEMATIC NAME"  ACDLabs               10.04  "3'-deoxy-3'-fluorothymidine 5'-(dihydrogen phosphate)"  
FDM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,5R)-3-fluoro-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FDM  "Create component"   2003-01-14  RCSB  
FDM  "Modify descriptor"  2011-06-04  RCSB  
FDM  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     FDM
_pdbx_chem_comp_synonyms.name        "PHOSPHORIC ACID MONO-[3-FLUORO-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYRO-FURAN-2-YLMETHYL] ESTER"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
